Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006148

Physical Location & Seq

Genomic Coordinates Forward (+)

73681175 .. 73682086

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0547400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTCTAATCATCTTCTTGGATCCATACCCTTTTCGATTTCAAAACCACCATCCAACGAGAATGTTTGCCAGGTACAGGAAAGTAAAGATAAGGCAGCTCCACAGAACGCTGTGACCTATGTCTATCAAGCTAAACTAGCCGGATTGTGCTGCAATGTCACAGCAACATGGGGCAAAGACCTCAAAAATCATTTCCTTTGCATCGAAGTGCCAAAGCCTTGTCAAGAAGCTCTCTACATTTGCAAGATTGACTTAAATTCTTGTCAATTGTGGGGCAAGAAAGGTCTCAAATCCTTCGACATAGATGGAAGACGAGTAGATGTTTACTGGGATTTTCGACAGGCAAAATTCTCTGGCAACCCGGAGCCATGTTCCGATTACTATGTTGCCTTGGTGTCCAAGGCAGAGGTGGTTTTACTGCTAGGGGATCTAGTGACAGATGCTTATAAGAGAACCAGATCAAAACCGGCTTTAGAAGAGGCTACATTGATGTACAAGAAGGAAGTTGTGTGTGGAAAAAGACTGTTTTGCTCCAAAGCCATGTTGGAAGTAGGGAGAGAAGAGCATGACATTGTCATTGAAGCTTCACTATCAGGGCCTAATGATCCTGAAATGTGGATTACTGTAGACGGGACAATGACGATTCGGATCATGAACTTGAATTGGAGATTTAGAGGGAATGAGAGTGTGATGTTGAATGATTTTCCAGTTGAAATTTTGTGGGATGTGTATGATTGGTTGTTTAGTAAACAAGCCACAGGCCAAGGCTTGTTCATTTTCAAGCCAGGCAGGCTTGATTGGGAGTCTAGTCATAGCGACCCTGGTAGTAGAAATTCTGAATACAACTCACCAAAAGAGAGCTCATCAACTATAGAGTTTTGCCATTTTCTTTATGCCTGGAAAACTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0016020 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019985 GO:0032501 GO:0032502 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03460 ko05200 ko05202 ko05210 ko05212 ko05213 ko05214 ko05216 ko05217 ko05218 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map03460 map05200 map05202 map05210 map05212 map05213 map05214 map05216 map05217 map05218 map05220 map05222 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

IMS IMS_C IMS_HHH

Protein Analysis

303

Amino Acids

34.44

Weight (kDa)

