Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006148

Physical Location & Seq

Genomic Coordinates Forward (+)

73688549 .. 73688911

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0547600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAGGACCATACTTACCATATGCGTCGTTGGCTTTGTGTTTATGGTGGCATCTCTACAAGCCGATGCTAAACGGTTTGTTTTGCATGACCGTCACTTGGCTCAAGTTACAAATGATCCAAATATGGATCAAGCCCCTGAGGTTCTTGCTAGTGGTGATGCAAAAGATCATCAGTCTCAGTCTCAGTCCCAGACCACAAGCAAGGGTAGCAGCAACAGCGATGCTAAGCATGATGATCATGCCGACGATGATGTGAACGATAGTTATGGTAAGTCCGGACATGGCTCTTCCGAAAGTGACTCTCATAGTGGATATGGACTTGCATGCAATATTGGAGATCGAAAGAGGCCTCATTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0016020 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019985 GO:0032501 GO:0032502 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03460 ko05200 ko05202 ko05210 ko05212 ko05213 ko05214 ko05216 ko05217 ko05218 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map03460 map05200 map05202 map05210 map05212 map05213 map05214 map05216 map05217 map05218 map05220 map05222 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

IMS IMS_C IMS_HHH

Protein Analysis

120

Amino Acids

12.93

Weight (kDa)

5.63

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980
fragaria_vesca	FvH4_2g04350
malus_domestica	MD05G1100500.v1.1
prunus_persica	Prupe.8G144900_v2.0.a1 Prupe.8G144900_v2.0.a1
pyrus_communis	pycom05g09900
rosa_chinensis	RchiOBHm_Chr6g0253811
rosa_laevigata	RLG00000014968
rosa_multiflora	Rmu_sc0006323.1_g000020
rosa_roxburghii	Rroxscaffold_7G00211500
rosa_rugosa	Rorug05G0547400 Rorug05G0547500 Rorug05G0547600
rosa_samantha	Rh6AG063000 Rh6BG056300 Rh6CG056400 Rh6DG054200
rosa_wichuraiana	Rw6G005610 Rw6G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	275
AclWI	GGATC	2 cut(s)	110, 135
AfiI	CCNNNNNNNGG	1 cut(s)	97
Alw26I	GTCTC	2 cut(s)	180, 186
AlwI	GGATC	2 cut(s)	110, 135
Aor13HI	TCCGGA	1 cut(s)	275
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	6
AxyI	CCTNAGG	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	222
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	180, 186
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	211
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmsI	GCATC	4 cut(s)	55, 59, 148, 211
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse21I	CCTNAGG	1 cut(s)	138
BseAI	TCCGGA	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	3 cut(s)	129, 191, 197
BseXI	GCAGC	1 cut(s)	222
BshFI	GGCC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	180, 186
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	349
Bsp13I	TCCGGA	1 cut(s)	275
Bsp143I	GATC	5 cut(s)	115, 127, 166, 235, 337
Bsp1720I	GCTNAGC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	3 cut(s)	130, 190, 196
BspEI	TCCGGA	1 cut(s)	275
BspPI	GGATC	2 cut(s)	110, 135
BspQI	GCTCTTC	1 cut(s)	292
BssMI	GATC	5 cut(s)	115, 127, 166, 235, 337
Bst4CI	ACNGT	2 cut(s)	75, 92
Bst6I	CTCTTC	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	4 cut(s)	138, 177, 183, 225
BstKTI	GATC	5 cut(s)	118, 130, 169, 238, 340
BstMAI	GTCTC	2 cut(s)	180, 186
BstMBI	GATC	5 cut(s)	115, 127, 166, 235, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 207, 216
BstNSI	RCATGY	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	349
BtgZI	GCGATG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	1 cut(s)	13
CviAII	CATG	5 cut(s)	86, 230, 239, 281, 324
CviJI	RGCY	6 cut(s)	33, 62, 101, 134, 285, 349
CviKI_1	RGCY	6 cut(s)	33, 62, 101, 134, 285, 349
DdeI	CTNAG	4 cut(s)	138, 177, 183, 225
DpnI	GATC	5 cut(s)	117, 129, 168, 237, 339
DpnII	GATC	5 cut(s)	115, 127, 166, 235, 337
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco147I	AGGCCT	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	138
FaeI	CATG	5 cut(s)	89, 233, 242, 284, 327
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	5 cut(s)	85, 229, 238, 280, 323
FauNDI	CATATG	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	349
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	5 cut(s)	89, 233, 242, 284, 327
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	276
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	2 cut(s)	29, 248
HpyCH4III	ACNGT	2 cut(s)	75, 92
HpyCH4V	TGCA	4 cut(s)	85, 161, 323, 327
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 207, 216
HpyF3I	CTNAG	4 cut(s)	138, 177, 183, 225
Hsp92II	CATG	5 cut(s)	89, 233, 242, 284, 327
Kpn2I	TCCGGA	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	115, 127, 166, 235, 337
LguI	GCTCTTC	1 cut(s)	292
LpnPI	CCDG	3 cut(s)	150, 203, 289
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	4 cut(s)	55, 59, 148, 211
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	92, 106, 296
MalI	GATC	5 cut(s)	117, 129, 168, 237, 339
MboI	GATC	5 cut(s)	115, 127, 166, 235, 337
MboII	GAAGA	1 cut(s)	279
MluCI	AATT	1 cut(s)	358
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	3 cut(s)	133, 339, 360
MroI	TCCGGA	1 cut(s)	275
MseI	TTAA	1 cut(s)	361
MspI	CCGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	30, 207, 216
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	5 cut(s)	115, 127, 166, 235, 337
NlaIII	CATG	5 cut(s)	89, 233, 242, 284, 327
NmuCI	GTSAC	2 cut(s)	92, 296
NspI	RCATGY	1 cut(s)	327
PaeI	GCATGC	1 cut(s)	327
PceI	AGGCCT	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	6
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	5 cut(s)	115, 127, 166, 235, 337
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	293
SetI	ASST	1 cut(s)	144
SfaNI	GCATC	4 cut(s)	55, 59, 148, 211
SinI	GGWCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	1 cut(s)	358
SseBI	AGGCCT	1 cut(s)	349
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	75, 92
TaqI	TCGA	1 cut(s)	340
TasI	AATT	1 cut(s)	358
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TseFI	GTSAC	2 cut(s)	92, 296
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	2 cut(s)	92, 296
VpaK11BI	GGWCC	1 cut(s)	6
XceI	RCATGY	1 cut(s)	327
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.