Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006148

Physical Location & Seq

Genomic Coordinates Reverse (-)

13182274 .. 13186881

Gene Structure 4608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09900.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGGCCCAAGGCACATCGGCCCTTTTCTACTCCCTTACCTTCCCTCCCCTTCTTCGTCTTCCAACGCAAGCTTTTGGAGCCAAAAAATTGTTGGCCATGGCGAACAGCGAAACTTCCGCCGATACTGCCCGGCCCTGGCAGTCCTACAACACCGTTTACACGAACGCCAAAGCCGGTATGGAAGGCGTCGACAAGGAAAGAGTTCAGAGGATAGTGTACGAAATGAGCAAAGGATCGCAGTACTTCAAAAACGAGGAACGCAAAGAGGCCTTCATCAGGGAGAAGATAGAAAACATGCGAGCTCGGTGCGCGAAGCTCAAACCAGCAGACCTGGATCACTTCCAAACGGTTGCTGATAAAAGAATTTTGGAGCTTGAAGCCACGCGGGACCTTTCAAGGATTTGGGTACATGTGGATATGGATGCTTTCTATGCGGCTGTCGAGACTTTGAGCGACCCGTCGTTGAAGGGGAAGCCCATGGCTGTTGGTGGCATGTCTATGATCTCCACTGCTAATTATGAGGCAAGGAAGTTTGGGGTTCGTGCTGCGATGCCTGGTTTCATTGCTCGTAAATTATGTCCCGACTTAATTTTTGTGCCTACGGATTTCGAGAAGTATAATCATTACAGTAGTTTAAATAGAAAAGTATATCAGAAGTATGATCCTAACTTCCTCGCTGCTAGTCTGGACGAAGCATATCTTGATGTAACTGAGGTTTGCAAAGAAAGGGGCACTACTGGTGAAGAAATTGCAAAAGAACTCAGAGCTGGTGTTTATGAAGTGACTGGTCTTACATGCAGTGCTGGAGTGGCACCAAACCGTCTACTTGCTAAGGTTTGTTCAGATATAAAGAAGCCAAATGGACAGTTTGTTTTACCAAATAATCGGGTGGCTGTCATGACATTTATATCCTCTCTTCCTGTCCGAAAGATTGGGGGCATCGGTAAAGTAACTGAGCATATATTGAAGGATGCTCTTGGGATTAGTACATGTGAGGAGATTCTGCAAAAGAGCAGTTTAATTTGTGCGCTATTTTCTCAATCTGCAGCAGATTTTTTCCTCTCAGTGGGACTTGCCATCGGGGGAACAGATACTCCTGAAGCAAGATTGAGAAAAAGTATAAGTAATGAGAGATCATTTTCAGCCACAGGGGATGAAGCATATATTTATCGCAAATTGGCGGATATTGCAGAGATGCTATCTACTGATTTGCAAAAGGAGGGTCTTTGTGGGCGAACATTGACTCTAAAACTAAAGACAGCATCGTTTGGGGTTCGCACCAGAGCTGTGACTTCGCAAAAATATATATGCTCGACTGAGGATATTTTGAAACATGCTTCAAAGTTGCTTAAGACTGAACTTCCGATTTCTTTGAGGCTGATAGGCTTGCGGGTGTCTCACTTTGATGAAGAAAAGGTTGGTGCTCCATCTGATCCCACACAGAGAACTCTCACCGATTATATTTTATCAGGAAATGTTTTAAGGAAAAATGTGGAGAATCAGAGCTCCTTGGAAATGGATACTAATGGTCGCTGTATGATGCATGGTGAAGAACCCTGTTTATTTGAATATGGCCATCAAACTTCTCGAGATTCTCTTGATGGAAACCACTTAGTAAATTTGGACGACAGTAAGTTTACTTTGGAAAATTTTGATGAAAAGGAAGAAGTTTATGAATCTACGAGCAGTGTAAATGCAGAAACGGTGTGTGTGGACGTACAGAACGAGGACAACGTTCAGGGTGGAGTGTCACCATTGTTGGAAGCAGGTCATTCTTTTTCTGGGCAGTTTGAGGGCAGTACCCTAGACAGAGTGAATAATGTAACTAACAACCGTGAGGACGTTGCAAGTTGTTCGGTCAGTCAGAAAGAGTTACTTTTGTGGTTGAATGACTACAAGTGTTCGATATGCGGGATAGAAATGCCAGCTAGCTTCGTTGAGGAAAGGCAAGAGCACTTTGATTTTCATCTTGCTGAGAAGCTTCAGAAAGAAGAATCTGGTGCTGACTCAACATGTGTGCTGAAGCAGAGAAACCTTGTCAGAAATGTCGAGAAGAATCATCGTACAAGCCAAAGGAAAAACAAAAGGCCGAAGCTGTCCCAGAAAGAAGGCAAACATATACCTATCGATTCATTTTTCGTTAGGAGCAACCAGAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0016020 