Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007786

Physical Location & Seq

Genomic Coordinates Reverse (-)

66325935 .. 66330465

Gene Structure 4531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00215770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGAAAATGGTGATGGGATTGTAGGTGGGTCTCAGACGGGTGAGAATAAGGCTGTGGTTGTTGTGGAGAGGGTTGTAGAGGATTCTAATGGAGTCAAGGATGATGTGGAGGAAGAGGTTTTTGAGGAGGCGATAGAGACCGGGACTGTTGGCGACAGTCCTCGTGCGGAGGATTTTGAAGAGGCGATTGAGGTTCTGGATGAGGCTGAGAAGAGCAAGGAGGAGGAGGAGGCTGTGGAGAACGGTGGGGAGGAAGTAGAAAAATCGGTGGGTGGGGATAGTGTTGATGGGTTTGTGGGGACTGGTAGTGTTGATGTGGAAGAGACTAGTGAGTCGAAGGGATTGGCAGATGAAGAGATGGTGGGTAGCCTAGAAGATGCGGTAAAAGATGTCTCGGAGGTTGGTGCTGATGGACAAGTAGCAGTTTCGACAGGTGGGGATGAGGCTGACCATGTGAAGTGTGAGAATCACGATTCTAAATCAAATGGATTGACGAATGATGGGTTGTTGGATGCAGCAAATGAGGCTTCAGGGATTGGTGCGGGTGGAGAAATGCCAATTTTGACTGATGTGGACGATGTTGATGGGAAGCCCGTTGAGGTTGCTGAGAATGAGAAGTATGAGAAGGACGACCAGGAGAACTTAGTTTTGGAAGTAGTGGCCACAGATGAAAAATTGGAGGATGAAGGTGCTAATCTTGATTCTGCTCCTGCAACTGAATTTAATATGGAAAATTTGAAGGAAGCTGGAAATGGTGAGGAAATAAAGGAGAATATCTTGAGTACAGAGAATCTGGATGATAGGACTGTGGATGTGGTAGATACTTCTGTTGGTGTTACTTTGAAGCTTGAAGATGATAAGGGTGTGGAATTGCAAGAGAGAAATATGGATCCAGAGCATACAGAATGTGAGAGTACTGACTCAAATAATGCTATATTTGTCACTGAAGCAAGGCAAGTGGATAATGAAGTTGAAGAAGTGAGAGCTACTATGACTTGTACAGATGCAGGAGATCAAGATTCAATGAAAGTGAAAAGTGTTTCTTCTGGGCTTGGTTTGGAGCATGATGTGGAAACATCTGAACTTAGAGGCATTTCATCTGAACAACAGTTGTCAGGGGTAGAAAGTCCTGTAGCATCTGAAATGGCAGGCTCAGCTGTTTCTAAAAGTTCTGCACCTGAGGACACAGAGAAGATTCAGGTTGGTAGCACTGTTTCGAGATCAGAGAATATCAAAGACGATGAACCTCAGCCAGCTGATGAGGTTGCTCATGTAGTCTGCAGCAATGGTGCTGCGCCTGAGGAGCCTGAAAAGAAAGAAAACAATCATGTAGAGAAGAGTAGCAACAGAATGAATAGAGTGCAGGAGGTCCAGCATGCACCAGCTCATGGTACGTCTGGAAATTCTACAAATCCAACCCCCTTCCCGCTCGTCCAGCTGGCCTTGGGCGAGCCGCCCCCTTTTGGAACATGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0019899 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

492

Amino Acids

52.08

Weight (kDa)

