Rroxscaffold_7G00211500

DNA polymerase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
61959897 .. 61964908
5012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211500.1

Sequence Viewer

Length: 1626 bp
ATGGCCAATTCAGAAACCGCCGGCGACGCCGCTCGGCCGTGGCAGTCCAACACCACCGTCTACACCAATGCCAAAGCCGGTATGGAAGGCGTGGATAAAGAGAAGGTTCAGAGAGTAGTGTATGAGATGAGTAAAGGGTCGGGGTATTTTAAGAACGAGGAGCGCAAGGAGGCTTTGATTAAGGAGAAGATAGAGAACATGCGTGCTCGGTGTGCAAAGCTCACCGCCGCAGATTTGGCTCACTATCAGAAGGTTGCTGATAAGAGACTTGTGGAGTTAGAAGCAATGCGTGACCTGTCGAGGGTTTGGATACATGTGGATATGGATGCTTTCTATGCAGCTGTTGAGACTTTAAGTGACCCGTCGTTGAAGGGAAAGCCCATGGCTGTTGGTGGCAAGGAGATTTGGGTTCGAGCTGCAATGCCTGGCTTCATTGCTCGTAAATTATGTCCGGAGTTAGTTTTTGTTCCAACAGATTTCAAGAAGTACACTTATTACAGTGATTTAACTAGAAAAGTGTTTCGGAAGTATGATCCTAACTTCCTGGCTGCTAGTTTAGACGAAGCGTACCTTGATGTTACTGAGGTTTGCAAAGAAAAGGGCACTACTGGGGAAGAAATTGCCAAAGAACTCAGAGATGGTGTTAATGAAGAGACTGGTCTAACATGTAGCGCTGGAGTAGCACCAAACCGTCTACTTGCTAAGGTTTGCTCTGATATAAACAAGCCGAATGGACAGTTTATTTTACCAAGCAATCGAATGGCTGTGATGACATTTATATCCTCACTTCCTGTACGAAAGATTGGGGGGATTGGAAAAGTCACTGAACATATTTTAAGGGATGCTCTTGGAATTAGTACTTGCGAGGAGATTCTGCAAAAGAGCAGTTATATCTGTGCACTATTTTCTCATTCTACGGCAGATTTTTTCCTCTCTGTGGGACTTGCCATCGGGAGGACAGGTACTCCTGAAGTCAGATTGAGGAAAAGTATAAGTAACGAGAGGACATTTTCAGCCACAGGGGATGAAACATTTCTCTATCGTAAATTAGCTGAGATCGCAGAGATGCTATCTACTGACTTGCAAAAGGAGGGCCTTTTTGGGCGTACGTTGACTCTTAAACTCAAAACCGCATCTTTTGAGGCTGATAGGGGTAATGCAAGTGCTGAAAAGATAAATTCAAATGACATACAGACTGGGGAAAATGTACAAAACAGAGTTTCACCATTGTTGAGAGTAGGTTATTCTTTTCATGGGAACTCTGAGGGCAGTAGCATAGACAGAGAAAATAGTGTAACTAGCAGTCTTCAGGATTTTCCAATTCCTTCATCTCATCAGGAAGAGTTGCTTTTGTGGGTGGATGACTACAAGTGCTCGATATGTGGAATAGAAGTGCCACCAGATTTTGTTGAAGAACGGCAAGAACACTTTGATTTTCATCTTGCCGAGAAGCTTCAAAACGATGAATCTGGCATTAACCTAAGAACTTCCATGCCAAAGCAGAGAACTGTAAACAAGAATCACGATTTGAGCAGAAGGAAACACAAAAAGCATAAATCATCTCCAAAAGAAAGCAAACACATACCTATTGATGTGTTCTTTGTTAAGAGCAGTCAGAACTTCTAA

Protein Analysis

541

Amino Acids

60.6

Weight (kDa)

