Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006148

Physical Location & Seq

Genomic Coordinates Forward (+)

73683675 .. 73684055

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0547500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGGACCATACTTATCATATGCGTTATTGGCTTTGTGTTGATGGTGGCATCTCTGCAAGCAGATGCTAAACGGTTTGTTTTGAATGACCGTCACTTGGTTCAAGTTAAGAATGAGCCAACTCTGCGTCGAAGCGCCGAGGCTCTTGCTAGTGGCGGTGCAAAAGATCAATCTCAGTCTCAGCCCCGGACCACAAACAAGAGTAGCAGCAACAGCGATGCTAAGCATGATGATCATGCCGACGATGATTCAATCATTCAAACGAGACTTATGGTAAGTCCGGACATGGCTCTTCCGAAAATGGTGAGAGCCATTTTTTTTATCGGCGATACGTACATGAGATCCCCCAGGATTCCTGGTGCTGGCAATGGACCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0016020 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019985 GO:0032501 GO:0032502 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03460 ko05200 ko05202 ko05210 ko05212 ko05213 ko05214 ko05216 ko05217 ko05218 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map03460 map05200 map05202 map05210 map05212 map05213 map05214 map05216 map05217 map05218 map05220 map05222 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

IMS IMS_C IMS_HHH

Protein Analysis

126

Amino Acids

13.82

Weight (kDa)

9.35

Isoelectric Point (pI)