4.05

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16640 AT2G16640 AT2G16640 AT3G16620
fragaria_vesca	FvH4_2g01650 FvH4_2g01650
malus_domestica	MD05G1117800.v1.1 MD10G1120800.v1.1
prunus_persica	Prupe.8G162300_v2.0.a1 Prupe.8G162300_v2.0.a1
pyrus_communis	pycom05g11180 pycom10g10400
rosa_chinensis	RchiOBHm_Chr6g0244541
rosa_laevigata	RLG00000015350
rosa_multiflora	Rmu_co8516985.1_g000001 Rmu_sc0003679.1_g000009 Rmu_sc0017888.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215770
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024900 Rh6BG019800 Rh6CG017300 Rh6DG018300
rosa_wichuraiana	Rw6G002030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	331
AccB7I	CCANNNNNTGG	1 cut(s)	1388
AccBSI	CCGCTC	1 cut(s)	1429
AciI	CCGC	5 cut(s)	167, 380, 542, 1427, 1454
AclWI	GGATC	2 cut(s)	884, 897
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	3 cut(s)	719, 733, 1402
AcuI	CTGAAG	2 cut(s)	513, 966
AfaI	GTAC	4 cut(s)	784, 916, 1000, 1393
AfiI	CCNNNNNNNGG	2 cut(s)	1388, 1463
AgsI	TTSAA	6 cut(s)	179, 739, 844, 851, 974, 1023
AhlI	ACTAGT	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	633
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	7 cut(s)	746, 847, 986, 1157, 1256, 1385, 1438
AluI	AGCT	7 cut(s)	746, 847, 986, 1157, 1256, 1385, 1438
Alw26I	GTCTC	4 cut(s)	36, 131, 317, 397
AlwI	GGATC	2 cut(s)	884, 897
AoxI	GGCC	2 cut(s)	660, 1440
ApeKI	GCWGC	3 cut(s)	515, 1281, 1292
ApoI	RAATTY	3 cut(s)	719, 733, 1402
AspLEI	GCGC	1 cut(s)	1297
AspS9I	GGNCC	1 cut(s)	1369
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	3 cut(s)	23, 53, 767
AvaII	GGWCC	1 cut(s)	1369
AxyI	CCTNAGG	2 cut(s)	1179, 1299
BaeI	ACNNNNGTAYC	2 cut(s)	813, 846
BalI	TGGCCA	1 cut(s)	662
BamHI	GGATCC	1 cut(s)	889
BauI	CACGAG	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	1248
BbvI	GCAGC	3 cut(s)	527, 1279, 1293
BccI	CCATC	6 cut(s)	8, 281, 352, 404, 494, 578
BciT130I	CCWGG	1 cut(s)	635
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	4 cut(s)	36, 131, 317, 397
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	3 cut(s)	327, 371, 1477
BfmI	CTRYAG	2 cut(s)	1131, 1279
BisI	GCNGC	4 cut(s)	516, 1282, 1293, 1454
BlpI	GCTNAGC	1 cut(s)	1153
BlsI	GCNGC	4 cut(s)	517, 1283, 1294, 1455
BmcAI	AGTACT	1 cut(s)	916
Bme1390I	CCNGG	2 cut(s)	142, 635
Bme18I	GGWCC	1 cut(s)	1369
BmgT120I	GGNCC	1 cut(s)	1369
BmiI	GGNNCC	2 cut(s)	891, 1305
BmrFI	CCNGG	2 cut(s)	142, 635
BmsI	GCATC	4 cut(s)	367, 502, 994, 1145
Bpu10I	CCTNAGC	1 cut(s)	1248
Bpu1102I	GCTNAGC	1 cut(s)	1153
BpuEI	CTTGAG	1 cut(s)	799
BpuMI	CCSGG	1 cut(s)	142