7.58

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMS PF00817 106 - 239 1.8e-36 impB/mucB/samB family
IMS_C PF11799 328 - 385 1.6e-09 impB/mucB/samB family C-terminal domain
zf_UBZ PF18439 454 - 487 2.5e-07 Ubiquitin-Binding Zinc Finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 32
AccI GTMKAC 2 cut(s) 60, 694
AccIII TCCGGA 1 cut(s) 451
AciI CCGC 5 cut(s) 18, 30, 225, 228, 1131
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 2 cut(s) 3, 35
AcsI RAATTY 1 cut(s) 1177
AcuI CTGAAG 2 cut(s) 990, 1292
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 7 cut(s) 488, 569, 795, 859, 964, 1108, 1209
AfeI AGCGCT 1 cut(s) 673
AfiI CCNNNNNNNGG 3 cut(s) 301, 937, 954
AflIII ACRYGT 2 cut(s) 313, 665
AgsI TTSAA 5 cut(s) 370, 481, 1182, 1412, 1457
AjnI CCWGG 2 cut(s) 424, 543
AluBI AGCT 5 cut(s) 220, 341, 416, 1052, 1453
AluI AGCT 5 cut(s) 220, 341, 416, 1052, 1453
Alw21I GWGCWC 3 cut(s) 208, 901, 1376
Alw26I GTCTC 3 cut(s) 259, 341, 647
Alw44I GTGCAC 1 cut(s) 897
AlwI GGATC 1 cut(s) 527
Aor13HI TCCGGA 1 cut(s) 451
Aor51HI AGCGCT 1 cut(s) 673
AoxI GGCC 3 cut(s) 3, 35, 1093
ApaLI GTGCAC 1 cut(s) 897
ApeKI GCWGC 3 cut(s) 338, 416, 548
ApoI RAATTY 1 cut(s) 1177
Asp700I GAANNNNTTC 1 cut(s) 1032
AspLEI GCGC 2 cut(s) 165, 674
AspS9I GGNCC 1 cut(s) 1093
AsuHPI GGTGA 2 cut(s) 214, 1215
BaeGI GKGCMC 2 cut(s) 605, 901
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 1298
Bbv12I GWGCWC 3 cut(s) 208, 901, 1376
BbvI GCAGC 3 cut(s) 350, 403, 535
BccI CCATC 2 cut(s) 632, 956
BceAI ACGGC 3 cut(s) 22, 933, 1433
BciT130I CCWGG 2 cut(s) 426, 545
BciVI GTATCC 1 cut(s) 303
BcoDI GTCTC 3 cut(s) 259, 341, 647
BfaI CTAG 3 cut(s) 510, 552, 1299
BfoI RGCGCY 1 cut(s) 675
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 5 cut(s) 30, 228, 339, 417, 549
BlsI GCNGC 5 cut(s) 31, 229, 340, 418, 550
BmcAI AGTACT 1 cut(s) 859
Bme1390I CCNGG 2 cut(s) 426, 545
BmgT120I GGNCC 1 cut(s) 1093
BmrFI CCNGG 2 cut(s) 426, 545
BmrI ACTGGG 2 cut(s) 618, 1206
BmsI GCATC 4 cut(s) 316, 832, 1056, 1142
BmuI ACTGGG 2 cut(s) 618, 1206
BpiI GAAGAC 1 cut(s) 1298
BpmI CTGGAG 1 cut(s) 696
Bpu10I CCTNAGC 1 cut(s) 702
BsaBI GATNNNNATC 1 cut(s) 1437
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 38, 381
BsaWI WCCGGW 1 cut(s) 451
BsaXI ACNNNNNCTCC 4 cut(s) 946, 949, 976, 979
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 937, 954
Bse118I RCCGGY 2 cut(s) 20, 77
Bse1I ACTGG 3 cut(s) 613, 661, 1201
Bse3DI GCAATG 3 cut(s) 291, 426, 432
Bse8I GATNNNNATC 1 cut(s) 1437
BseAI TCCGGA 1 cut(s) 451
BseBI CCWGG 2 cut(s) 426, 545
BseDI CCNNGG 2 cut(s) 38, 381
BseGI GGATG 4 cut(s) 331, 847, 1030, 1366
BseJI GATNNNNATC 1 cut(s) 1437
BseLI CCNNNNNNNGG 3 cut(s) 301, 937, 954
BseMI GCAATG 3 cut(s) 291, 426, 432
