Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023332.1

Orthogroup ID

OG0004703

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1155

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023332.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

gtgatagggatgtattactgaatgatgtccaaagcttgcaatctatcaatgatctgagcaatcagaaattggaaaatgttgaagagttgcttgcatcagatgtaatggaaatgaaggctttagttgtagagttggagggcatgcttgcaggcttccagggtgcttacaaggaaaacttcatgcttttatccactgatttctgcagtgtgaagtctttgcttgcagattcctcaaagtttgttcactcattgcttgaggacatctggtctgacataattgtgaaggattgtgctgtgtcagtgctacacctctgtcacatgggaatttttctagaaacagtgactgggctgaatgtagagaatggtctgcttcaacacggactgtgtgaatctagttctgttgtagctgatctgagggaacacaataataggtcaaaaagagagcttgagatgtgccagattctgaaggggaaattactggctgacattaagaccagtcttgatcgcatctctagaaaagaagaggaagctgggaagcttgatatgaaggtgaccacttttgagaaacagatatcagaactacaggttcaggaggagttaatgttgcaaaggtctaattatatgggatcccagcttgatattttactgaaggacttggacttaagtaactcaaactttggcacattgctgctagatcaagagaaattgctcaaagataaagagaaggcactcgagtctcaagctgagtgtctaatgatagattggtgtgcgaaagactttgagtcacttatcttggcatcagaactagaagagatggctattcacaaagctgacatggggagagagaatatagcttgttttgcgatgctggaagatttcaagaaagaagtggttcttctgaaggttgatgcaatttttaaagaacagttcttattggatgaagaagtagaagttgcttatcttcaaaagaaagtacaaaaggagagggaggacctgttgttacagctggaacaaagtaatttatatattgcacgtatagataatgcaaacaaggctcttgaacaggacattcagatgttgaatgatgttgctcgttcgagtgatgctttgaaaggtgaacttggtgaagttaagaaatcagaggtgagtttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

384

Amino Acids

43.5

Weight (kDa)

