Translocase of chloroplast
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G16640 AT2G16640 AT2G16640 AT3G16620 |
| fragaria_vesca | FvH4_2g01650 FvH4_2g01650 |
| malus_domestica | MD05G1117800.v1.1 MD10G1120800.v1.1 |
| prunus_persica | Prupe.8G162300_v2.0.a1 Prupe.8G162300_v2.0.a1 |
| pyrus_communis | pycom05g11180 pycom10g10400 |
| rosa_chinensis | RchiOBHm_Chr6g0244541 |
| rosa_laevigata | RLG00000015350 |
| rosa_multiflora | Rmu_co8516985.1_g000001 Rmu_sc0003679.1_g000009 Rmu_sc0017888.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00215770 |
| rosa_rugosa | Rorug05G0509200 |
| rosa_samantha | Rh6AG024900 Rh6BG019800 Rh6CG017300 Rh6DG018300 |
| rosa_wichuraiana | Rw6G002030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2425 |
| Acc16I | TGCGCA | 1 cut(s) | 2300 |
| Acc36I | ACCTGC | 1 cut(s) | 713 |
| AccB1I | GGYRCC | 2 cut(s) | 1904, 2401 |
| AciI | CCGC | 5 cut(s) | 647, 713, 1823, 1937, 2405 |
| AclWI | GGATC | 3 cut(s) | 2365, 2374, 2374 |
| AcsI | RAATTY | 5 cut(s) | 157, 878, 931, 1579, 1787 |
| AcuI | CTGAAG | 9 cut(s) | 54, 125, 138, 798, 870, 969, 1155, 1497, 1754 |
| AfaI | GTAC | 6 cut(s) | 1665, 1687, 1853, 1984, 2110, 2130 |
| AfeI | AGCGCT | 1 cut(s) | 2210 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1642, 1730, 2331, 2389 |
| AflII | CTTAAG | 1 cut(s) | 770 |
| AflIII | ACRYGT | 1 cut(s) | 2420 |
| AjnI | CCWGG | 3 cut(s) | 2146, 2162, 2172 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1246, 1278 |
| AleI | CACNNNNGTG | 1 cut(s) | 1526 |
| Alw26I | GTCTC | 1 cut(s) | 1748 |
| AlwI | GGATC | 3 cut(s) | 2365, 2374, 2374 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1169 |
| Ama87I | CYCGRG | 1 cut(s) | 1674 |
| Aor51HI | AGCGCT | 1 cut(s) | 2210 |
| AoxI | GGCC | 4 cut(s) | 1618, 1894, 2322, 2391 |
| ApaI | GGGCCC | 1 cut(s) | 2395 |
| ApeKI | GCWGC | 9 cut(s) | 163, 166, 197, 200, 498, 1631, 1873, 1876, 2470 |
| ApoI | RAATTY | 5 cut(s) | 157, 878, 931, 1579, 1787 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1500, 1767 |
| AspA2I | CCTAGG | 1 cut(s) | 1655 |
| AspLEI | GCGC | 4 cut(s) | 2024, 2211, 2301, 2486 |
| AspS9I | GGNCC | 5 cut(s) | 1720, 1894, 2322, 2391, 2392 |
| AsuC2I | CCSGG | 2 cut(s) | 1221, 2475 |
| AsuHPI | GGTGA | 7 cut(s) | 23, 221, 341, 371, 694, 1307, 1448 |
| AsuNHI | GCTAGC | 1 cut(s) | 973 |
| AvaI | CYCGRG | 1 cut(s) | 1674 |
| AvaII | GGWCC | 1 cut(s) | 1720 |