BseMII CTCAG 4 cut(s) 573, 646, 1044, 1254
BseNI ACTGG 3 cut(s) 613, 661, 1201
BseRI GAGGAG 2 cut(s) 173, 881
BseSI GKGCMC 2 cut(s) 605, 901
BseX3I CGGCCG 1 cut(s) 35
BseXI GCAGC 3 cut(s) 350, 403, 535
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 3 cut(s) 5, 37, 1095
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 3 cut(s) 208, 901, 1376
BsiSI CCGG 3 cut(s) 21, 78, 452
BsiWI CGTACG 1 cut(s) 1106
BslFI GGGAC 1 cut(s) 954
BslI CCNNNNNNNGG 3 cut(s) 301, 937, 954
BsmAI GTCTC 3 cut(s) 259, 341, 647
BsmFI GGGAC 1 cut(s) 954
BsnI GGCC 3 cut(s) 5, 37, 1095
Bsp1286I GDGCHC 4 cut(s) 208, 605, 901, 1376
Bsp13I TCCGGA 1 cut(s) 451
Bsp1407I TGTACA 1 cut(s) 1207
Bsp143I GATC 2 cut(s) 532, 1056
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 5 cut(s) 18, 30, 225, 228, 1131
BspANI GGCC 3 cut(s) 5, 37, 1095
BspCNI CTCAG 4 cut(s) 574, 645, 1045, 1255
BspEI TCCGGA 1 cut(s) 451
BspPI GGATC 1 cut(s) 527
BsrBI CCGCTC 1 cut(s) 32
BsrDI GCAATG 3 cut(s) 291, 426, 432
BsrFI RCCGGY 2 cut(s) 20, 77
BsrGI TGTACA 1 cut(s) 1207
BsrI ACTGG 3 cut(s) 613, 661, 1201
BssAI RCCGGY 2 cut(s) 20, 77
BssECI CCNNGG 2 cut(s) 38, 381
BssMI GATC 2 cut(s) 532, 1056
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 381
Bst2UI CCWGG 2 cut(s) 426, 545
Bst4CI ACNGT 5 cut(s) 58, 500, 692, 738, 1510
Bst6I CTCTTC 2 cut(s) 645, 1335
BstACI GRCGYC 1 cut(s) 27
BstAUI TGTACA 1 cut(s) 1207
BstC8I GCNNGC 2 cut(s) 22, 204
BstDEI CTNAG 6 cut(s) 582, 632, 702, 1053, 1263, 1481
BstDSI CCRYGG 2 cut(s) 38, 381
BstF5I GGATG 4 cut(s) 331, 847, 1030, 1366
BstH2I RGCGCY 1 cut(s) 675
BstHHI GCGC 2 cut(s) 165, 674
BstKTI GATC 2 cut(s) 535, 1059
BstMAI GTCTC 3 cut(s) 259, 341, 647
BstMBI GATC 2 cut(s) 532, 1056
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 6 cut(s) 26, 212, 236, 335, 680, 1058
BstNI CCWGG 2 cut(s) 426, 545
BstNSI RCATGY 3 cut(s) 202, 317, 669
BstSCI CCNGG 2 cut(s) 424, 543
BstSLI GKGCMC 2 cut(s) 605, 901
BstV1I GCAGC 3 cut(s) 350, 403, 535
BstV2I GAAGAC 1 cut(s) 1298
BstZI CGGCCG 1 cut(s) 35
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 3 cut(s) 5, 37, 1095
BtgI CCRYGG 2 cut(s) 38, 381
BtsCI GGATG 4 cut(s) 331, 847, 1030, 1366
BtsIMutI CAGTG 2 cut(s) 505, 822
Cac8I GCNNGC 2 cut(s) 22, 204
CfoI GCGC 2 cut(s) 165, 674
Cfr10I RCCGGY 2 cut(s) 20, 77
Cfr13I GGNCC 1 cut(s) 1093
CseI GACGC 1 cut(s) 35
Csp6I GTAC 7 cut(s) 487, 568, 794, 858, 963, 1107, 1208
CviAII CATG 6 cut(s) 199, 314, 382, 666, 1253, 1492
CviQI GTAC 7 cut(s) 487, 568, 794, 858, 963, 1107, 1208
DdeI CTNAG 6 cut(s) 582, 632, 702, 1053, 1263, 1481
DpnI GATC 2 cut(s) 534, 1058
DpnII GATC 2 cut(s) 532, 1056
EaeI YGGCCR 2 cut(s) 3, 35
EagI CGGCCG 1 cut(s) 35
Eam1104I CTCTTC 2 cut(s) 645, 1335
