Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007786

Physical Location & Seq

Genomic Coordinates Forward (+)

1688668 .. 1692372

Gene Structure 3705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG018300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3705 bp

ATGGAAAATGGTGATGGGATTTTAGGTGGGTCTCAGACGGTGGGTGAGAATAAGGCTGAGGTTGTTGAGGAGAGGGTTGTAGAGGAATCTAATGGAGTCAGGGATGATGTGGAGGAAGAGGTTTTCGAGGAGGCGATAGAGACCGGGGCTGTTGGTGACAGTCCTCGTGCGGAGGATTTTGAAGAGGCGTGCGAGGTTTTGGATGAGGCTGGGAAGAGCAAGGAGGAGGAGACTGTGGAGAACGGTGGGGAGGAAGTAGAAAAAATGGCGGGTGGGGATAGTGTTGATGGGTTTGCGGGGACTGGTAGTGTTGATGTGGAAGAGACTGTGAAGGAATCGGAGACTAGTGAGTCGAAGGGATTGGCAGATGAAGAGATGGTGGGTAGCCTAGAAGATGCGGTAAAAGATGTCTCGGAGGTTGGTGCTGCTGGACAAGTAGCAGTTTCGACAGGTGGGGATGAGGTTGATCATGTGAAGTGTGAGAATCACGATTCTAAGTCAAATGGATTGACGAATGATGGGTTGTTGGATGCAGCAAATGAGGTTTCAGGGATTGGTGCGGGTGGAGAAATACCAGTTTTGACTGATGTGGACGAGGTTGATGGGAAGCCCGTTGAGGTTGCTGAGAATGAGAAGTCTGAGAAGGACGACCAGGATAACTTAGTTTTGGAAGTAGTGCCCAAAGATGAAAAATTGCATAATGAAGTTGCTAATCTTGATTCTGCTCCAGTAACTGAATTTAATATGGAAAATTTGAAGGAAGCTGGAAATGGTGGGGAAATAAAGGAGAATATCTTGGGTACAGAGAATCTGGATGATAAGACTGTGGATGTGGTAGATACTTCTGTTGGTGTTACTTTGAAGCTTGAAGATGATAAGGGTGTGGAATTGCAAGAGAGAAATATGGATCCAGTGCATACAGAATGTGAGAGTACTGACTCAAAAGATGCTATATTTGTCACTGAAGCAAGGCAACTGGATAATAAAGTTGAAGAACTGAGAGCTACTATGACTTGTACAGATGCAGGAGATCAAGATTCAATGAAAGTGAAAAGTGTTTCTTCTGGGCTTGGTTTGGAGCAGGATGTGGAAACATCTGAACTAGGCATTTCATCTGAACAACAGTTGGCAGGGGTAGAAAGTCCTGTAGCATCTGAAATGGCAGGCTCAGCTGTTTCTAAAAGTTCTGCAACTGAGGACACAGAGAAGATTCAGGTTGGTAGCACTGTTTCGAGATCAGAGAATATCAAAGATGATGAACCTCAGCCAGCTGATGAGGTTGCTCATGTAGTTTGCAACAATGGTGCTGCGCCTGAGGAGCCTGAAAAGAAAGAAAACAATCATGTAGAGAAGAGTAGCAACAGAATGAATAGAGTGCAGGAGGTCCAGCATGCGCCAGCTCATGGTTCCTCTGGAAATTCTACAAATCCCACTCCCCTTCCTGCTCGTCCTGCTGGCCTTGGGCGTGCTGCTGCCCCTCTTTTGGAACATGCACCTAGGGCGGTACAGCAGCCTCGGGTAAATGGTACCGTATCTCATGTGCAAAACCAGCAAATTGAGGATCCCGTTAATGGAGAGGCAGAGGAGTCGGATGAGACTCGTGAAAAGCTTCAGATGATCAGAGTAAAATTTTTGCGGCTTTCGCATAGGCTTGGGCAGACTCCACATAATGTTGTTGTGGCTCAGGTTTTGTACAGACTGGGGTTAGCTGAGCAGCTGCATGGGAGAAGTGGGGGTCGTGTTGGTGCCTTTAGTTTTGACCGTGCAAGTGCTATGGCGGAGCAGCTAGAGGCATCTGGGAATGAACCCCTTGATTTCTCTTGTACAATTATGGTTCTTGGAAAGTCAGGAGTTGGTAAAAGTGCCACCATCAATTCTATATTTGATGAAGTGAAGTTCAATACTGATGCTTTTCAGATGGGGACAAAGAAGGTTCAGGATGTCGTGGGTACTGTGCAGGGAATTAAGGTAAGAGTCATCGACACACCTGGGCTTCTACCTTCCTGGTCGGACCAGCGTCAGAATGAGAAGATTCTGCTCGCTGCTAAGCGCTTTATCAAGAAAACACCTCCAGATATTGTTTTGTATCTTGATAGGTTGGACATGCAGAGCAGGGATTTCAGTGACATGCCACTCTTGCGCACAATCACAGAGATTTTTGGGGCGACTATATGGTTCAATGCAATTGTGGTTCTGACTCATGCTGCGTCAGCTCCGCCCGAGGGCCCAAATGGCGCTGCTTCTAGTTATGACATGTTTGTTACTCAAAGATCTCATGTTGTCCAGCAAGCCATTCGTCAGGCGGCTGGGGATATGCGCCTTATGAATCCTGTTTCCTTAGTAGAGAACCACTCTGCTTGCAGGACCAATCGTGCTGGCCAGAGAGTCTTGCCAAATGGTCAGGTTTGGAAGCCTCATTTGTTATTGCTCTCTTTTGCATCCAAGATCCTTGCTGAAGCTAATGCACTATTGAAGTTGCAAGACAGTCCTCCTGGAAGACCTTTTGCACCTCGATCTAGGCCACCTCCATTACCTTTCCTTCTTTCCTCCCTCCTTCAGTCAAAACCGCAGTTGAAGCTGCCTGAGGATCAATTTGGTGATGATGATGATGGCGTAGATGATGATCTGGATGAGTCTTCAGATTCTGAAGATGAATCAGAATTTGATGAATTACCACCATTCAAACGTTTGACTAAGGCCCAGGTGGAGAAACTCTCTAAAGCTCAGAAAAAGGCATATTTCGATGAGTTGGAGTATAGAGAAAAGCTTTTTATGAAGAAACAGTTGAAGGAGGAGAAAAAGCGACGAAAGTTGATGAAAAAAATGGCAGCTGCAGCAAAGGATCTGCCAAGTGATTATGGTGAAACTGTAGAGGAAGAAAGTGCAAGTGCAGCATCTGTACCCGTTCCCATGCCAGATTTGCCTTTGCCTGCTTCCTTTGATTCTGATAATCCCACTCATCGTTATCGATATCTAGATTCTTCCAACCAGTGGCTTGTAAGACCTGTTCTAGAAACTCATGGTTGGGATCATGACGTTGGTTATGAGGGCATAAATGCAGAAAGATTGTTCGTCTTAAATGGCAAGATACCCTTATCATTTTCTGGCCAGGTCACCAAAGATAAGAAGGATGCCAATGTCCAAATGGAACTAGCTAGTTCAGTAAAGCATGGGGAAGGGAAGGCAAGTTCGGTAGGACTTGAAATGCAGACTGTTGGAAAGGACTTGGCTTATACTCTACGAGGCGACACTAGGTTCAGTAATTTTAGGACGAATAAAGCAAGTGCTGGTGTCTCGGTCACCCTCTTGGGTGATGCTCTATCGGCTGGGTTGAAAATTGAAGACAAATTTATTCCTCATAAACGGTTCCGATTGGTTATGACGGGTGGTGCAATGACTGCTCGTGGGGACATTGCTTATGGTGGTAGTTTGGAGGCTCAGTTAAGAGACAAAGATCATCCGCTGGGTCGTTCACTATCAACTTTTGGGCTCTCTGTGATGGATTGGCATGGAGATCTTGCTATTGGAGGTAATGTACAGACTCAGATTCCAGTTGGTCGACATACAAACCTTATAGGTCGTGCCAATTTAAATAATAGGGGAGCAGGACAACTGAGCATCCGCTTAAATAGTTCAGAACAGCTTCAAATAGCTTTGATTGGTCTCATTCCGCTGCTTAGAAAGTTGTTCACTTACCCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0019899 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