| AvrII | CCTAGG | 1 cut(s) | 1655 |
| AxyI | CCTNAGG | 1 cut(s) | 2387 |
| BaeGI | GKGCMC | 1 cut(s) | 2395 |
| BanI | GGYRCC | 2 cut(s) | 1904, 2401 |
| BanII | GRGCYC | 1 cut(s) | 2395 |
| BauI | CACGAG | 2 cut(s) | 1235, 1758 |
| BbsI | GAAGAC | 2 cut(s) | 968, 2195 |
| BbvCI | CCTCAGC | 1 cut(s) | 1425 |
| BbvI | GCAGC | 9 cut(s) | 175, 178, 184, 187, 510, 1618, 1863, 1885, 2482 |
| BceAI | ACGGC | 1 cut(s) | 1881 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1448, 1482, 2443, 2477 |
| BciT130I | CCWGG | 3 cut(s) | 2148, 2164, 2174 |
| BciVI | GTATCC | 1 cut(s) | 1042 |
| BclI | TGATCA | 1 cut(s) | 1417 |
| BcnI | CCSGG | 2 cut(s) | 1221, 2475 |
| BcoDI | GTCTC | 1 cut(s) | 1748 |
| BfaI | CTAG | 3 cut(s) | 974, 1656, 2411 |
| BfmI | CTRYAG | 2 cut(s) | 591, 828 |
| BfoI | RGCGCY | 1 cut(s) | 2212 |
| BfrI | CTTAAG | 1 cut(s) | 770 |
| BfuAI | ACCTGC | 1 cut(s) | 713 |
| BfuI | GTATCC | 1 cut(s) | 1042 |
| BglII | AGATCT | 2 cut(s) | 853, 1326 |
| BlnI | CCTAGG | 1 cut(s) | 1655 |
| BlpI | GCTNAGC | 1 cut(s) | 1869 |
| Bme1390I | CCNGG | 5 cut(s) | 1221, 2148, 2164, 2174, 2475 |
| Bme18I | GGWCC | 1 cut(s) | 1720 |
| BmeT110I | CYCGRG | 1 cut(s) | 1674 |
| BmgT120I | GGNCC | 5 cut(s) | 1720, 1894, 2322, 2391, 2392 |
| BmiI | GGNNCC | 9 cut(s) | 783, 1384, 1647, 1722, 1895, 1906, 2323, 2393, 2403 |
| BmrFI | CCNGG | 5 cut(s) | 1221, 2148, 2164, 2174, 2475 |
| BmsI | GCATC | 9 cut(s) | 184, 751, 1066, 1078, 1156, 1240, 1678, 1961, 2056 |
| BmtI | GCTAGC | 1 cut(s) | 977 |
| BpiI | GAAGAC | 2 cut(s) | 968, 2195 |
| BpmI | CTGGAG | 1 cut(s) | 2214 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1425, 1842 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1869 |
| BpuEI | CTTGAG | 4 cut(s) | 620, 852, 958, 1967 |
| BpuMI | CCSGG | 2 cut(s) | 1221, 2475 |
| Bsa29I | ATCGAT | 1 cut(s) | 2369 |
| BsaJI | CCNNGG | 4 cut(s) | 1621, 1655, 2173, 2474 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 402, 432 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1642, 1730, 2331, 2389 |
| Bse1I | ACTGG | 3 cut(s) | 416, 712, 821 |
| Bse21I | CCTNAGG | 1 cut(s) | 2387 |
| Bse3DI | GCAATG | 2 cut(s) | 1464, 1938 |
| BseBI | CCWGG | 3 cut(s) | 2148, 2164, 2174 |
| BseCI | ATCGAT | 1 cut(s) | 2369 |
| BseDI | CCNNGG | 4 cut(s) | 1621, 1655, 2173, 2474 |
| BseGI | GGATG | 9 cut(s) | 115, 199, 577, 655, 745, 961, 1384, 1669, 2104 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1642, 1730, 2331, 2389 |