4.61

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19050
fragaria_vesca	FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030
malus_domestica	MD00G1050200.v1.1 MD10G1088400.v1.1
prunus_persica	Prupe.8G115500_v2.0.a1
pyrus_communis	pycom05g06710 pycom05g06720 pycom10g07100 pycom10g07120 pycom10g07130
rosa_chinensis	RchiOBHm_Chr6g0259391
rosa_laevigata	RLG00000014535
rosa_multiflora	Rmu_sc0012054.1_g000003 Rmu_sc0023331.1_g000001 Rmu_sc0023332.1_g000001 Rmu_sc0037344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123360 Rroxscaffold_5G00349410 Rroxscaffold_7G00206650
rosa_rugosa	Rorug05G0588700
rosa_samantha	Rh6AG104100 Rh6AG104200 Rh6BG097400 Rh6CG093500 Rh6DG087300
rosa_wichuraiana	Rw6G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	620, 633
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	3 cut(s)	484, 667, 919
AfaI	GTAC	1 cut(s)	974
AflII	CTTAAG	1 cut(s)	660
AgsI	TTSAA	7 cut(s)	82, 373, 879, 964, 1060, 1080, 1110
AhdI	GACNNNNNGTC	2 cut(s)	264, 780
AjnI	CCWGG	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	740
AlwI	GGATC	2 cut(s)	620, 633
AlwNI	CAGNNNCTG	2 cut(s)	343, 462
Ama87I	CYCGRG	1 cut(s)	730
ApeKI	GCWGC	1 cut(s)	687
ApoI	RAATTY	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	890
AspS9I	GGNCC	1 cut(s)	990
AsuHPI	GGTGA	4 cut(s)	561, 1126, 1135, 1155
AvaI	CYCGRG	1 cut(s)	730
AvaII	GGWCC	1 cut(s)	990
BamHI	GGATCC	1 cut(s)	625
BbvI	GCAGC	1 cut(s)	674
BccI	CCATC	1 cut(s)	807
BciT130I	CCWGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	740
BfaI	CTAG	5 cut(s)	331, 392, 512, 691, 805
BfmI	CTRYAG	2 cut(s)	201, 580
BfrI	CTTAAG	1 cut(s)	660
BisI	GCNGC	1 cut(s)	688
BlsI	GCNGC	1 cut(s)	689
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	990
BmeRI	GACNNNNNGTC	2 cut(s)	264, 780
BmeT110I	CYCGRG	1 cut(s)	730
BmgT120I	GGNCC	1 cut(s)	990
BmiI	GGNNCC	1 cut(s)	627
BmrFI	CCNGG	1 cut(s)	157
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	6 cut(s)	103, 515, 805, 854, 897, 1092
BmuI	ACTGGG	1 cut(s)	353
BpuEI	CTTGAG	3 cut(s)	274, 466, 722
BsaAI	YACGTR	1 cut(s)	1033
BsaJI	CCNNGG	1 cut(s)	156
BsaXI	ACNNNNNCTCC	4 cut(s)	586, 616, 979, 1009
Bse1I	ACTGG	3 cut(s)	348, 482, 494
Bse3DI	GCAATG	2 cut(s)	247, 682
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	15, 942
BseMI	GCAATG	2 cut(s)	247, 682
BseMII	CTCAG	3 cut(s)	46, 403, 734
BseNI	ACTGG	3 cut(s)	348, 482, 494
BseRI	GAGGAG	1 cut(s)	607
BseXI	GCAGC	1 cut(s)	674
BseYI	CCCAGC	2 cut(s)	529, 629
BsiHKCI	CYCGRG	1 cut(s)	730
BsmAI	GTCTC	1 cut(s)	740
BsoBI	CYCGRG	1 cut(s)	730
Bsp143I	GATC	5 cut(s)	51, 408, 501, 625, 693
BspCNI	CTCAG	3 cut(s)	47, 404, 735
BspLI	GGNNCC	1 cut(s)	627
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	2 cut(s)	620, 633
BspTI	CTTAAG	1 cut(s)	660
BsrDI	GCAATG	2 cut(s)	247, 682
BsrI	ACTGG	3 cut(s)	348, 482, 494
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	5 cut(s)	51, 408, 501, 625, 693