1234

Amino Acids

133.79

Weight (kDa)

4.74

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIG1	PF04548	608 - 766	5.7e-25	AIG1 family
MMR_HSR1	PF01926	610 - 697	1.4e-09	50S ribosome-binding GTPase
TOC159_MAD	PF11886	967 - 1231	1.1e-122	Translocase of chloroplast 159/132, membrane anchor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16640 AT2G16640 AT2G16640 AT3G16620
fragaria_vesca	FvH4_2g01650 FvH4_2g01650
malus_domestica	MD05G1117800.v1.1 MD10G1120800.v1.1
prunus_persica	Prupe.8G162300_v2.0.a1 Prupe.8G162300_v2.0.a1
pyrus_communis	pycom05g11180 pycom10g10400
rosa_chinensis	RchiOBHm_Chr6g0244541
rosa_laevigata	RLG00000015350
rosa_multiflora	Rmu_co8516985.1_g000001 Rmu_sc0003679.1_g000009 Rmu_sc0017888.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215770
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024900 Rh6BG019800 Rh6CG017300 Rh6DG018300
rosa_wichuraiana	Rw6G002030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
Acc16I	TGCGCA	1 cut(s)	2141
Acc65I	GGTACC	1 cut(s)	1526
AccB1I	GGYRCC	2 cut(s)	1526, 1745
AccB7I	CCANNNNNTGG	2 cut(s)	1403, 2991
AccI	GTMKAC	1 cut(s)	3559
AclI	AACGTT	1 cut(s)	2686
AclWI	GGATC	8 cut(s)	902, 915, 1556, 1569, 2440, 2595, 2850, 3036
AcoI	YGGCCR	2 cut(s)	2377, 3106
AcsI	RAATTY	6 cut(s)	737, 751, 1417, 1628, 2660, 3347
AcuI	CTGAAG	6 cut(s)	984, 1595, 2475, 2540, 2622, 2667
AfeI	AGCGCT	1 cut(s)	2051
AfiI	CCNNNNNNNGG	5 cut(s)	1403, 1483, 1571, 2222, 2991
AflIII	ACRYGT	1 cut(s)	2253
AhlI	ACTAGT	1 cut(s)	344
AjnI	CCWGG	6 cut(s)	651, 1987, 2003, 2491, 2700, 3108
AloI	GAACNNNNNNTCC	2 cut(s)	3172, 3204
AlwI	GGATC	8 cut(s)	902, 915, 1556, 1569, 2440, 2595, 2850, 3036
AlwNI	CAGNNNCTG	3 cut(s)	734, 2645, 2897
Ama87I	CYCGRG	2 cut(s)	1515, 2219
Aor51HI	AGCGCT	1 cut(s)	2051
AoxI	GGCC	6 cut(s)	1456, 2224, 2377, 2519, 2697, 3106
ApaI	GGGCCC	1 cut(s)	2228
ApoI	RAATTY	6 cut(s)	737, 751, 1417, 1628, 2660, 3347
Asp700I	GAANNNNTTC	2 cut(s)	1608, 3642
Asp718I	GGTACC	1 cut(s)	1526
AspA2I	CCTAGG	1 cut(s)	1496
AspLEI	GCGC	6 cut(s)	1312, 1396, 2052, 2142, 2237, 2319
AspS9I	GGNCC	6 cut(s)	1384, 2011, 2224, 2225, 2364, 2698