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019985 GO:0032501 GO:0032502 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03460 ko05200 ko05202 ko05210 ko05212 ko05213 ko05214 ko05216 ko05217 ko05218 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map03460 map05200 map05202 map05210 map05212 map05213 map05214 map05216 map05217 map05218 map05220 map05222 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

IMS IMS_C IMS_HHH

Protein Analysis

721

Amino Acids

80.43

Weight (kDa)

6.45

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980
fragaria_vesca	FvH4_2g04350
malus_domestica	MD05G1100500.v1.1
prunus_persica	Prupe.8G144900_v2.0.a1 Prupe.8G144900_v2.0.a1
pyrus_communis	pycom05g09900
rosa_chinensis	RchiOBHm_Chr6g0253811
rosa_laevigata	RLG00000014968
rosa_multiflora	Rmu_sc0006323.1_g000020
rosa_roxburghii	Rroxscaffold_7G00211500
rosa_rugosa	Rorug05G0547400 Rorug05G0547500 Rorug05G0547600
rosa_samantha	Rh6AG063000 Rh6BG056300 Rh6CG056400 Rh6DG054200
rosa_wichuraiana	Rw6G005610 Rw6G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1757
AccB1I	GGYRCC	1 cut(s)	811
AccI	GTMKAC	2 cut(s)	189, 823
AccII	CGCG	2 cut(s)	311, 385
AciI	CCGC	6 cut(s)	117, 385, 434, 1181, 1390, 1911
AclI	AACGTT	1 cut(s)	1734
AclWI	GGATC	4 cut(s)	241, 342, 656, 1427
AcoI	YGGCCR	2 cut(s)	93, 1573
AcsI	RAATTY	3 cut(s)	363, 1618, 1648
AcuI	CTGAAG	3 cut(s)	1119, 1967, 2042
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	7 cut(s)	218, 242, 408, 988, 1719, 1801, 2065
AfiI	CCNNNNNNNGG	3 cut(s)	135, 276, 1066
AflII	CTTAAG	1 cut(s)	1349
AflIII	ACRYGT	3 cut(s)	409, 989, 2012
AgsI	TTSAA	9 cut(s)	247, 377, 396, 466, 967, 1330, 1341, 1568, 1888
AjnI	CCWGG	3 cut(s)	134, 330, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	1401, 1433
AloI	GAACNNNNNNTCC	2 cut(s)	1078, 1110
Alw21I	GWGCWC	4 cut(s)	304, 1426, 1508, 1956
Alw26I	GTCTC	2 cut(s)	437, 1401
AlwI	GGATC	4 cut(s)	241, 342, 656, 1427
Ama87I	CYCGRG	1 cut(s)	1587
AoxI	GGCC	7 cut(s)	3, 18, 93, 131, 267, 1573, 2087
ApeKI	GCWGC	3 cut(s)	545, 677, 1046
ApoI	RAATTY	3 cut(s)	363, 1618, 1648
ArsI	GACNNNNNNTTYG	4 cut(s)	575, 607, 1207, 1239
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	2 cut(s)	311, 1030
AspS9I	GGNCC	4 cut(s)	4, 19, 132, 388