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	3 cut(s)	339, 383, 926
Bst6I	CTCTTC	3 cut(s)	77, 515, 803
BstAFI	CTTAAG	1 cut(s)	660
BstBAI	YACGTR	1 cut(s)	1033
BstC8I	GCNNGC	6 cut(s)	37, 92, 142, 146, 150, 221
BstDEI	CTNAG	3 cut(s)	55, 412, 743
BstEII	GGTNACC	1 cut(s)	549
BstF5I	GGATG	2 cut(s)	15, 942
BstKTI	GATC	5 cut(s)	54, 411, 504, 628, 696
BstMAI	GTCTC	1 cut(s)	740
BstMBI	GATC	5 cut(s)	51, 408, 501, 625, 693
BstMWI	GCNNNNNNNGC	2 cut(s)	859, 1051
BstNI	CCWGG	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	144
BstPI	GGTNACC	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	2 cut(s)	201, 580
BstV1I	GCAGC	1 cut(s)	674
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BtgZI	GCGATG	1 cut(s)	877
BtsCI	GGATG	2 cut(s)	15, 942
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	4 cut(s)	191, 210, 305, 344
Cac8I	GCNNGC	6 cut(s)	37, 92, 142, 146, 150, 221
CaiI	CAGNNNCTG	2 cut(s)	343, 462
Cfr13I	GGNCC	1 cut(s)	990
Csp6I	GTAC	1 cut(s)	973
CviAII	CATG	4 cut(s)	141, 180, 318, 834
CviQI	GTAC	1 cut(s)	973
DdeI	CTNAG	3 cut(s)	55, 412, 743
DpnI	GATC	5 cut(s)	53, 410, 503, 627, 695
DpnII	GATC	5 cut(s)	51, 408, 501, 625, 693
DraI	TTTAAA	1 cut(s)	918
DriI	GACNNNNNGTC	2 cut(s)	264, 780
Eam1104I	CTCTTC	3 cut(s)	77, 515, 803
Eam1105I	GACNNNNNGTC	2 cut(s)	264, 780
EarI	CTCTTC	3 cut(s)	77, 515, 803
Eco32I	GATATC	1 cut(s)	572
Eco47I	GGWCC	1 cut(s)	990
Eco57I	CTGAAG	3 cut(s)	484, 667, 919
Eco88I	CYCGRG	1 cut(s)	730
Eco91I	GGTNACC	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	990
EcoO65I	GGTNACC	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	155
EcoRV	GATATC	1 cut(s)	572
FaeI	CATG	4 cut(s)	144, 183, 321, 837
FalI	AAGNNNNNCTT	8 cut(s)	74, 106, 160, 192, 878, 910, 1103, 1135
FatI	CATG	4 cut(s)	140, 179, 317, 833
Fnu4HI	GCNGC	1 cut(s)	688
FokI	GGATG	2 cut(s)	22, 949
Fsp4HI	GCNGC	1 cut(s)	688
FspBI	CTAG	5 cut(s)	331, 392, 512, 691, 805
GluI	GCNGC	1 cut(s)	688
GsaI	CCCAGC	2 cut(s)	533, 633
Hin1II	CATG	4 cut(s)	144, 183, 321, 837
HindIII	AAGCTT	2 cut(s)	33, 535
HinfI	GANTC	5 cut(s)	226, 388, 459, 733, 781
HphI	GGTGA	4 cut(s)	561, 1126, 1135, 1155
Hpy166II	GTNNAC	2 cut(s)	243, 1117
Hpy188III	TCNNGA	7 cut(s)	331, 499, 512, 589, 697, 879, 1057
Hpy8I	GTNNAC	2 cut(s)	243, 1117
HpyAV	CCTTC	7 cut(s)	108, 276, 459, 540, 642, 717, 894
HpyCH4III	ACNGT	3 cut(s)	339, 383, 926
HpyCH4IV	ACGT	1 cut(s)	1032
HpyCH4V	TGCA	9 cut(s)	39, 94, 148, 203, 223, 606, 910, 1030, 1045
HpyF10VI	GCNNNNNNNGC	2 cut(s)	859, 1051
HpyF3I	CTNAG	3 cut(s)	55, 412, 743
HpySE526I	ACGT	1 cut(s)	1032
Hsp92II	CATG	4 cut(s)	144, 183, 321, 837
Kzo9I	GATC	5 cut(s)	51, 408, 501, 625, 693
Lsp1109I	GCAGC	1 cut(s)	674
LweI	GCATC	6 cut(s)	103, 515, 805, 854, 897, 1092
MaeI	CTAG	5 cut(s)	331, 392, 512, 691, 805
MaeII	ACGT	1 cut(s)	1032
MaeIII	GTNAC	6 cut(s)	313, 339, 549, 664, 782, 998
MalI	GATC	5 cut(s)	53, 410, 503, 627, 695
MboI	GATC	5 cut(s)	51, 408, 501, 625, 693