5.84

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF868	PF05910	34 - 301	1.3e-91	Plant protein of unknown function (DUF868)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980 AT1G49980
fragaria_vesca	FvH4_2g04350
malus_domestica	MD05G1100500.v1.1
prunus_persica	Prupe.8G144900_v2.0.a1 Prupe.8G144900_v2.0.a1
pyrus_communis	pycom05g09900
rosa_chinensis	RchiOBHm_Chr6g0253811
rosa_laevigata	RLG00000014968
rosa_multiflora	Rmu_sc0006323.1_g000020
rosa_roxburghii	Rroxscaffold_7G00211500
rosa_rugosa	Rorug05G0547400 Rorug05G0547500 Rorug05G0547600
rosa_samantha	Rh6AG063000 Rh6BG056300 Rh6CG056400 Rh6DG054200
rosa_wichuraiana	Rw6G005610 Rw6G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AccI	GTMKAC	1 cut(s)	627
AclWI	GGATC	5 cut(s)	15, 28, 435, 599, 656
AcsI	RAATTY	4 cut(s)	256, 347, 714, 832
AfaI	GTAC	2 cut(s)	75, 494
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	6 cut(s)	42, 581, 661, 697, 713, 781
AjnI	CCWGG	4 cut(s)	69, 784, 820, 896
AluBI	AGCT	5 cut(s)	98, 131, 230, 584, 861
AluI	AGCT	5 cut(s)	98, 131, 230, 584, 861
Alw21I	GWGCWC	1 cut(s)	863
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	5 cut(s)	15, 28, 435, 599, 656
AoxI	GGCC	2 cut(s)	596, 760
ApeKI	GCWGC	2 cut(s)	95, 150
ApoI	RAATTY	4 cut(s)	256, 347, 714, 832
AspS9I	GGNCC	1 cut(s)	596
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	840
BamHI	GGATCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	863
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	863
BbvI	GCAGC	2 cut(s)	107, 137
BccI	CCATC	2 cut(s)	58, 299
BciT130I	CCWGG	4 cut(s)	71, 786, 822, 898
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	4 cut(s)	137, 422, 431, 807
BfmI	CTRYAG	2 cut(s)	624, 870
BglI	GCCNNNNNGGC	1 cut(s)	790
BisI	GCNGC	2 cut(s)	96, 151
BlsI	GCNGC	2 cut(s)	97, 152
Bme1390I	CCNGG	5 cut(s)	71, 362, 786, 822, 898
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	2 cut(s)	22, 366
BmrFI	CCNGG	5 cut(s)	71, 362, 786, 822, 898
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	210, 430
BmuI	ACTGGG	1 cut(s)	337
BoxI	GACNNNNGTC	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	316
BpuMI	CCSGG	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	647
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	4 cut(s)	390, 399, 763, 820
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	466
Bse1I	ACTGG	2 cut(s)	332, 707
Bse3DI	GCAATG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	647
BseBI	CCWGG	4 cut(s)	71, 786, 822, 898
BseDI	CCNNGG	4 cut(s)	390, 399, 763, 820
BseGI	GGATG	2 cut(s)	50, 730
BseJI	GATNNNNATC	1 cut(s)	647
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	2 cut(s)	332, 707
BseXI	GCAGC	2 cut(s)	107, 137
BshFI	GGCC	2 cut(s)	598, 762
BsiHKAI	GWGCWC	1 cut(s)	863
BsiSI	CCGG	3 cut(s)	141, 362, 467
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	2 cut(s)	598, 762
Bso31I	GGTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	5 cut(s)	20, 427, 458, 604, 648
BspANI	GGCC	2 cut(s)	598, 762
BspCNI	CTCAG	1 cut(s)	898
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	2 cut(s)	22, 366
BspPI	GGATC	5 cut(s)	15, 28, 435, 599, 656
BspQI	GCTCTTC	1 cut(s)	555
BspTNI	GGTCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	2 cut(s)	332, 707
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	4 cut(s)	390, 399, 763, 820
BssMI	GATC	5 cut(s)	20, 427, 458, 604, 648
BssT1I	CCWWGG	3 cut(s)	390, 399, 763
Bst2UI	CCWGG	4 cut(s)	71, 786, 822, 898
Bst4CI	ACNGT	2 cut(s)	525, 625
Bst6I	CTCTTC	2 cut(s)	471, 555
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	791
BstDEI	CTNAG	1 cut(s)	906
BstF5I	GGATG	2 cut(s)	50, 730
BstKTI	GATC	5 cut(s)	23, 430, 461, 607, 651
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	5 cut(s)	20, 427, 458, 604, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 790
BstNI	CCWGG	4 cut(s)	71, 786, 822, 898
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	5 cut(s)	69, 360, 784, 820, 896
BstSFI	CTRYAG	2 cut(s)	624, 870
BstV1I	GCAGC	2 cut(s)	107, 137
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	2 cut(s)	20, 427
BstYI	RGATCY	2 cut(s)	20, 427
BsuRI	GGCC	2 cut(s)	598, 762
BtsCI	GGATG	2 cut(s)	50, 730
Cac8I	GCNNGC	1 cut(s)	791
CciI	TCATGA	1 cut(s)	651
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	596
Csp6I	GTAC	2 cut(s)	74, 493
CviAII	CATG	5 cut(s)	168, 369, 541, 566, 652