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	8 cut(s)	23, 56, 167, 2609, 2873, 3106, 3292, 3323
AvaI	CYCGRG	2 cut(s)	1515, 2219
AvaII	GGWCC	3 cut(s)	1384, 2011, 2364
AvrII	CCTAGG	1 cut(s)	1496
AxyI	CCTNAGG	2 cut(s)	1314, 2583
BaeGI	GKGCMC	2 cut(s)	681, 2228
BaeI	ACNNNNGTAYC	2 cut(s)	831, 864
BalI	TGGCCA	2 cut(s)	2379, 3108
BamHI	GGATCC	2 cut(s)	907, 1561
BanI	GGYRCC	2 cut(s)	1526, 1745
BanII	GRGCYC	2 cut(s)	2228, 3492
BauI	CACGAG	3 cut(s)	165, 1599, 3402
BbsI	GAAGAC	3 cut(s)	2503, 2628, 3348
BbvCI	CCTCAGC	2 cut(s)	57, 1263
BccI	CCATC	9 cut(s)	8, 281, 370, 512, 596, 1877, 1912, 2603, 3493
BcgI	CGANNNNNNTGC	4 cut(s)	1569, 1603, 2276, 2310
BciT130I	CCWGG	6 cut(s)	653, 1989, 2005, 2493, 2702, 3110
BclI	TGATCA	2 cut(s)	466, 1617
BcnI	CCSGG	1 cut(s)	145
BcuI	ACTAGT	1 cut(s)	344
BfmI	CTRYAG	3 cut(s)	1146, 2832, 2868
BfoI	RGCGCY	2 cut(s)	2053, 2238
BglI	GCCNNNNNGGC	1 cut(s)	2232
BglII	AGATCT	2 cut(s)	2270, 3514
BlnI	CCTAGG	1 cut(s)	1496
BlpI	GCTNAGC	3 cut(s)	1168, 1710, 2046
BmcAI	AGTACT	1 cut(s)	934
Bme1390I	CCNGG	7 cut(s)	145, 653, 1989, 2005, 2493, 2702, 3110
Bme18I	GGWCC	3 cut(s)	1384, 2011, 2364
BmeT110I	CYCGRG	2 cut(s)	1515, 2219
BmgT120I	GGNCC	6 cut(s)	1384, 2011, 2224, 2225, 2364, 2698
BmiI	GGNNCC	8 cut(s)	909, 1320, 1408, 1528, 1563, 1747, 2226, 3368
BmrFI	CCNGG	7 cut(s)	145, 653, 1989, 2005, 2493, 2702, 3110
BmrI	ACTGGG	1 cut(s)	1709
BmuI	ACTGGG	1 cut(s)	1709
BoxI	GACNNNNGTC	1 cut(s)	2016
BpiI	GAAGAC	3 cut(s)	2503, 2628, 3348
BplI	GAGNNNNNCTC	4 cut(s)	2336, 2368, 2699, 2731
BpmI	CTGGAG	2 cut(s)	711, 2055
Bpu10I	CCTNAGC	3 cut(s)	57, 1263, 1683
Bpu1102I	GCTNAGC	3 cut(s)	1168, 1710, 2046
BpuMI	CCSGG	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	2968
BsaBI	GATNNNNATC	1 cut(s)	2622
BsaI	GGTCTC	3 cut(s)	36, 134, 3668
BsaJI	CCNNGG	7 cut(s)	144, 1459, 1496, 1514, 1988, 2220, 2700
BsaXI	ACNNNNNCTCC	4 cut(s)	3425, 3455, 3519, 3549
Bsc4I	CCNNNNNNNGG	5 cut(s)	1403, 1483, 1571, 2222, 2991
Bse1I	ACTGG	8 cut(s)	307, 575, 728, 911, 981, 1704, 2989, 3551
Bse21I	CCTNAGG	2 cut(s)	1314, 2583
Bse3DI	GCAATG	2 cut(s)	3399, 3411
Bse8I	GATNNNNATC	1 cut(s)	2622