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	4 cut(s)	752, 1444, 1559, 1743
AsuNHI	GCTAGC	1 cut(s)	1928
AvaI	CYCGRG	1 cut(s)	1587
AvaII	GGWCC	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	734
BalI	TGGCCA	2 cut(s)	95, 1575
BanI	GGYRCC	1 cut(s)	811
BanII	GRGCYC	2 cut(s)	304, 1508
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	4 cut(s)	304, 1426, 1508, 1956
BbvI	GCAGC	3 cut(s)	532, 664, 1058
BccI	CCATC	4 cut(s)	1085, 1435, 1584, 1595
BcgI	CGANNNNNNTGC	4 cut(s)	288, 322, 1836, 1870
BciT130I	CCWGG	3 cut(s)	136, 332, 555
BciVI	GTATCC	1 cut(s)	1513
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	437, 1401
BfaI	CTAG	4 cut(s)	681, 1805, 1929, 2161
BfmI	CTRYAG	1 cut(s)	1044
BfrI	CTTAAG	1 cut(s)	1349
BfuAI	ACCTGC	1 cut(s)	1757
BfuI	GTATCC	1 cut(s)	1513
BisI	GCNGC	4 cut(s)	435, 546, 678, 1047
BlsI	GCNGC	4 cut(s)	436, 547, 679, 1048
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	4 cut(s)	130, 136, 332, 555
Bme18I	GGWCC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	1587
BmgT120I	GGNCC	4 cut(s)	4, 19, 132, 388
BmiI	GGNNCC	3 cut(s)	79, 389, 813
BmrFI	CCNGG	4 cut(s)	130, 136, 332, 555
BmsI	GCATC	7 cut(s)	412, 540, 948, 961, 1185, 1271, 1530
BmtI	GCTAGC	1 cut(s)	1932
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	825
Bpu10I	CCTNAGC	1 cut(s)	831
BpuMI	CCSGG	1 cut(s)	130
Bsa29I	ATCGAT	1 cut(s)	2127
BsaBI	GATNNNNATC	1 cut(s)	1965
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	5 cut(s)	7, 96, 134, 477, 1509
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 1078, 1108
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 276, 1066
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	742, 790
Bse3DI	GCAATG	1 cut(s)	561
Bse8I	GATNNNNATC	1 cut(s)	1965
BseBI	CCWGG	3 cut(s)	136, 332, 555
BseCI	ATCGAT	1 cut(s)	2127
BseDI	CCNNGG	5 cut(s)	7, 96, 134, 477, 1509
BseGI	GGATG	3 cut(s)	427, 976, 1159
BseJI	GATNNNNATC	1 cut(s)	1965
BseLI	CCNNNNNNNGG	3 cut(s)	135, 276, 1066
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	6 cut(s)	702, 775, 945, 1077, 1308, 1965
BseNI	ACTGG	2 cut(s)	742, 790
BseRI	GAGGAG	1 cut(s)	1010
BseSI	GKGCMC	1 cut(s)	734
BseXI	GCAGC	3 cut(s)	532, 664, 1058
Bsh1236I	CGCG	2 cut(s)	311, 385
BshFI	GGCC	7 cut(s)	5, 20, 95, 133, 269, 1575, 2089
BshNI	GGYRCC	1 cut(s)	811
BshVI	ATCGAT	1 cut(s)	2127
BsiHKAI	GWGCWC	4 cut(s)	304, 1426, 1508, 1956
BsiHKCI	CYCGRG	1 cut(s)	1587
BsiSI	CCGG	2 cut(s)	130, 174
