pycom05g09890

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014819
Physical Location & Seq
Forward (+)
13177115 .. 13178645
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 891 bp
ATGAGCAAGTCCTCCTCCAAGCCTAAGCATAAAAGCAAGAGCAAGAGCAAAAACACAACCAGCAGCAAGGGCCCTCCACTTTTCTCCGACTTTGGTCACAAAGCTAAAGACTTGCTTACAGCGGGATATTCCAAGGGCCAGAGGTTCACCTTCGCATCCCACATTGATGGCGGAGCGAACCTTACATGTTCAACCTCCGCGAAGATTGGAGGACGATCAACTGCAGCTGTTGCAGGATCGTACACATACAAGAATGCCACCTTCAACTGCCGAATTGATACGGATTCAAAAGTTGCTGGAACATTAAGTACGAAGTTTTTGTCAAGCACAAAGACTTCGGCTTCATTCAGCTTGCCCGAGTACAAGTCTAGCAAGCTCGGGTTTCAAACACGCCAAGAATATGGTGCCGCAGCTGTGTCTGTTTCTCTGTGCCAGTCTCCCACAATCAACCTTTCAGCAACCGTCGGTAGTGCAAGCATTGTCATCGGTATGGAGGCAGAATACAAAACTGCTTCCAGCACTTTCTCCAAATTTAATGCAGGCATTAGCATGAAGAGTCTCAATTCTGATGCTTCAATAATTCTGGGAAACAAGGGTGGCTTGATAACAGCATCGTACGTTCATTATCGTGGTCAAGAAAAGAAGAATGCAGCAGTGGTAGAGTTCACTCAGAACCTCTCAACAAAGAACACCACCTTGACAGTTGGAGGATCGTGCATGGTTGATCATCAAACAGTGGTGAAAGCTAGACTCGATGGTCGTGGAGATGTTAAGACTGTCCTGCGGTACAGTATTAGACCAAAGTCGTGCTTGTCTATCTCAGGCGAGTTCAACACCAAGGCACTTGACAAGATTCCTAAAATTGGACTGGCACTTTCTCTTGCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

297

Amino Acids

31.2

Weight (kDa)

9.89

Isoelectric Point (pI)

28.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 24 - 289 3.1e-43 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014819)