BsaI	GGTCTC	2 cut(s)	36, 131
BsaJI	CCNNGG	1 cut(s)	1443
Bsc4I	CCNNNNNNNGG	2 cut(s)	1388, 1463
Bse1I	ACTGG	1 cut(s)	307
Bse21I	CCTNAGG	2 cut(s)	1179, 1299
Bse3DI	GCAATG	1 cut(s)	1291
BseBI	CCWGG	1 cut(s)	635
BseDI	CCNNGG	1 cut(s)	1443
BseGI	GGATG	7 cut(s)	106, 205, 445, 517, 688, 802, 817
BseLI	CCNNNNNNNGG	2 cut(s)	1388, 1463
BseMI	GCAATG	1 cut(s)	1291
BseMII	CTCAG	7 cut(s)	47, 198, 597, 1167, 1170, 1262, 1290
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	5 cut(s)	140, 236, 239, 242, 1316
BseXI	GCAGC	3 cut(s)	527, 1279, 1293
BsgI	GTGCAG	2 cut(s)	1158, 1382
BshFI	GGCC	2 cut(s)	662, 1442
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	157, 313
BslI	CCNNNNNNNGG	2 cut(s)	1388, 1463
BsmAI	GTCTC	4 cut(s)	36, 131, 317, 397
BsmFI	GGGAC	2 cut(s)	157, 313
BsnI	GGCC	2 cut(s)	662, 1442
Bso31I	GGTCTC	2 cut(s)	36, 131
Bsp1407I	TGTACA	1 cut(s)	998
Bsp143I	GATC	3 cut(s)	889, 1012, 1220
Bsp1720I	GCTNAGC	1 cut(s)	1153
BspACI	CCGC	5 cut(s)	167, 380, 542, 1427, 1454
BspANI	GGCC	2 cut(s)	662, 1442
BspCNI	CTCAG	7 cut(s)	46, 199, 598, 1166, 1171, 1261, 1291
BspLI	GGNNCC	2 cut(s)	891, 1305
BspMAI	CTGCAG	1 cut(s)	1283
BspPI	GGATC	2 cut(s)	884, 897
BspQI	GCTCTTC	1 cut(s)	206
BspTNI	GGTCTC	2 cut(s)	36, 131
BsrBI	CCGCTC	1 cut(s)	1429
BsrDI	GCAATG	1 cut(s)	1291
BsrGI	TGTACA	1 cut(s)	998
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	1443
BssMI	GATC	3 cut(s)	889, 1012, 1220
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	1443
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	6 cut(s)	148, 158, 245, 808, 1110, 1213
Bst6I	CTCTTC	6 cut(s)	108, 174, 206, 315, 348, 1331
BstAUI	TGTACA	1 cut(s)	998
BstC8I	GCNNGC	5 cut(s)	1150, 1254, 1377, 1440, 1451
BstDEI	CTNAG	9 cut(s)	33, 207, 606, 643, 1085, 1153, 1179, 1248, 1299
BstF5I	GGATG	7 cut(s)	106, 205, 445, 517, 688, 802, 817
BstHHI	GCGC	1 cut(s)	1297
BstKTI	GATC	3 cut(s)	892, 1015, 1223
BstMAI	GTCTC	4 cut(s)	36, 131, 317, 397
BstMBI	GATC	3 cut(s)	889, 1012, 1220
BstMWI	GCNNNNNNNGC	4 cut(s)	524, 1154, 1303, 1435
BstNI	CCWGG	1 cut(s)	635
BstNSI	RCATGY	2 cut(s)	1379, 1473
BstSCI	CCNGG	2 cut(s)	140, 633
BstSFI	CTRYAG	2 cut(s)	1131, 1279
BstV1I	GCAGC	3 cut(s)	527, 1279, 1293
BstX2I	RGATCY	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	889
Bsu36I	CCTNAGG	2 cut(s)	1179, 1299
BsuRI	GGCC	2 cut(s)	662, 1442
BtsCI	GGATG	7 cut(s)	106, 205, 445, 517, 688, 802, 817
BtsIMutI	CAGTG	2 cut(s)	942, 1209
Cac8I	GCNNGC	5 cut(s)	1150, 1254, 1377, 1440, 1451
CfoI	GCGC	1 cut(s)	1297
Cfr13I	GGNCC	1 cut(s)	1369
Csp6I	GTAC	4 cut(s)	783, 915, 999, 1392