BslFI	GGGAC	4 cut(s)	401, 564, 1083, 2083
BslI	CCNNNNNNNGG	3 cut(s)	135, 276, 1066
BsmAI	GTCTC	2 cut(s)	437, 1401
BsmFI	GGGAC	4 cut(s)	401, 564, 1083, 2083
BsnI	GGCC	7 cut(s)	5, 20, 95, 133, 269, 1575, 2089
BsoBI	CYCGRG	1 cut(s)	1587
Bsp1286I	GDGCHC	5 cut(s)	304, 734, 1426, 1508, 1956
Bsp143I	GATC	6 cut(s)	233, 334, 501, 661, 1133, 1432
Bsp19I	CCATGG	2 cut(s)	96, 477
BspACI	CCGC	6 cut(s)	117, 385, 434, 1181, 1390, 1911
BspANI	GGCC	7 cut(s)	5, 20, 95, 133, 269, 1575, 2089
BspCNI	CTCAG	6 cut(s)	703, 774, 946, 1076, 1309, 1966
BspDI	ATCGAT	1 cut(s)	2127
BspFNI	CGCG	2 cut(s)	311, 385
BspHI	TCATGA	1 cut(s)	897
BspLI	GGNNCC	3 cut(s)	79, 389, 813
BspMAI	CTGCAG	1 cut(s)	1048
BspMI	ACCTGC	1 cut(s)	1757
BspOI	GCTAGC	1 cut(s)	1932
BspPI	GGATC	4 cut(s)	241, 342, 656, 1427
BspT107I	GGYRCC	1 cut(s)	811
BspTI	CTTAAG	1 cut(s)	1349
BsrDI	GCAATG	1 cut(s)	561
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	742, 790
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	5 cut(s)	7, 96, 134, 477, 1509
BssMI	GATC	6 cut(s)	233, 334, 501, 661, 1133, 1432
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	4 cut(s)	7, 96, 477, 1509
Bst2UI	CCWGG	3 cut(s)	136, 332, 555
Bst4CI	ACNGT	8 cut(s)	154, 349, 629, 821, 867, 1631, 1705, 1835
Bst6I	CTCTTC	1 cut(s)	921
BstACI	GRCGYC	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	1349
BstC8I	GCNNGC	5 cut(s)	69, 300, 1388, 1926, 1930
BstDEI	CTNAG	8 cut(s)	711, 761, 831, 954, 1063, 1317, 1612, 1974
BstDSI	CCRYGG	2 cut(s)	96, 477
BstENI	CCTNNNNNAGG	1 cut(s)	274
BstF5I	GGATG	3 cut(s)	427, 976, 1159
BstFNI	CGCG	2 cut(s)	311, 385
BstHHI	GCGC	2 cut(s)	311, 1030
BstKTI	GATC	6 cut(s)	236, 337, 504, 664, 1136, 1435
BstMAI	GTCTC	2 cut(s)	437, 1401
BstMBI	GATC	6 cut(s)	233, 334, 501, 661, 1133, 1432
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 125, 308, 431, 809, 1187
BstNI	CCWGG	3 cut(s)	136, 332, 555
BstNSI	RCATGY	7 cut(s)	298, 413, 496, 798, 993, 1337, 2016
BstSCI	CCNGG	4 cut(s)	128, 134, 330, 553
BstSFI	CTRYAG	1 cut(s)	1044
BstSLI	GKGCMC	1 cut(s)	734
BstUI	CGCG	2 cut(s)	311, 385
BstV1I	GCAGC	3 cut(s)	532, 664, 1058
BstV2I	GAAGAC	1 cut(s)	50
Bsu15I	ATCGAT	1 cut(s)	2127
BsuI	GTATCC	1 cut(s)	1513
BsuRI	GGCC	7 cut(s)	5, 20, 95, 133, 269, 1575, 2089
BsuTUI	ATCGAT	1 cut(s)	2127
BtgI	CCRYGG	2 cut(s)	96, 477
BtgZI	GCGATG	1 cut(s)	563
BtsCI	GGATG	3 cut(s)	427, 976, 1159
BtsI	GCAGTG	3 cut(s)	507, 805, 1693