Species Orthologous Gene IDs
malus_domestica MD05G1100000.v1.1 MD05G1100300.v1.1
prunus_persica Prupe.8G144700_v2.0.a1
pyrus_communis pycom05g09890
rosa_chinensis RchiOBHm_Chr6g0253791
rosa_laevigata RLG00000014970
rosa_multiflora Rmu_sc0006323.1_g000019
rosa_roxburghii Rroxscaffold_7G00211520
rosa_rugosa Rorug05G0547200 Rorug05G0547200
rosa_samantha Rh6AG062800 Rh6BG056100 Rh6CG055600 Rh6CG056200 Rh6DG053200 Rh6DG054000
rosa_wichuraiana Rw6G005590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 756
AccB1I GGYRCC 1 cut(s) 404
AccII CGCG 1 cut(s) 200
AciI CCGC 5 cut(s) 122, 171, 198, 408, 784
AclWI GGATC 2 cut(s) 244, 718
AcsI RAATTY 1 cut(s) 530
AfaI GTAC 5 cut(s) 242, 310, 362, 617, 788
AfiI CCNNNNNNNGG 1 cut(s) 863
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 6 cut(s) 192, 265, 288, 386, 576, 832
AluBI AGCT 6 cut(s) 104, 227, 351, 376, 413, 746
AluI AGCT 6 cut(s) 104, 227, 351, 376, 413, 746
Alw26I GTCTC 2 cut(s) 441, 563
AlwI GGATC 2 cut(s) 244, 718
Ama87I CYCGRG 2 cut(s) 356, 377
AoxI GGCC 2 cut(s) 70, 136
ApaI GGGCCC 1 cut(s) 74
ApeKI GCWGC 4 cut(s) 63, 224, 410, 650
ApoI RAATTY 1 cut(s) 530
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspS9I GGNCC 3 cut(s) 70, 71, 136
AsuHPI GGTGA 2 cut(s) 139, 751
AvaI CYCGRG 2 cut(s) 356, 377
BaeGI GKGCMC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 74
BbvI GCAGC 4 cut(s) 75, 236, 422, 662
BccI CCATC 2 cut(s) 161, 749
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 2 cut(s) 441, 563
BfaI CTAG 2 cut(s) 369, 747
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 5 cut(s) 64, 225, 408, 411, 651
BlsI GCNGC 5 cut(s) 65, 226, 409, 412, 652
BmeT110I CYCGRG 2 cut(s) 356, 377
BmgT120I GGNCC 3 cut(s) 70, 71, 136
BmiI GGNNCC 2 cut(s) 72, 406
BmsI GCATC 3 cut(s) 164, 559, 620
BoxI GACNNNNGTC 2 cut(s) 93, 802
Bpu10I CCTNAGC 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 132, 837
Bsc4I CCNNNNNNNGG 1 cut(s) 863
Bse1I ACTGG 2 cut(s) 433, 873
BseDI CCNNGG 2 cut(s) 132, 837
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 863
BseMII CTCAG 2 cut(s) 683, 834
BseNI ACTGG 2 cut(s) 433, 873
BseRI GAGGAG 1 cut(s) 4
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 4 cut(s) 75, 236, 422, 662
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 2 cut(s) 72, 138
BshNI GGYRCC 1 cut(s) 404
BsiHKCI CYCGRG 2 cut(s) 356, 377
BsiWI CGTACG 1 cut(s) 615
BslI CCNNNNNNNGG 1 cut(s) 863
BsmAI GTCTC 2 cut(s) 441, 563
BsmI GAATGC 2 cut(s) 259, 652
BsnI GGCC 2 cut(s) 72, 138
BsoBI CYCGRG 2 cut(s) 356, 377
Bsp120I GGGCCC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 4 cut(s) 215, 236, 710, 724
BspACI CCGC 5 cut(s) 122, 171, 198, 408, 784
BspANI GGCC 2 cut(s) 72, 138
BspCNI CTCAG 2 cut(s) 682, 833
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 72, 406
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 2 cut(s) 244, 718
BspT107I GGYRCC 1 cut(s) 404
BsrI ACTGG 2 cut(s) 433, 873
BssECI CCNNGG 2 cut(s) 132, 837
BssMI GATC 4 cut(s) 215, 236, 710, 724
BssT1I CCWWGG 2 cut(s) 132, 837
Bst4CI ACNGT 5 cut(s) 463, 703, 736, 778, 791
Bst6I CTCTTC 1 cut(s) 548
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 4 cut(s) 353, 374, 475, 541
BstDEI CTNAG 3 cut(s) 24, 669, 820
BstF5I GGATG 1 cut(s) 155
BstFNI CGCG 1 cut(s) 200
BstKTI GATC 4 cut(s) 218, 239, 713, 727
BstMAI GTCTC 2 cut(s) 441, 563
BstMBI GATC 4 cut(s) 215, 236, 710, 724
BstMWI GCNNNNNNNGC 2 cut(s) 69, 230
BstNSI RCATGY 1 cut(s) 189
BstPAI GACNNNNGTC 2 cut(s) 93, 802
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 74
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 4 cut(s) 75, 236, 422, 662
BstXI CCANNNNNNTGG 2 cut(s) 167, 401
BsuRI GGCC 2 cut(s) 72, 138
BtsCI GGATG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 2 cut(s) 660, 741
Cac8I GCNNGC 4 cut(s) 353, 374, 475, 541
Cfr13I GGNCC 3 cut(s) 70, 71, 136
Csp6I GTAC 5 cut(s) 241, 309, 361, 616, 787
CviAII CATG 3 cut(s) 186, 550, 718
CviQI GTAC 5 cut(s) 241, 309, 361, 616, 787
DdeI CTNAG 3 cut(s) 24, 669, 820
DpnI GATC 4 cut(s) 217, 238, 712, 726
DpnII GATC 4 cut(s) 215, 236, 710, 724
DrdI GACNNNNNNGTC 1 cut(s) 756
DseDI GACNNNNNNGTC 1 cut(s) 756