CspCI	CAANNNNNGTGG	2 cut(s)	939, 974
CviAII	CATG	7 cut(s)	452, 1064, 1271, 1328, 1376, 1388, 1470
CviQI	GTAC	4 cut(s)	783, 915, 999, 1392
DdeI	CTNAG	9 cut(s)	33, 207, 606, 643, 1085, 1153, 1179, 1248, 1299
DpnI	GATC	3 cut(s)	891, 1014, 1222
DpnII	GATC	3 cut(s)	889, 1012, 1220
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	6 cut(s)	108, 174, 206, 315, 348, 1331
EarI	CTCTTC	6 cut(s)	108, 174, 206, 315, 348, 1331
Eco130I	CCWWGG	1 cut(s)	1443
Eco31I	GGTCTC	2 cut(s)	36, 131
Eco47I	GGWCC	1 cut(s)	1369
Eco57I	CTGAAG	2 cut(s)	513, 966
Eco81I	CCTNAGG	2 cut(s)	1179, 1299
EcoRII	CCWGG	1 cut(s)	633
EcoT14I	CCWWGG	1 cut(s)	1443
ErhI	CCWWGG	1 cut(s)	1443
FaeI	CATG	7 cut(s)	455, 1067, 1274, 1331, 1379, 1391, 1473
FalI	AAGNNNNNCTT	2 cut(s)	1027, 1059
FaqI	GGGAC	2 cut(s)	157, 313
FatI	CATG	7 cut(s)	451, 1063, 1270, 1327, 1375, 1387, 1469
FauI	CCCGC	2 cut(s)	535, 1434
Fnu4HI	GCNGC	4 cut(s)	516, 1282, 1293, 1454
FokI	GGATG	7 cut(s)	113, 212, 452, 524, 695, 809, 824
Fsp4HI	GCNGC	4 cut(s)	516, 1282, 1293, 1454
FspBI	CTAG	3 cut(s)	327, 371, 1477
GlaI	GCGC	1 cut(s)	1296
GluI	GCNGC	4 cut(s)	516, 1282, 1293, 1454
HaeIII	GGCC	2 cut(s)	662, 1442
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	1297
Hin1II	CATG	7 cut(s)	455, 1067, 1274, 1331, 1379, 1391, 1473
Hin6I	GCGC	1 cut(s)	1295
HinP1I	GCGC	1 cut(s)	1295
HindIII	AAGCTT	1 cut(s)	845
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	3 cut(s)	23, 53, 767
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	6 cut(s)	36, 397, 1081, 1102, 1141, 1225
Hpy188III	TCNNGA	9 cut(s)	197, 470, 698, 778, 794, 893, 1016, 1218, 1398
Hpy8I	GTNNAC	1 cut(s)	574
HpyAV	CCTTC	5 cut(s)	331, 619, 680, 733, 1432
HpyCH4III	ACNGT	6 cut(s)	148, 158, 245, 808, 1110, 1213
HpyCH4IV	ACGT	1 cut(s)	1394
HpyCH4V	TGCA	9 cut(s)	515, 713, 874, 1007, 1175, 1281, 1363, 1379, 1473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	524, 1154, 1303, 1435
HpyF3I	CTNAG	9 cut(s)	33, 207, 606, 643, 1085, 1153, 1179, 1248, 1299
HpySE526I	ACGT	1 cut(s)	1394
Hsp92II	CATG	7 cut(s)	455, 1067, 1274, 1331, 1379, 1391, 1473
HspAI	GCGC	1 cut(s)	1295
Kzo9I	GATC	3 cut(s)	889, 1012, 1220
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	3 cut(s)	712, 1060, 1303
Lsp1109I	GCAGC	3 cut(s)	527, 1279, 1293
LweI	GCATC	4 cut(s)	367, 502, 994, 1145
MaeI	CTAG	3 cut(s)	327, 371, 1477
MaeII	ACGT	1 cut(s)	1394
MaeIII	GTNAC	2 cut(s)	835, 940
MalI	GATC	3 cut(s)	891, 1014, 1222
MbiI	CCGCTC	1 cut(s)	1429
MboI	GATC	3 cut(s)	889, 1012, 1220
MflI	RGATCY	1 cut(s)	889
MlsI	TGGCCA	1 cut(s)	662
MluCI	AATT	6 cut(s)	558, 674, 719, 733, 869, 1402