55.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980
fragaria_vesca	FvH4_2g04350
malus_domestica	MD05G1100500.v1.1
prunus_persica	Prupe.8G144900_v2.0.a1 Prupe.8G144900_v2.0.a1
pyrus_communis	pycom05g09900
rosa_chinensis	RchiOBHm_Chr6g0253811
rosa_laevigata	RLG00000014968
rosa_multiflora	Rmu_sc0006323.1_g000020
rosa_roxburghii	Rroxscaffold_7G00211500
rosa_rugosa	Rorug05G0547400 Rorug05G0547500 Rorug05G0547600
rosa_samantha	Rh6AG063000 Rh6BG056300 Rh6CG056400 Rh6DG054200
rosa_wichuraiana	Rw6G005610 Rw6G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	336
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	97, 362
AgsI	TTSAA	4 cut(s)	85, 104, 252, 260
AjnI	CCWGG	2 cut(s)	347, 355
Alw26I	GTCTC	2 cut(s)	183, 259
AlwI	GGATC	1 cut(s)	336
Aor13HI	TCCGGA	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	3 cut(s)	6, 189, 371
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	3 cut(s)	6, 189, 371
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	2 cut(s)	349, 357
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	2 cut(s)	183, 259
BfaI	CTAG	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	1 cut(s)	208
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	3 cut(s)	187, 349, 357
Bme18I	GGWCC	3 cut(s)	6, 189, 371
BmgT120I	GGNCC	3 cut(s)	6, 189, 371
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	3 cut(s)	187, 349, 357
BmsI	GCATC	3 cut(s)	55, 59, 208
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	187
BsaAI	YACGTR	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	138, 185, 347
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 362
Bse3DI	GCAATG	1 cut(s)	373
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	349, 357
BseDI	CCNNGG	3 cut(s)	138, 185, 347
BseLI	CCNNNNNNNGG	2 cut(s)	97, 362
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	188, 194
BseXI	GCAGC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	187, 281
BslI	CCNNNNNNNGG	2 cut(s)	97, 362
BsmAI	GTCTC	2 cut(s)	183, 259
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	166, 232, 341
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	187, 193
BspEI	TCCGGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	373
BspPI	GGATC	1 cut(s)	336
BspQI	GCTCTTC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	138, 185, 347
BssMI	GATC	3 cut(s)	166, 232, 341
Bst2UI	CCWGG	2 cut(s)	349, 357
Bst4CI	ACNGT	2 cut(s)	75, 92
Bst6I	CTCTTC	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	60, 364
BstDEI	CTNAG	3 cut(s)	174, 180, 222
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	3 cut(s)	169, 235, 344
BstMAI	GTCTC	2 cut(s)	183, 259
BstMBI	GATC	3 cut(s)	166, 232, 341
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 124, 213
BstNI	CCWGG	2 cut(s)	349, 357
BstSCI	CCNGG	3 cut(s)	185, 347, 355
BstSNI	TACGTA	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	60, 364
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	6, 189, 371
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	4 cut(s)	227, 236, 286, 337
CviJI	RGCY	6 cut(s)	33, 118, 143, 184, 290, 311
CviKI_1	RGCY	6 cut(s)	33, 118, 143, 184, 290, 311
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	3 cut(s)	174, 180, 222
DpnI	GATC	3 cut(s)	168, 234, 343
DpnII	GATC	3 cut(s)	166, 232, 341
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco105I	TACGTA	1 cut(s)	333
Eco47I	GGWCC	3 cut(s)	6, 189, 371
EcoRII	CCWGG	2 cut(s)	347, 355
FaeI	CATG	4 cut(s)	230, 239, 289, 340
FaiI	YATR	8 cut(s)	11, 20, 22, 228, 237, 272, 287, 338
FatI	CATG	4 cut(s)	226, 235, 285, 336
FauNDI	CATATG	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	208
HaeII	RGCGCY	1 cut(s)	138
HapII	CCGG	2 cut(s)	187, 281
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	230, 239, 289, 340
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	248, 352
HpaII	CCGG	2 cut(s)	187, 281
HphI	GGTGA	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	1 cut(s)	281
Hpy99I	CGWCG	2 cut(s)	132, 245
HpyCH4III	ACNGT	2 cut(s)	75, 92
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	2 cut(s)	58, 161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 124, 213
HpyF3I	CTNAG	3 cut(s)	174, 180, 222
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	4 cut(s)	230, 239, 289, 340
HspAI	GCGC	1 cut(s)	135
Kpn2I	TCCGGA	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	166, 232, 341
LguI	GCTCTTC	1 cut(s)	297
LpnPI	CCDG	7 cut(s)	200, 294, 334, 342, 348, 361, 369
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	3 cut(s)	55, 59, 208
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	3 cut(s)	168, 234, 343
MboI	GATC	3 cut(s)	166, 232, 341
MboII	GAAGA	1 cut(s)	284
MflI	RGATCY	1 cut(s)	341
MnlI	CCTC	1 cut(s)	133
MroI	TCCGGA	1 cut(s)	280
MseI	TTAA	2 cut(s)	108, 379
MspI	CCGG	2 cut(s)	187, 281
MspR9I	CCNGG	3 cut(s)	187, 349, 357
MvaI	CCWGG	2 cut(s)	349, 357
MwoI	GCNNNNNNNGC	3 cut(s)	30, 124, 213
NciI	CCSGG	1 cut(s)	187
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	3 cut(s)	166, 232, 341
NlaIII	CATG	4 cut(s)	230, 239, 289, 340
NlaIV	GGNNCC	1 cut(s)	373
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	248, 352
PkrI	GCNGC	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	333
Psp6I	CCWGG	2 cut(s)	347, 355
PspGI	CCWGG	2 cut(s)	347, 355
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	3 cut(s)	6, 189, 371
PsuI	RGATCY	1 cut(s)	341
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	108, 379
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	3 cut(s)	166, 232, 341
Sau96I	GGNCC	3 cut(s)	6, 189, 371
ScrFI	CCNGG	3 cut(s)	187, 349, 357
SetI	ASST	1 cut(s)	335
SfaNI	GCATC	3 cut(s)	55, 59, 208
SinI	GGWCC	3 cut(s)	6, 189, 371
SnaBI	TACGTA	1 cut(s)	333
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	3 cut(s)	185, 347, 355
TaaI	ACNGT	2 cut(s)	75, 92
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	1 cut(s)	130
TfiI	GAWTC	2 cut(s)	248, 352
Tru1I	TTAA	2 cut(s)	108, 379
Tru9I	TTAA	2 cut(s)	108, 379
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	92
VpaK11BI	GGWCC	3 cut(s)	6, 189, 371
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.