EarI CTCTTC 2 cut(s) 645, 1335
EclXI CGGCCG 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 381
Eco47III AGCGCT 1 cut(s) 673
Eco52I CGGCCG 1 cut(s) 35
Eco57I CTGAAG 2 cut(s) 990, 1292
EcoO109I RGGNCCY 1 cut(s) 1093
EcoRII CCWGG 2 cut(s) 424, 543
EcoT14I CCWWGG 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 6 cut(s) 202, 317, 385, 669, 1256, 1495
FalI AAGNNNNNCTT 4 cut(s) 555, 587, 1332, 1364
FaqI GGGAC 1 cut(s) 954
FatI CATG 6 cut(s) 198, 313, 381, 665, 1252, 1491
FblI GTMKAC 2 cut(s) 60, 694
Fnu4HI GCNGC 5 cut(s) 30, 228, 339, 417, 549
FokI GGATG 4 cut(s) 338, 854, 1037, 1373
Fsp4HI GCNGC 5 cut(s) 30, 228, 339, 417, 549
FspBI CTAG 3 cut(s) 510, 552, 1299
GlaI GCGC 2 cut(s) 164, 673
GluI GCNGC 5 cut(s) 30, 228, 339, 417, 549
GsuI CTGGAG 1 cut(s) 696
HaeII RGCGCY 1 cut(s) 675
HaeIII GGCC 3 cut(s) 5, 37, 1095
HapII CCGG 3 cut(s) 21, 78, 452
HgaI GACGC 1 cut(s) 35
HhaI GCGC 2 cut(s) 165, 674
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 6 cut(s) 202, 317, 385, 669, 1256, 1495
Hin6I GCGC 2 cut(s) 163, 672
HinP1I GCGC 2 cut(s) 163, 672
HincII GTYRAC 1 cut(s) 1113
HindII GTYRAC 1 cut(s) 1113
HindIII AAGCTT 1 cut(s) 1451
HinfI GANTC 4 cut(s) 871, 1114, 1466, 1519
HpaII CCGG 3 cut(s) 21, 78, 452
HphI GGTGA 2 cut(s) 214, 1215
Hpy166II GTNNAC 6 cut(s) 61, 489, 695, 899, 1113, 1513
Hpy188I TCNGA 9 cut(s) 13, 111, 249, 525, 635, 715, 977, 1264, 1617
Hpy188III TCNNGA 7 cut(s) 452, 481, 952, 968, 1310, 1337, 1523
Hpy8I GTNNAC 6 cut(s) 61, 489, 695, 899, 1113, 1513
Hpy99I CGWCG 2 cut(s) 29, 367
HpyAV CCTTC 6 cut(s) 80, 97, 244, 364, 1335, 1530
HpyCH4III ACNGT 5 cut(s) 58, 500, 692, 738, 1510
HpyCH4IV ACGT 1 cut(s) 1109
HpyCH4V TGCA 8 cut(s) 215, 338, 419, 591, 877, 899, 1084, 1160
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 212, 236, 335, 680, 1058
HpyF3I CTNAG 6 cut(s) 582, 632, 702, 1053, 1263, 1481
HpySE526I ACGT 1 cut(s) 1109
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 6 cut(s) 202, 317, 385, 669, 1256, 1495
HspAI GCGC 2 cut(s) 163, 672
Kpn2I TCCGGA 1 cut(s) 451
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 2 cut(s) 532, 1056
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 3 cut(s) 350, 403, 535
LweI GCATC 4 cut(s) 316, 832, 1056, 1142
MaeI CTAG 3 cut(s) 510, 552, 1299
MaeII ACGT 1 cut(s) 1109
MaeIII GTNAC 6 cut(s) 290, 356, 577, 820, 995, 1294
MalI GATC 2 cut(s) 534, 1058
MbiI CCGCTC 1 cut(s) 32
MboI GATC 2 cut(s) 532, 1056
MboII GAAGA 6 cut(s) 199, 626, 662, 1298, 1352, 1424
MhlI GDGCHC 4 cut(s) 208, 605, 901, 1376
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 7, 443, 618, 852, 1046, 1177, 1320
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 1108
MmeI TCCRAC 2 cut(s) 72, 494
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 20