MboII	GAAGA	7 cut(s)	94, 532, 820, 883, 886, 952, 952
MflI	RGATCY	1 cut(s)	625
MluCI	AATT	8 cut(s)	67, 275, 323, 472, 615, 703, 911, 1017
MlyI	GAGTC	2 cut(s)	742, 790
MmeI	TCCRAC	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	890
MseI	TTAA	5 cut(s)	488, 598, 661, 917, 1130
MslI	CAYNNNNRTG	2 cut(s)	277, 1072
MspA1I	CMGCKG	1 cut(s)	1005
MspCI	CTTAAG	1 cut(s)	660
MspR9I	CCNGG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	859, 1051
NdeII	GATC	5 cut(s)	51, 408, 501, 625, 693
NlaIII	CATG	4 cut(s)	144, 183, 321, 837
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	4 cut(s)	313, 339, 549, 782
NspI	RCATGY	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	144
PaeR7I	CTCGAG	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	890
PfeI	GAWTC	3 cut(s)	226, 388, 459
PkrI	GCNGC	1 cut(s)	689
PleI	GAGTC	2 cut(s)	741, 789
PpsI	GAGTC	2 cut(s)	741, 789
Ppu21I	YACGTR	1 cut(s)	1033
PpuMI	RGGWCCY	1 cut(s)	990
Psp5II	RGGWCCY	1 cut(s)	990
Psp6I	CCWGG	1 cut(s)	155
PspEI	GGTNACC	1 cut(s)	549
PspFI	CCCAGC	2 cut(s)	529, 629
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	990
PspPPI	RGGWCCY	1 cut(s)	990
PspXI	VCTCGAGB	1 cut(s)	730
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	2 cut(s)	343, 462
PsuI	RGATCY	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	1005
RsaI	GTAC	1 cut(s)	974
RsaNI	GTAC	1 cut(s)	973
RseI	CAYNNNNRTG	2 cut(s)	277, 1072
SaqAI	TTAA	5 cut(s)	488, 598, 661, 917, 1130
SatI	GCNGC	1 cut(s)	688
Sau3AI	GATC	5 cut(s)	51, 408, 501, 625, 693
Sau96I	GGNCC	1 cut(s)	990
SchI	GAGTC	2 cut(s)	742, 790
ScrFI	CCNGG	1 cut(s)	157
SfaNI	GCATC	6 cut(s)	103, 515, 805, 854, 897, 1092
SfcI	CTRYAG	2 cut(s)	201, 580
Sfr274I	CTCGAG	1 cut(s)	730
SinI	GGWCC	1 cut(s)	990
SlaI	CTCGAG	1 cut(s)	730
SmiMI	CAYNNNNRTG	2 cut(s)	277, 1072
SmlI	CTYRAG	5 cut(s)	253, 445, 660, 730, 737
SmoI	CTYRAG	5 cut(s)	253, 445, 660, 730, 737
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	8 cut(s)	67, 275, 323, 472, 615, 703, 911, 1017
SspMI	CTAG	5 cut(s)	331, 392, 512, 691, 805
StyD4I	CCNGG	1 cut(s)	155
TaaI	ACNGT	3 cut(s)	339, 383, 926
TaiI	ACGT	1 cut(s)	1035
TaqI	TCGA	2 cut(s)	731, 1096
TasI	AATT	8 cut(s)	67, 275, 323, 472, 615, 703, 911, 1017
TatI	WGTACW	1 cut(s)	972
TfiI	GAWTC	3 cut(s)	226, 388, 459
Tru1I	TTAA	5 cut(s)	488, 598, 661, 917, 1130
Tru9I	TTAA	5 cut(s)	488, 598, 661, 917, 1130
TscAI	CASTG	4 cut(s)	198, 210, 305, 344
TseFI	GTSAC	4 cut(s)	313, 339, 549, 782
TseI	GCWGC	1 cut(s)	687
Tsp45I	GTSAC	4 cut(s)	313, 339, 549, 782
TspDTI	ATGAA	4 cut(s)	127, 168, 559, 953
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	4 cut(s)	198, 210, 305, 344
Vha464I	CTTAAG	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	990
XapI	RAATTY	1 cut(s)	323
XbaI	TCTAGA	2 cut(s)	330, 511
XceI	RCATGY	1 cut(s)	144
XhoI	CTCGAG	1 cut(s)	730
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	5 cut(s)	331, 392, 512, 691, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.