BseBI	CCWGG	6 cut(s)	653, 1989, 2005, 2493, 2702, 3110
BseCI	ATCGAT	1 cut(s)	2968
BseDI	CCNNGG	7 cut(s)	144, 1459, 1496, 1514, 1988, 2220, 2700
BseJI	GATNNNNATC	1 cut(s)	2622
BseLI	CCNNNNNNNGG	5 cut(s)	1403, 1483, 1571, 2222, 2991
BseMI	GCAATG	2 cut(s)	3399, 3411
BseNI	ACTGG	8 cut(s)	307, 575, 728, 911, 981, 1704, 2989, 3551
BseRI	GAGGAG	7 cut(s)	83, 143, 239, 242, 1331, 1598, 2807
BseSI	GKGCMC	2 cut(s)	681, 2228
BseYI	CCCAGC	4 cut(s)	209, 2306, 3326, 3463
BsgI	GTGCAG	3 cut(s)	1397, 1976, 2910
BshFI	GGCC	6 cut(s)	1458, 2226, 2379, 2521, 2699, 3108
BshNI	GGYRCC	2 cut(s)	1526, 1745
BshVI	ATCGAT	1 cut(s)	2968
BsiHKCI	CYCGRG	2 cut(s)	1515, 2219
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	3 cut(s)	313, 1936, 3422
BslI	CCNNNNNNNGG	5 cut(s)	1403, 1483, 1571, 2222, 2991
BsmFI	GGGAC	3 cut(s)	313, 1936, 3422
BsnI	GGCC	6 cut(s)	1458, 2226, 2379, 2521, 2699, 3108
Bso31I	GGTCTC	3 cut(s)	36, 134, 3668
BsoBI	CYCGRG	2 cut(s)	1515, 2219
Bsp120I	GGGCCC	1 cut(s)	2224
Bsp1286I	GDGCHC	3 cut(s)	681, 2228, 3492
Bsp1407I	TGTACA	4 cut(s)	1016, 1692, 1823, 3535
Bsp1720I	GCTNAGC	3 cut(s)	1168, 1710, 2046
BspANI	GGCC	6 cut(s)	1458, 2226, 2379, 2521, 2699, 3108
BspDI	ATCGAT	1 cut(s)	2968
BspHI	TCATGA	1 cut(s)	3031
BspLI	GGNNCC	8 cut(s)	909, 1320, 1408, 1528, 1563, 1747, 2226, 3368
BspMAI	CTGCAG	1 cut(s)	2836
BspPI	GGATC	8 cut(s)	902, 915, 1556, 1569, 2440, 2595, 2850, 3036
BspQI	GCTCTTC	1 cut(s)	209
BspT107I	GGYRCC	2 cut(s)	1526, 1745
BspTNI	GGTCTC	3 cut(s)	36, 134, 3668
BsrDI	GCAATG	2 cut(s)	3399, 3411
BsrGI	TGTACA	4 cut(s)	1016, 1692, 1823, 3535
BsrI	ACTGG	8 cut(s)	307, 575, 728, 911, 981, 1704, 2989, 3551
BssECI	CCNNGG	7 cut(s)	144, 1459, 1496, 1514, 1988, 2220, 2700
BssSI	CACGAG	3 cut(s)	165, 1599, 3402
BssT1I	CCWWGG	2 cut(s)	1459, 1496
Bst2BI	CACGAG	3 cut(s)	165, 1599, 3402
Bst2UI	CCWGG	6 cut(s)	653, 1989, 2005, 2493, 2702, 3110
Bst6I	CTCTTC	6 cut(s)	111, 177, 209, 315, 366, 1346
BstAPI	GCANNNNNTGC	1 cut(s)	3398
BstAUI	TGTACA	4 cut(s)	1016, 1692, 1823, 3535
BstEII	GGTNACC	2 cut(s)	3112, 3298
BstH2I	RGCGCY	2 cut(s)	2053, 2238
BstHHI	GCGC	6 cut(s)	1312, 1396, 2052, 2142, 2237, 2319