| BseMI | GCAATG | 2 cut(s) | 1464, 1938 |
| BseMII | CTCAG | 9 cut(s) | 216, 542, 777, 1344, 1347, 1439, 1856, 1860, 2378 |
| BseNI | ACTGG | 3 cut(s) | 416, 712, 821 |
| BseRI | GAGGAG | 7 cut(s) | 89, 356, 855, 941, 1133, 1757, 2186 |
| BseSI | GKGCMC | 1 cut(s) | 2395 |
| BseXI | GCAGC | 9 cut(s) | 175, 178, 184, 187, 510, 1618, 1863, 1885, 2482 |
| BsgI | GTGCAG | 1 cut(s) | 1539 |
| BshFI | GGCC | 4 cut(s) | 1620, 1896, 2324, 2393 |
| BshNI | GGYRCC | 2 cut(s) | 1904, 2401 |
| BshVI | ATCGAT | 1 cut(s) | 2369 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1674 |
| BsiSI | CCGG | 2 cut(s) | 1220, 2474 |
| BslFI | GGGAC | 3 cut(s) | 1581, 2095, 2190 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1642, 1730, 2331, 2389 |
| BsmAI | GTCTC | 1 cut(s) | 1748 |
| BsmFI | GGGAC | 3 cut(s) | 1581, 2095, 2190 |
| BsmI | GAATGC | 1 cut(s) | 25 |
| BsnI | GGCC | 4 cut(s) | 1620, 1896, 2324, 2393 |
| BsoBI | CYCGRG | 1 cut(s) | 1674 |
| Bsp120I | GGGCCC | 1 cut(s) | 2391 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2395 |
| Bsp1407I | TGTACA | 1 cut(s) | 1851 |
| Bsp143I | GATC | 7 cut(s) | 853, 1326, 1417, 2366, 2370, 2379, 2437 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1869 |
| BspACI | CCGC | 5 cut(s) | 647, 713, 1823, 1937, 2405 |
| BspANI | GGCC | 4 cut(s) | 1620, 1896, 2324, 2393 |
| BspCNI | CTCAG | 9 cut(s) | 217, 541, 778, 1343, 1348, 1438, 1855, 1861, 2379 |
| BspDI | ATCGAT | 1 cut(s) | 2369 |
| BspHI | TCATGA | 1 cut(s) | 2489 |
| BspLI | GGNNCC | 9 cut(s) | 783, 1384, 1647, 1722, 1895, 1906, 2323, 2393, 2403 |
| BspMI | ACCTGC | 1 cut(s) | 713 |
| BspOI | GCTAGC | 1 cut(s) | 977 |
| BspPI | GGATC | 3 cut(s) | 2365, 2374, 2374 |
| BspQI | GCTCTTC | 1 cut(s) | 1473 |
| BspT107I | GGYRCC | 2 cut(s) | 1904, 2401 |
| BspTI | CTTAAG | 1 cut(s) | 770 |
| BsrDI | GCAATG | 2 cut(s) | 1464, 1938 |
| BsrGI | TGTACA | 1 cut(s) | 1851 |
| BsrI | ACTGG | 3 cut(s) | 416, 712, 821 |
| BssECI | CCNNGG | 4 cut(s) | 1621, 1655, 2173, 2474 |
| BssMI | GATC | 7 cut(s) | 853, 1326, 1417, 2366, 2370, 2379, 2437 |
| BssSI | CACGAG | 2 cut(s) | 1235, 1758 |
| BssT1I | CCWWGG | 2 cut(s) | 1621, 1655 |
| Bst2BI | CACGAG | 2 cut(s) | 1235, 1758 |
| Bst2UI | CCWGG | 3 cut(s) | 2148, 2164, 2174 |
| Bst4CI | ACNGT | 6 cut(s) | 967, 1054, 1159, 1216, 1922, 2113 |
| Bst6I | CTCTTC | 2 cut(s) | 282, 1473 |