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 2 cut(s) 132, 837
Eco24I GRGCYC 1 cut(s) 74
Eco88I CYCGRG 2 cut(s) 356, 377
EcoO109I RGGNCCY 2 cut(s) 70, 71
EcoT14I CCWWGG 2 cut(s) 132, 837
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 2 cut(s) 132, 837
FaeI CATG 3 cut(s) 189, 553, 721
FaiI YATR 7 cut(s) 30, 187, 247, 402, 491, 551, 719
FalI AAGNNNNNCTT 6 cut(s) 99, 131, 584, 616, 794, 826
FatI CATG 3 cut(s) 185, 549, 717
FauI CCCGC 1 cut(s) 115
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 5 cut(s) 64, 225, 408, 411, 651
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 5 cut(s) 64, 225, 408, 411, 651
FspBI CTAG 2 cut(s) 369, 747
GluI GCNGC 5 cut(s) 64, 225, 408, 411, 651
HaeIII GGCC 2 cut(s) 72, 138
Hin1II CATG 3 cut(s) 189, 553, 721
HinfI GANTC 4 cut(s) 284, 556, 750, 853
HphI GGTGA 2 cut(s) 139, 751
Hpy166II GTNNAC 3 cut(s) 147, 243, 666
Hpy188I TCNGA 3 cut(s) 88, 568, 672
Hpy188III TCNNGA 1 cut(s) 635
Hpy8I GTNNAC 3 cut(s) 147, 243, 666
Hpy99I CGWCG 1 cut(s) 467
HpyAV CCTTC 2 cut(s) 160, 271
HpyCH4III ACNGT 5 cut(s) 463, 703, 736, 778, 791
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 6 cut(s) 224, 233, 473, 539, 650, 717
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 230
HpyF3I CTNAG 3 cut(s) 24, 669, 820
HpySE526I ACGT 1 cut(s) 618
Hsp92II CATG 3 cut(s) 189, 553, 721
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 4 cut(s) 215, 236, 710, 724
LmnI GCTCC 2 cut(s) 173, 889
Lsp1109I GCAGC 4 cut(s) 75, 236, 422, 662
LweI GCATC 3 cut(s) 164, 559, 620
MaeI CTAG 2 cut(s) 369, 747
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 1 cut(s) 95
MalI GATC 4 cut(s) 217, 238, 712, 726
MboI GATC 4 cut(s) 215, 236, 710, 724
MboII GAAGA 3 cut(s) 214, 565, 655
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 5 cut(s) 273, 530, 562, 579, 861
MlyI GAGTC 2 cut(s) 565, 744
MmeI TCCRAC 2 cut(s) 111, 685
MnlI CCTC 9 cut(s) 22, 25, 84, 135, 203, 205, 487, 686, 701
MseI TTAA 4 cut(s) 305, 534, 771, 889
MslI CAYNNNNRTG 4 cut(s) 165, 488, 548, 627
MspA1I CMGCKG 3 cut(s) 122, 227, 413
Mva1269I GAATGC 2 cut(s) 259, 652
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 69, 230
NdeII GATC 4 cut(s) 215, 236, 710, 724
NlaIII CATG 3 cut(s) 189, 553, 721
NlaIV GGNNCC 2 cut(s) 72, 406
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 1 cut(s) 189
PciI ACATGT 1 cut(s) 185
PctI GAATGC 2 cut(s) 259, 652
PfeI GAWTC 2 cut(s) 284, 853
Pfl23II CGTACG 1 cut(s) 615
PkrI GCNGC 5 cut(s) 65, 226, 409, 412, 652
PleI GAGTC 2 cut(s) 564, 744
PpsI GAGTC 2 cut(s) 564, 744
PscI ACATGT 1 cut(s) 185
PshAI GACNNNNGTC 2 cut(s) 93, 802
PspLI CGTACG 1 cut(s) 615
PspN4I GGNNCC 2 cut(s) 72, 406
PspOMI GGGCCC 1 cut(s) 70
PspPI GGNCC 3 cut(s) 70, 71, 136
PsrI GAACNNNNNNTAC 2 cut(s) 292, 324
PstI CTGCAG 1 cut(s) 226
PvuII CAGCTG 2 cut(s) 227, 413
RsaI GTAC 5 cut(s) 242, 310, 362, 617, 788
RsaNI GTAC 5 cut(s) 241, 309, 361, 616, 787
RseI CAYNNNNRTG 4 cut(s) 165, 488, 548, 627
SaqAI TTAA 4 cut(s) 305, 534, 771, 889
SatI GCNGC 5 cut(s) 64, 225, 408, 411, 651
Sau3AI GATC 4 cut(s) 215, 236, 710, 724
Sau96I GGNCC 3 cut(s) 70, 71, 136
SchI GAGTC 2 cut(s) 565, 744
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 3 cut(s) 164, 559, 620
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 4 cut(s) 165, 488, 548, 627
Sse9I AATT 5 cut(s) 273, 530, 562, 579, 861
SsiI CCGC 5 cut(s) 122, 171, 198, 408, 784
SspMI CTAG 2 cut(s) 369, 747
StyI CCWWGG 2 cut(s) 132, 837
TaaI ACNGT 5 cut(s) 463, 703, 736, 778, 791
TaiI ACGT 1 cut(s) 621
TaqI TCGA 1 cut(s) 753
TasI AATT 5 cut(s) 273, 530, 562, 579, 861
TatI WGTACW 1 cut(s) 360
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 2 cut(s) 284, 853
Tru1I TTAA 4 cut(s) 305, 534, 771, 889
Tru9I TTAA 4 cut(s) 305, 534, 771, 889
TscAI CASTG 2 cut(s) 660, 741
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 4 cut(s) 63, 224, 410, 650
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 333, 566, 611
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 2 cut(s) 660, 741
XapI RAATTY 1 cut(s) 530
XceI RCATGY 1 cut(s) 189
XspI CTAG 2 cut(s) 369, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.