BtsIMutI	CAGTG	4 cut(s)	507, 805, 1071, 1693
BveI	ACCTGC	1 cut(s)	1757
Cac8I	GCNNGC	5 cut(s)	69, 300, 1388, 1926, 1930
CciI	TCATGA	1 cut(s)	897
CfoI	GCGC	2 cut(s)	311, 1030
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	4 cut(s)	4, 19, 132, 388
ClaI	ATCGAT	1 cut(s)	2127
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	7 cut(s)	217, 241, 407, 987, 1718, 1800, 2064
CviQI	GTAC	7 cut(s)	217, 241, 407, 987, 1718, 1800, 2064
DdeI	CTNAG	8 cut(s)	711, 761, 831, 954, 1063, 1317, 1612, 1974
DpnI	GATC	6 cut(s)	235, 336, 503, 663, 1135, 1434
DpnII	GATC	6 cut(s)	233, 334, 501, 661, 1133, 1432
DraI	TTTAAA	1 cut(s)	636
EaeI	YGGCCR	2 cut(s)	93, 1573
Eam1104I	CTCTTC	1 cut(s)	921
EarI	CTCTTC	1 cut(s)	921
EciI	GGCGGA	2 cut(s)	106, 1196
Ecl136II	GAGCTC	2 cut(s)	302, 1506
Eco130I	CCWWGG	4 cut(s)	7, 96, 477, 1509
Eco147I	AGGCCT	1 cut(s)	269
Eco24I	GRGCYC	2 cut(s)	304, 1508
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	2 cut(s)	302, 1506
Eco57I	CTGAAG	3 cut(s)	1119, 1967, 2042
Eco88I	CYCGRG	1 cut(s)	1587
EcoICRI	GAGCTC	2 cut(s)	302, 1506
EcoNI	CCTNNNNNAGG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	3 cut(s)	134, 330, 553
EcoT14I	CCWWGG	4 cut(s)	7, 96, 477, 1509
EcoT22I	ATGCAT	1 cut(s)	1545
EcoT38I	GRGCYC	2 cut(s)	304, 1508
ErhI	CCWWGG	4 cut(s)	7, 96, 477, 1509
FalI	AAGNNNNNCTT	4 cut(s)	684, 716, 1860, 1892
FaqI	GGGAC	4 cut(s)	401, 564, 1083, 2083
FauI	CCCGC	3 cut(s)	378, 1383, 1904
FblI	GTMKAC	2 cut(s)	189, 823
Fnu4HI	GCNGC	4 cut(s)	435, 546, 678, 1047
FokI	GGATG	3 cut(s)	434, 983, 1166
FriOI	GRGCYC	2 cut(s)	304, 1508
Fsp4HI	GCNGC	4 cut(s)	435, 546, 678, 1047
FspBI	CTAG	4 cut(s)	681, 1805, 1929, 2161
GlaI	GCGC	2 cut(s)	310, 1029
GluI	GCNGC	4 cut(s)	435, 546, 678, 1047
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	7 cut(s)	5, 20, 95, 133, 269, 1575, 2089
HapII	CCGG	2 cut(s)	130, 174
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	311, 1030
Hin1I	GRCGYC	1 cut(s)	186
Hin6I	GCGC	2 cut(s)	309, 1028
HinP1I	GCGC	2 cut(s)	309, 1028
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	2 cut(s)	69, 1979
HinfI	GANTC	9 cut(s)	1000, 1243, 1498, 1592, 1676, 1994, 2006, 2056, 2129
HpaII	CCGG	2 cut(s)	130, 174
HphI	GGTGA	4 cut(s)	752, 1444, 1559, 1743
Hpy166II	GTNNAC	6 cut(s)	157, 190, 217, 824, 1638, 1714
Hpy8I	GTNNAC	6 cut(s)	157, 190, 217, 824, 1638, 1714
Hpy99I	CGWCG	2 cut(s)	191, 463
HpyAV	CCTTC	7 cut(s)	49, 59, 176, 280, 460, 961, 2102