| BstAFI | CTTAAG | 1 cut(s) | 770 |
| BstAUI | TGTACA | 1 cut(s) | 1851 |
| BstC8I | GCNNGC | 4 cut(s) | 975, 1554, 1618, 2456 |
| BstF5I | GGATG | 9 cut(s) | 115, 199, 577, 655, 745, 961, 1384, 1669, 2104 |
| BstH2I | RGCGCY | 1 cut(s) | 2212 |
| BstHHI | GCGC | 4 cut(s) | 2024, 2211, 2301, 2486 |
| BstKTI | GATC | 7 cut(s) | 856, 1329, 1420, 2369, 2373, 2382, 2440 |
| BstMAI | GTCTC | 1 cut(s) | 1748 |
| BstMBI | GATC | 7 cut(s) | 853, 1326, 1417, 2366, 2370, 2379, 2437 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 353, 719, 1480, 1613, 1708, 1822, 2296 |
| BstNI | CCWGG | 3 cut(s) | 2148, 2164, 2174 |
| BstNSI | RCATGY | 3 cut(s) | 1449, 2266, 2424 |
| BstSCI | CCNGG | 5 cut(s) | 1219, 2146, 2162, 2172, 2473 |
| BstSFI | CTRYAG | 2 cut(s) | 591, 828 |
| BstSLI | GKGCMC | 1 cut(s) | 2395 |
| BstV1I | GCAGC | 9 cut(s) | 175, 178, 184, 187, 510, 1618, 1863, 1885, 2482 |
| BstV2I | GAAGAC | 2 cut(s) | 968, 2195 |
| BstX2I | RGATCY | 3 cut(s) | 853, 1326, 2379 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 509 |
| BstYI | RGATCY | 3 cut(s) | 853, 1326, 2379 |
| Bsu15I | ATCGAT | 1 cut(s) | 2369 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2387 |
| BsuI | GTATCC | 1 cut(s) | 1042 |
| BsuRI | GGCC | 4 cut(s) | 1620, 1896, 2324, 2393 |
| BsuTUI | ATCGAT | 1 cut(s) | 2369 |
| BtgZI | GCGATG | 1 cut(s) | 411 |
| BtsCI | GGATG | 9 cut(s) | 115, 199, 577, 655, 745, 961, 1384, 1669, 2104 |
| BtsIMutI | CAGTG | 4 cut(s) | 463, 828, 1059, 1212 |
| BveI | ACCTGC | 1 cut(s) | 713 |
| Cac8I | GCNNGC | 4 cut(s) | 975, 1554, 1618, 2456 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1169 |
| CciI | TCATGA | 1 cut(s) | 2489 |
| CfoI | GCGC | 4 cut(s) | 2024, 2211, 2301, 2486 |
| Cfr13I | GGNCC | 5 cut(s) | 1720, 1894, 2322, 2391, 2392 |
| ClaI | ATCGAT | 1 cut(s) | 2369 |
| CseI | GACGC | 1 cut(s) | 122 |
| Csp6I | GTAC | 6 cut(s) | 1664, 1686, 1852, 1983, 2109, 2129 |
| CviQI | GTAC | 6 cut(s) | 1664, 1686, 1852, 1983, 2109, 2129 |
| DpnI | GATC | 7 cut(s) | 855, 1328, 1419, 2368, 2372, 2381, 2439 |
| DpnII | GATC | 7 cut(s) | 853, 1326, 1417, 2366, 2370, 2379, 2437 |
| DraI | TTTAAA | 1 cut(s) | 1578 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2425 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2425 |
| Eam1104I | CTCTTC | 2 cut(s) | 282, 1473 |
| EarI | CTCTTC | 2 cut(s) | 282, 1473 |
| EciI | GGCGGA | 1 cut(s) | 1952 |
| Eco130I | CCWWGG | 2 cut(s) | 1621, 1655 |