MroI TCCGGA 1 cut(s) 451
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 1032
MscI TGGCCA 1 cut(s) 5
MseI TTAA 9 cut(s) 150, 180, 353, 506, 645, 836, 1119, 1476, 1605
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 3 cut(s) 21, 78, 452
MspR9I CCNGG 2 cut(s) 426, 545
MvaI CCWGG 2 cut(s) 426, 545
MwoI GCNNNNNNNGC 6 cut(s) 26, 212, 236, 335, 680, 1058
NaeI GCCGGC 1 cut(s) 22
NcoI CCATGG 1 cut(s) 381
NdeII GATC 2 cut(s) 532, 1056
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 6 cut(s) 202, 317, 385, 669, 1256, 1495
NmeAIII GCCGAG 2 cut(s) 13, 1471
NmuCI GTSAC 3 cut(s) 290, 356, 820
NspI RCATGY 3 cut(s) 202, 317, 669
PciI ACATGT 2 cut(s) 313, 665
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 1032
PfeI GAWTC 3 cut(s) 871, 1466, 1519
Pfl23II CGTACG 1 cut(s) 1106
PkrI GCNGC 5 cut(s) 31, 229, 340, 418, 550
PleI GAGTC 1 cut(s) 1108
PpsI GAGTC 1 cut(s) 1108
PscI ACATGT 2 cut(s) 313, 665
Psp6I CCWGG 2 cut(s) 424, 543
PspGI CCWGG 2 cut(s) 424, 543
PspLI CGTACG 1 cut(s) 1106
PspPI GGNCC 1 cut(s) 1093
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 7 cut(s) 488, 569, 795, 859, 964, 1108, 1209
RsaNI GTAC 7 cut(s) 487, 568, 794, 858, 963, 1107, 1208
SaqAI TTAA 9 cut(s) 150, 180, 353, 506, 645, 836, 1119, 1476, 1605
SatI GCNGC 5 cut(s) 30, 228, 339, 417, 549
Sau3AI GATC 2 cut(s) 532, 1056
Sau96I GGNCC 1 cut(s) 1093
ScaI AGTACT 1 cut(s) 859
SchI GAGTC 1 cut(s) 1108
ScrFI CCNGG 2 cut(s) 426, 545
SduI GDGCHC 4 cut(s) 208, 605, 901, 1376
SfaNI GCATC 4 cut(s) 316, 832, 1056, 1142
SgrAI CRCCGGYG 1 cut(s) 20
Sse9I AATT 7 cut(s) 7, 443, 618, 852, 1046, 1177, 1320
SsiI CCGC 5 cut(s) 18, 30, 225, 228, 1131
SspMI CTAG 3 cut(s) 510, 552, 1299
StyD4I CCNGG 2 cut(s) 424, 543
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 5 cut(s) 58, 500, 692, 738, 1510
TaiI ACGT 1 cut(s) 1112
TaqI TCGA 4 cut(s) 299, 412, 757, 1376
TasI AATT 7 cut(s) 7, 443, 618, 852, 1046, 1177, 1320
TatI WGTACW 3 cut(s) 486, 857, 1207
TauI GCSGC 2 cut(s) 32, 230
TfiI GAWTC 3 cut(s) 871, 1466, 1519
Tru1I TTAA 9 cut(s) 150, 180, 353, 506, 645, 836, 1119, 1476, 1605
Tru9I TTAA 9 cut(s) 150, 180, 353, 506, 645, 836, 1119, 1476, 1605
TscAI CASTG 2 cut(s) 505, 829
TseFI GTSAC 3 cut(s) 290, 356, 820
TseI GCWGC 3 cut(s) 338, 416, 548
Tsp45I GTSAC 3 cut(s) 290, 356, 820
TspDTI ATGAA 7 cut(s) 421, 663, 1041, 1241, 1317, 1427, 1479
TspRI CASTG 2 cut(s) 505, 829
VneI GTGCAC 1 cut(s) 897
XapI RAATTY 1 cut(s) 1177
XceI RCATGY 3 cut(s) 202, 317, 669
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XmiI GTMKAC 2 cut(s) 60, 694
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 3 cut(s) 510, 552, 1299
ZrmI AGTACT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.