MluNI	TGGCCA	1 cut(s)	662
MlyI	GAGTC	3 cut(s)	102, 341, 914
MmeI	TCCRAC	2 cut(s)	489, 1439
Mox20I	TGGCCA	1 cut(s)	662
MscI	TGGCCA	1 cut(s)	662
MseI	TTAA	1 cut(s)	723
Msp20I	TGGCCA	1 cut(s)	662
MspA1I	CMGCKG	3 cut(s)	1157, 1256, 1438
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	142, 635
MvaI	CCWGG	1 cut(s)	635
MwoI	GCNNNNNNNGC	4 cut(s)	524, 1154, 1303, 1435
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	3 cut(s)	889, 1012, 1220
NlaIII	CATG	7 cut(s)	455, 1067, 1274, 1331, 1379, 1391, 1473
NlaIV	GGNNCC	2 cut(s)	891, 1305
NmuCI	GTSAC	1 cut(s)	940
NspI	RCATGY	2 cut(s)	1379, 1473
PaeI	GCATGC	1 cut(s)	1379
PciSI	GCTCTTC	1 cut(s)	206
PfeI	GAWTC	7 cut(s)	83, 466, 473, 701, 790, 1019, 1195
PflMI	CCANNNNNTGG	1 cut(s)	1388
PkrI	GCNGC	4 cut(s)	517, 1283, 1294, 1455
PleI	GAGTC	3 cut(s)	101, 340, 914
PpsI	GAGTC	3 cut(s)	101, 340, 914
Psp6I	CCWGG	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	2 cut(s)	891, 1305
PspPI	GGNCC	1 cut(s)	1369
PstI	CTGCAG	1 cut(s)	1283
PsuI	RGATCY	1 cut(s)	889
PvuII	CAGCTG	3 cut(s)	1157, 1256, 1438
RsaI	GTAC	4 cut(s)	784, 916, 1000, 1393
RsaNI	GTAC	4 cut(s)	783, 915, 999, 1392
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	4 cut(s)	516, 1282, 1293, 1454
Sau3AI	GATC	3 cut(s)	889, 1012, 1220
Sau96I	GGNCC	1 cut(s)	1369
ScaI	AGTACT	1 cut(s)	916
SchI	GAGTC	3 cut(s)	102, 341, 914
ScrFI	CCNGG	2 cut(s)	142, 635
SfaNI	GCATC	4 cut(s)	367, 502, 994, 1145
SfcI	CTRYAG	2 cut(s)	1131, 1279
SinI	GGWCC	1 cut(s)	1369
SmlI	CTYRAG	1 cut(s)	778
SmoI	CTYRAG	1 cut(s)	778
SpeI	ACTAGT	1 cut(s)	326
SphI	GCATGC	1 cut(s)	1379
Sse9I	AATT	6 cut(s)	558, 674, 719, 733, 869, 1402
SsiI	CCGC	5 cut(s)	167, 380, 542, 1427, 1454
SspMI	CTAG	3 cut(s)	327, 371, 1477
StyD4I	CCNGG	2 cut(s)	140, 633
StyI	CCWWGG	1 cut(s)	1443
TaaI	ACNGT	6 cut(s)	148, 158, 245, 808, 1110, 1213
TaiI	ACGT	1 cut(s)	1397
TaqI	TCGA	3 cut(s)	335, 428, 1217
TasI	AATT	6 cut(s)	558, 674, 719, 733, 869, 1402
TatI	WGTACW	3 cut(s)	782, 914, 998
TauI	GCSGC	1 cut(s)	1456
TfiI	GAWTC	7 cut(s)	83, 466, 473, 701, 790, 1019, 1195
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	2 cut(s)	949, 1216
TseFI	GTSAC	1 cut(s)	940
TseI	GCWGC	3 cut(s)	515, 1281, 1292
Tsp45I	GTSAC	1 cut(s)	940
TspDTI	ATGAA	8 cut(s)	366, 684, 699, 981, 1040, 1086, 1257, 1367
TspRI	CASTG	2 cut(s)	949, 1216
Van91I	CCANNNNNTGG	1 cut(s)	1388
VpaK11BI	GGWCC	1 cut(s)	1369
XapI	RAATTY	3 cut(s)	719, 733, 1402
XceI	RCATGY	2 cut(s)	1379, 1473
XspI	CTAG	3 cut(s)	327, 371, 1477
ZrmI	AGTACT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.