| Eco24I | GRGCYC | 1 cut(s) | 2395 |
| Eco47I | GGWCC | 1 cut(s) | 1720 |
| Eco47III | AGCGCT | 1 cut(s) | 2210 |
| Eco57I | CTGAAG | 9 cut(s) | 54, 125, 138, 798, 870, 969, 1155, 1497, 1754 |
| Eco81I | CCTNAGG | 1 cut(s) | 2387 |
| Eco88I | CYCGRG | 1 cut(s) | 1674 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1720, 2322, 2391 |
| EcoRI | GAATTC | 1 cut(s) | 931 |
| EcoRII | CCWGG | 3 cut(s) | 2146, 2162, 2172 |
| EcoT14I | CCWWGG | 2 cut(s) | 1621, 1655 |
| EcoT38I | GRGCYC | 1 cut(s) | 2395 |
| ErhI | CCWWGG | 2 cut(s) | 1621, 1655 |
| FaqI | GGGAC | 3 cut(s) | 1581, 2095, 2190 |
| FbaI | TGATCA | 1 cut(s) | 1417 |
| FokI | GGATG | 9 cut(s) | 122, 206, 584, 662, 752, 968, 1391, 1656, 2111 |
| FriOI | GRGCYC | 1 cut(s) | 2395 |
| FspBI | CTAG | 3 cut(s) | 974, 1656, 2411 |
| FspI | TGCGCA | 1 cut(s) | 2300 |
| GlaI | GCGC | 4 cut(s) | 2023, 2210, 2300, 2485 |
| GsuI | CTGGAG | 1 cut(s) | 2214 |
| HaeII | RGCGCY | 1 cut(s) | 2212 |
| HaeIII | GGCC | 4 cut(s) | 1620, 1896, 2324, 2393 |
| HapII | CCGG | 2 cut(s) | 1220, 2474 |
| HgaI | GACGC | 1 cut(s) | 122 |
| HhaI | GCGC | 4 cut(s) | 2024, 2211, 2301, 2486 |
| Hin6I | GCGC | 4 cut(s) | 2022, 2209, 2299, 2484 |
| HinP1I | GCGC | 4 cut(s) | 2022, 2209, 2299, 2484 |
| HindIII | AAGCTT | 2 cut(s) | 1004, 1766 |
| HpaII | CCGG | 2 cut(s) | 1220, 2474 |
| HphI | GGTGA | 7 cut(s) | 23, 221, 341, 371, 694, 1307, 1448 |
| Hpy166II | GTNNAC | 3 cut(s) | 1456, 1531, 2058 |
| Hpy8I | GTNNAC | 3 cut(s) | 1456, 1531, 2058 |
| HpyAV | CCTTC | 7 cut(s) | 100, 361, 892, 1058, 1195, 1659, 2169 |
| HpyCH4III | ACNGT | 6 cut(s) | 967, 1054, 1159, 1216, 1922, 2113 |
| HpyCH4IV | ACGT | 2 cut(s) | 675, 1795 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 353, 719, 1480, 1613, 1708, 1822, 2296 |
| HpySE526I | ACGT | 2 cut(s) | 675, 1795 |
| HspAI | GCGC | 4 cut(s) | 2022, 2209, 2299, 2484 |
| Ksp22I | TGATCA | 1 cut(s) | 1417 |
| Kzo9I | GATC | 7 cut(s) | 853, 1326, 1417, 2366, 2370, 2379, 2437 |
| LguI | GCTCTTC | 1 cut(s) | 1473 |
| LmnI | GCTCC | 4 cut(s) | 174, 781, 970, 1382 |
| Lsp1109I | GCAGC | 9 cut(s) | 175, 178, 184, 187, 510, 1618, 1863, 1885, 2482 |
| LweI | GCATC | 9 cut(s) | 184, 751, 1066, 1078, 1156, 1240, 1678, 1961, 2056 |
| MaeI | CTAG | 3 cut(s) | 974, 1656, 2411 |
| MaeII | ACGT | 2 cut(s) | 675, 1795 |
| MaeIII | GTNAC | 6 cut(s) | 523, 871, 1159, 1309, 1406, 2427 |