HpyCH4III	ACNGT	8 cut(s)	154, 349, 629, 821, 867, 1631, 1705, 1835
HpyCH4IV	ACGT	3 cut(s)	1716, 1734, 1842
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 125, 308, 431, 809, 1187
HpyF3I	CTNAG	8 cut(s)	711, 761, 831, 954, 1063, 1317, 1612, 1974
HpySE526I	ACGT	3 cut(s)	1716, 1734, 1842
Hsp92I	GRCGYC	1 cut(s)	186
HspAI	GCGC	2 cut(s)	309, 1028
Kzo9I	GATC	6 cut(s)	233, 334, 501, 661, 1133, 1432
LmnI	GCTCC	5 cut(s)	77, 370, 1429, 1511, 2145
Lsp1109I	GCAGC	3 cut(s)	532, 664, 1058
LweI	GCATC	7 cut(s)	412, 540, 948, 961, 1185, 1271, 1530
MaeI	CTAG	4 cut(s)	681, 1805, 1929, 2161
MaeII	ACGT	3 cut(s)	1716, 1734, 1842
MaeIII	GTNAC	7 cut(s)	706, 781, 949, 1288, 1749, 1822, 1872
MalI	GATC	6 cut(s)	235, 336, 503, 663, 1135, 1434
MboI	GATC	6 cut(s)	233, 334, 501, 661, 1133, 1432
MhlI	GDGCHC	5 cut(s)	304, 734, 1426, 1508, 1956
MlsI	TGGCCA	2 cut(s)	95, 1575
MluNI	TGGCCA	2 cut(s)	95, 1575
MlyI	GAGTC	2 cut(s)	1237, 2000
MmeI	TCCRAC	2 cut(s)	86, 1740
Mox20I	TGGCCA	2 cut(s)	95, 1575
Mph1103I	ATGCAT	1 cut(s)	1545
MroXI	GAANNNNTTC	1 cut(s)	201
MscI	TGGCCA	2 cut(s)	95, 1575
MseI	TTAA	5 cut(s)	587, 635, 1019, 1350, 1481
MslI	CAYNNNNRTG	2 cut(s)	497, 1404
Msp20I	TGGCCA	2 cut(s)	95, 1575
MspCI	CTTAAG	1 cut(s)	1349
MspI	CCGG	2 cut(s)	130, 174
MspR9I	CCNGG	4 cut(s)	130, 136, 332, 555
MvaI	CCWGG	3 cut(s)	136, 332, 555
MvnI	CGCG	2 cut(s)	311, 385
MwoI	GCNNNNNNNGC	6 cut(s)	77, 125, 308, 431, 809, 1187
NciI	CCSGG	1 cut(s)	130
NcoI	CCATGG	2 cut(s)	96, 477
NdeII	GATC	6 cut(s)	233, 334, 501, 661, 1133, 1432
NheI	GCTAGC	1 cut(s)	1928
NlaIV	GGNNCC	3 cut(s)	79, 389, 813
NmuCI	GTSAC	3 cut(s)	781, 1288, 1749
NsiI	ATGCAT	1 cut(s)	1545
NspI	RCATGY	7 cut(s)	298, 413, 496, 798, 993, 1337, 2016
PaeR7I	CTCGAG	1 cut(s)	1587
PagI	TCATGA	1 cut(s)	897
PceI	AGGCCT	1 cut(s)	269
PciI	ACATGT	3 cut(s)	409, 989, 2012
PcsI	WCGNNNNNNNCGW	2 cut(s)	1722, 1731
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	7 cut(s)	1000, 1498, 1592, 1676, 1994, 2056, 2129
PkrI	GCNGC	4 cut(s)	436, 547, 679, 1048
PleI	GAGTC	2 cut(s)	1237, 2000
PpsI	GAGTC	2 cut(s)	1237, 2000
PpuMI	RGGWCCY	1 cut(s)	388
PscI	ACATGT	3 cut(s)	409, 989, 2012
Psp124BI	GAGCTC	2 cut(s)	304, 1508
Psp1406I	AACGTT	1 cut(s)	1734
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	3 cut(s)	134, 330, 553
PspGI	CCWGG	3 cut(s)	134, 330, 553
PspN4I	GGNNCC	3 cut(s)	79, 389, 813
PspPI	GGNCC	4 cut(s)	4, 19, 132, 388