CviQI	GTAC	2 cut(s)	74, 493
DdeI	CTNAG	1 cut(s)	906
DpnI	GATC	5 cut(s)	22, 429, 460, 606, 650
DpnII	GATC	5 cut(s)	20, 427, 458, 604, 648
Eam1104I	CTCTTC	2 cut(s)	471, 555
EarI	CTCTTC	2 cut(s)	471, 555
Ecl136II	GAGCTC	1 cut(s)	861
Eco130I	CCWWGG	3 cut(s)	390, 399, 763
Eco24I	GRGCYC	1 cut(s)	863
Eco31I	GGTCTC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	861
EcoICRI	GAGCTC	1 cut(s)	861
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRII	CCWGG	4 cut(s)	69, 784, 820, 896
EcoT14I	CCWWGG	3 cut(s)	390, 399, 763
EcoT38I	GRGCYC	1 cut(s)	863
ErhI	CCWWGG	3 cut(s)	390, 399, 763
FaeI	CATG	5 cut(s)	171, 372, 544, 569, 655
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	5 cut(s)	167, 368, 540, 565, 651
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	2 cut(s)	96, 151
FokI	GGATG	2 cut(s)	37, 737
FriOI	GRGCYC	1 cut(s)	863
Fsp4HI	GCNGC	2 cut(s)	96, 151
FspBI	CTAG	4 cut(s)	137, 422, 431, 807
GluI	GCNGC	2 cut(s)	96, 151
HaeIII	GGCC	2 cut(s)	598, 762
HapII	CCGG	3 cut(s)	141, 362, 467
Hin1II	CATG	5 cut(s)	171, 372, 544, 569, 655
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	2 cut(s)	643, 803
HpaII	CCGG	3 cut(s)	141, 362, 467
HphI	GGTGA	1 cut(s)	840
Hpy166II	GTNNAC	3 cut(s)	325, 628, 749
Hpy188I	TCNGA	3 cut(s)	376, 648, 838
Hpy188III	TCNNGA	3 cut(s)	224, 608, 652
Hpy8I	GTNNAC	3 cut(s)	325, 628, 749
HpyAV	CCTTC	2 cut(s)	304, 493
HpyCH4III	ACNGT	2 cut(s)	525, 625
HpyCH4V	TGCA	3 cut(s)	153, 201, 243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 790
HpyF3I	CTNAG	1 cut(s)	906
Hsp92II	CATG	5 cut(s)	171, 372, 544, 569, 655
Kzo9I	GATC	5 cut(s)	20, 427, 458, 604, 648
LguI	GCTCTTC	1 cut(s)	555
LmnI	GCTCC	3 cut(s)	103, 364, 536
Lsp1109I	GCAGC	2 cut(s)	107, 137
LweI	GCATC	2 cut(s)	210, 430
MaeI	CTAG	4 cut(s)	137, 422, 431, 807
MaeIII	GTNAC	3 cut(s)	112, 157, 433
MalI	GATC	5 cut(s)	22, 429, 460, 606, 650
MboI	GATC	5 cut(s)	20, 427, 458, 604, 648
MboII	GAAGA	4 cut(s)	5, 321, 488, 572
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	2 cut(s)	20, 427
MhlI	GDGCHC	1 cut(s)	863
MluCI	AATT	6 cut(s)	256, 266, 347, 661, 714, 832
MlyI	GAGTC	1 cut(s)	812
MmeI	TCCRAC	2 cut(s)	78, 525
MnlI	CCTC	4 cut(s)	191, 400, 472, 668
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	3 cut(s)	141, 362, 467
MspR9I	CCNGG	5 cut(s)	71, 362, 786, 822, 898
MunI	CAATTG	1 cut(s)	266
MvaI	CCWGG	4 cut(s)	71, 786, 822, 898
MwoI	GCNNNNNNNGC	2 cut(s)	137, 790
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	5 cut(s)	20, 427, 458, 604, 648
NlaIII	CATG	5 cut(s)	171, 372, 544, 569, 655
NlaIV	GGNNCC	2 cut(s)	22, 366
NmuCI	GTSAC	3 cut(s)	112, 157, 433
PagI	TCATGA	1 cut(s)	651
PciSI	GCTCTTC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	643
PflFI	GACNNNGTC	1 cut(s)	572
PkrI	GCNGC	2 cut(s)	97, 152
PleI	GAGTC	1 cut(s)	811
PpsI	GAGTC	1 cut(s)	811
PshAI	GACNNNNGTC	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	863
Psp6I	CCWGG	4 cut(s)	69, 784, 820, 896
PspGI	CCWGG	4 cut(s)	69, 784, 820, 896
PspN4I	GGNNCC	2 cut(s)	22, 366
PspPI	GGNCC	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	20, 427
PsyI	GACNNNGTC	1 cut(s)	572
RsaI	GTAC	2 cut(s)	75, 494
RsaNI	GTAC	2 cut(s)	74, 493
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	863
SapI	GCTCTTC	1 cut(s)	555
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	2 cut(s)	96, 151
Sau3AI	GATC	5 cut(s)	20, 427, 458, 604, 648
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	5 cut(s)	71, 362, 786, 822, 898
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	2 cut(s)	210, 430
SfcI	CTRYAG	2 cut(s)	624, 870
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	6 cut(s)	256, 266, 347, 661, 714, 832
SspMI	CTAG	4 cut(s)	137, 422, 431, 807
SstI	GAGCTC	1 cut(s)	863
StyD4I	CCNGG	5 cut(s)	69, 360, 784, 820, 896
StyI	CCWWGG	3 cut(s)	390, 399, 763
TaaI	ACNGT	2 cut(s)	525, 625
TaqI	TCGA	4 cut(s)	35, 204, 297, 337
TasI	AATT	6 cut(s)	256, 266, 347, 661, 714, 832
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseFI	GTSAC	3 cut(s)	112, 157, 433
TseI	GCWGC	2 cut(s)	95, 150
Tsp45I	GTSAC	3 cut(s)	112, 157, 433
TspDTI	ATGAA	2 cut(s)	668, 763
Tth111I	GACNNNGTC	1 cut(s)	572
XapI	RAATTY	4 cut(s)	256, 347, 714, 832
XcmI	CCANNNNNNNNNTGG	2 cut(s)	406, 541
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	4 cut(s)	137, 422, 431, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.