| MalI | GATC | 7 cut(s) | 855, 1328, 1419, 2368, 2372, 2381, 2439 |
| MboI | GATC | 7 cut(s) | 853, 1326, 1417, 2366, 2370, 2379, 2437 |
| MfeI | CAATTG | 2 cut(s) | 294, 2343 |
| MflI | RGATCY | 3 cut(s) | 853, 1326, 2379 |
| MhlI | GDGCHC | 1 cut(s) | 2395 |
| MlyI | GAGTC | 8 cut(s) | 245, 274, 1199, 1750, 1754, 1813, 2185, 2350 |
| MmeI | TCCRAC | 4 cut(s) | 228, 388, 400, 2238 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1500, 1767 |
| MseI | TTAA | 7 cut(s) | 132, 560, 771, 1577, 1728, 2124, 2205 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1469, 1526 |
| MspA1I | CMGCKG | 3 cut(s) | 1279, 1616, 1876 |
| MspCI | CTTAAG | 1 cut(s) | 770 |
| MspI | CCGG | 2 cut(s) | 1220, 2474 |
| MspR9I | CCNGG | 5 cut(s) | 1221, 2148, 2164, 2174, 2475 |
| MunI | CAATTG | 2 cut(s) | 294, 2343 |
| Mva1269I | GAATGC | 1 cut(s) | 25 |
| MvaI | CCWGG | 3 cut(s) | 2148, 2164, 2174 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 353, 719, 1480, 1613, 1708, 1822, 2296 |
| NciI | CCSGG | 2 cut(s) | 1221, 2475 |
| NdeII | GATC | 7 cut(s) | 853, 1326, 1417, 2366, 2370, 2379, 2437 |
| NheI | GCTAGC | 1 cut(s) | 973 |
| NlaIV | GGNNCC | 9 cut(s) | 783, 1384, 1647, 1722, 1895, 1906, 2323, 2393, 2403 |
| NmuCI | GTSAC | 2 cut(s) | 1309, 2427 |
| NsbI | TGCGCA | 1 cut(s) | 2300 |
| NspI | RCATGY | 3 cut(s) | 1449, 2266, 2424 |
| OliI | CACNNNNGTG | 1 cut(s) | 1526 |
| PaeR7I | CTCGAG | 1 cut(s) | 1674 |
| PagI | TCATGA | 1 cut(s) | 2489 |
| PciI | ACATGT | 1 cut(s) | 2420 |
| PciSI | GCTCTTC | 1 cut(s) | 1473 |
| PctI | GAATGC | 1 cut(s) | 25 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1500, 1767 |
| PfeI | GAWTC | 8 cut(s) | 632, 749, 860, 949, 1079, 1372, 1518, 1546 |
| PleI | GAGTC | 8 cut(s) | 245, 273, 1199, 1750, 1753, 1813, 2185, 2350 |
| PpsI | GAGTC | 8 cut(s) | 245, 273, 1199, 1750, 1753, 1813, 2185, 2350 |
| PpuMI | RGGWCCY | 1 cut(s) | 1720 |
| PscI | ACATGT | 1 cut(s) | 2420 |
| Psp5II | RGGWCCY | 1 cut(s) | 1720 |
| Psp6I | CCWGG | 3 cut(s) | 2146, 2162, 2172 |
| PspGI | CCWGG | 3 cut(s) | 2146, 2162, 2172 |
| PspN4I | GGNNCC | 9 cut(s) | 783, 1384, 1647, 1722, 1895, 1906, 2323, 2393, 2403 |
| PspOMI | GGGCCC | 1 cut(s) | 2391 |
| PspPI | GGNCC | 5 cut(s) | 1720, 1894, 2322, 2391, 2392 |
| PspPPI | RGGWCCY | 1 cut(s) | 1720 |
| PspXI | VCTCGAGB | 1 cut(s) | 1674 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1169 |
| PsuI | RGATCY | 3 cut(s) | 853, 1326, 2379 |