PspPPI	RGGWCCY	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	1048
RsaI	GTAC	7 cut(s)	218, 242, 408, 988, 1719, 1801, 2065
RsaNI	GTAC	7 cut(s)	217, 241, 407, 987, 1718, 1800, 2064
RseI	CAYNNNNRTG	2 cut(s)	497, 1404
SacI	GAGCTC	2 cut(s)	304, 1508
SalI	GTCGAC	1 cut(s)	188
SaqAI	TTAA	5 cut(s)	587, 635, 1019, 1350, 1481
SatI	GCNGC	4 cut(s)	435, 546, 678, 1047
Sau3AI	GATC	6 cut(s)	233, 334, 501, 661, 1133, 1432
Sau96I	GGNCC	4 cut(s)	4, 19, 132, 388
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	2 cut(s)	1237, 2000
ScrFI	CCNGG	4 cut(s)	130, 136, 332, 555
SduI	GDGCHC	5 cut(s)	304, 734, 1426, 1508, 1956
SfaNI	GCATC	7 cut(s)	412, 540, 948, 961, 1185, 1271, 1530
SfcI	CTRYAG	1 cut(s)	1044
Sfr274I	CTCGAG	1 cut(s)	1587
SinI	GGWCC	1 cut(s)	388
SlaI	CTCGAG	1 cut(s)	1587
SmiMI	CAYNNNNRTG	2 cut(s)	497, 1404
SmlI	CTYRAG	2 cut(s)	1349, 1587
SmoI	CTYRAG	2 cut(s)	1349, 1587
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	6 cut(s)	117, 385, 434, 1181, 1390, 1911
SspMI	CTAG	4 cut(s)	681, 1805, 1929, 2161
SstI	GAGCTC	2 cut(s)	304, 1508
StuI	AGGCCT	1 cut(s)	269
StyD4I	CCNGG	4 cut(s)	128, 134, 330, 553
StyI	CCWWGG	4 cut(s)	7, 96, 477, 1509
TaaI	ACNGT	8 cut(s)	154, 349, 629, 821, 867, 1631, 1705, 1835
TaiI	ACGT	3 cut(s)	1719, 1737, 1845
TaqI	TCGA	8 cut(s)	189, 441, 609, 1313, 1588, 1904, 2049, 2127
TaqII	GACCGA	1 cut(s)	1846
TatI	WGTACW	2 cut(s)	240, 986
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	7 cut(s)	1000, 1498, 1592, 1676, 1994, 2056, 2129
Tru1I	TTAA	5 cut(s)	587, 635, 1019, 1350, 1481
Tru9I	TTAA	5 cut(s)	587, 635, 1019, 1350, 1481
TscAI	CASTG	4 cut(s)	514, 805, 1071, 1693
TseFI	GTSAC	3 cut(s)	781, 1288, 1749
TseI	GCWGC	3 cut(s)	545, 677, 1046
Tsp45I	GTSAC	3 cut(s)	781, 1288, 1749
TspDTI	ATGAA	9 cut(s)	262, 550, 792, 1170, 1422, 1671, 1689, 1955, 2121
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	4 cut(s)	514, 805, 1071, 1693
Vha464I	CTTAAG	1 cut(s)	1349
VpaK11BI	GGWCC	1 cut(s)	388
XagI	CCTNNNNNAGG	1 cut(s)	274
XapI	RAATTY	3 cut(s)	363, 1618, 1648
XceI	RCATGY	7 cut(s)	298, 413, 496, 798, 993, 1337, 2016
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 175
XhoI	CTCGAG	1 cut(s)	1587
XmiI	GTMKAC	2 cut(s)	189, 823
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	4 cut(s)	681, 1805, 1929, 2161
ZrmI	AGTACT	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	1545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.