| PvuII | CAGCTG | 3 cut(s) | 1279, 1616, 1876 |
| RsaI | GTAC | 6 cut(s) | 1665, 1687, 1853, 1984, 2110, 2130 |
| RsaNI | GTAC | 6 cut(s) | 1664, 1686, 1852, 1983, 2109, 2129 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1469, 1526 |
| SapI | GCTCTTC | 1 cut(s) | 1473 |
| SaqAI | TTAA | 7 cut(s) | 132, 560, 771, 1577, 1728, 2124, 2205 |
| Sau3AI | GATC | 7 cut(s) | 853, 1326, 1417, 2366, 2370, 2379, 2437 |
| Sau96I | GGNCC | 5 cut(s) | 1720, 1894, 2322, 2391, 2392 |
| SchI | GAGTC | 8 cut(s) | 245, 274, 1199, 1750, 1754, 1813, 2185, 2350 |
| ScrFI | CCNGG | 5 cut(s) | 1221, 2148, 2164, 2174, 2475 |
| SduI | GDGCHC | 1 cut(s) | 2395 |
| SfaNI | GCATC | 9 cut(s) | 184, 751, 1066, 1078, 1156, 1240, 1678, 1961, 2056 |
| SfcI | CTRYAG | 2 cut(s) | 591, 828 |
| Sfr274I | CTCGAG | 1 cut(s) | 1674 |
| SinI | GGWCC | 1 cut(s) | 1720 |
| SlaI | CTCGAG | 1 cut(s) | 1674 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1469, 1526 |
| SmlI | CTYRAG | 6 cut(s) | 599, 770, 867, 937, 1674, 1946 |
| SmoI | CTYRAG | 6 cut(s) | 599, 770, 867, 937, 1674, 1946 |
| SsiI | CCGC | 5 cut(s) | 647, 713, 1823, 1937, 2405 |
| SspMI | CTAG | 3 cut(s) | 974, 1656, 2411 |
| StyD4I | CCNGG | 5 cut(s) | 1219, 2146, 2162, 2172, 2473 |
| StyI | CCWWGG | 2 cut(s) | 1621, 1655 |
| TaaI | ACNGT | 6 cut(s) | 967, 1054, 1159, 1216, 1922, 2113 |
| TaiI | ACGT | 2 cut(s) | 678, 1798 |
| TaqI | TCGA | 3 cut(s) | 276, 1675, 2369 |
| TatI | WGTACW | 1 cut(s) | 1851 |
| TauI | GCSGC | 1 cut(s) | 2407 |
| TfiI | GAWTC | 8 cut(s) | 632, 749, 860, 949, 1079, 1372, 1518, 1546 |
| Tru1I | TTAA | 7 cut(s) | 132, 560, 771, 1577, 1728, 2124, 2205 |
| Tru9I | TTAA | 7 cut(s) | 132, 560, 771, 1577, 1728, 2124, 2205 |
| TscAI | CASTG | 4 cut(s) | 463, 828, 1059, 1219 |
| TseFI | GTSAC | 2 cut(s) | 1309, 2427 |
| TseI | GCWGC | 9 cut(s) | 163, 166, 197, 200, 498, 1631, 1873, 1876, 2470 |
| Tsp45I | GTSAC | 2 cut(s) | 1309, 2427 |
| TspDTI | ATGAA | 6 cut(s) | 623, 849, 1254, 1560, 1977, 2061 |
| TspRI | CASTG | 4 cut(s) | 463, 828, 1059, 1219 |
| Vha464I | CTTAAG | 1 cut(s) | 770 |
| VpaK11BI | GGWCC | 1 cut(s) | 1720 |
| XapI | RAATTY | 5 cut(s) | 157, 878, 931, 1579, 1787 |
| XceI | RCATGY | 3 cut(s) | 1449, 2266, 2424 |
| XhoI | CTCGAG | 1 cut(s) | 1674 |
| XmaJI | CCTAGG | 1 cut(s) | 1655 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1500, 1767 |
| XspI | CTAG | 3 cut(s) | 974, 1656, 2411 |