BstNI	CCWGG	6 cut(s)	653, 1989, 2005, 2493, 2702, 3110
BstNSI	RCATGY	5 cut(s)	1394, 1493, 2107, 2131, 2257
BstPAI	GACNNNNGTC	1 cut(s)	2016
BstPI	GGTNACC	2 cut(s)	3112, 3298
BstSCI	CCNGG	7 cut(s)	143, 651, 1987, 2003, 2491, 2700, 3108
BstSFI	CTRYAG	3 cut(s)	1146, 2832, 2868
BstSLI	GKGCMC	2 cut(s)	681, 2228
BstV2I	GAAGAC	3 cut(s)	2503, 2628, 3348
BstX2I	RGATCY	6 cut(s)	907, 1561, 2270, 2445, 2842, 3514
BstYI	RGATCY	6 cut(s)	907, 1561, 2270, 2445, 2842, 3514
Bsu15I	ATCGAT	1 cut(s)	2968
Bsu36I	CCTNAGG	2 cut(s)	1314, 2583
BsuRI	GGCC	6 cut(s)	1458, 2226, 2379, 2521, 2699, 3108
BsuTUI	ATCGAT	1 cut(s)	2968
BtsIMutI	CAGTG	5 cut(s)	918, 960, 1224, 2128, 2996
CaiI	CAGNNNCTG	3 cut(s)	734, 2645, 2897
CciI	TCATGA	1 cut(s)	3031
CfoI	GCGC	6 cut(s)	1312, 1396, 2052, 2142, 2237, 2319
Cfr13I	GGNCC	6 cut(s)	1384, 2011, 2224, 2225, 2364, 2698
ClaI	ATCGAT	1 cut(s)	2968
CseI	GACGC	2 cut(s)	2006, 2196
CspCI	CAANNNNNGTGG	2 cut(s)	2339, 2374
DraI	TTTAAA	1 cut(s)	3591
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	2 cut(s)	2377, 3106
Eam1104I	CTCTTC	6 cut(s)	111, 177, 209, 315, 366, 1346
EarI	CTCTTC	6 cut(s)	111, 177, 209, 315, 366, 1346
EciI	GGCGGA	2 cut(s)	1793, 2205
Eco130I	CCWWGG	2 cut(s)	1459, 1496
Eco24I	GRGCYC	2 cut(s)	2228, 3492
Eco31I	GGTCTC	3 cut(s)	36, 134, 3668
Eco32I	GATATC	1 cut(s)	2972
Eco47I	GGWCC	3 cut(s)	1384, 2011, 2364
Eco47III	AGCGCT	1 cut(s)	2051
Eco57I	CTGAAG	6 cut(s)	984, 1595, 2475, 2540, 2622, 2667
Eco81I	CCTNAGG	2 cut(s)	1314, 2583
Eco88I	CYCGRG	2 cut(s)	1515, 2219
Eco91I	GGTNACC	2 cut(s)	3112, 3298
EcoO109I	RGGNCCY	1 cut(s)	2224
EcoO65I	GGTNACC	2 cut(s)	3112, 3298
EcoRII	CCWGG	6 cut(s)	651, 1987, 2003, 2491, 2700, 3108
EcoRV	GATATC	1 cut(s)	2972
EcoT14I	CCWWGG	2 cut(s)	1459, 1496
EcoT38I	GRGCYC	2 cut(s)	2228, 3492
ErhI	CCWWGG	2 cut(s)	1459, 1496
FalI	AAGNNNNNCTT	4 cut(s)	1045, 1077, 3077, 3109
FaqI	GGGAC	3 cut(s)	313, 1936, 3422
FauI	CCCGC	3 cut(s)	262, 289, 553
FbaI	TGATCA	2 cut(s)	466, 1617
FblI	GTMKAC	1 cut(s)	3559
FriOI	GRGCYC	2 cut(s)	2228, 3492
FspI	TGCGCA	1 cut(s)	2141
GlaI	GCGC	6 cut(s)	1311, 1395, 2051, 2141, 2236, 2318
GsaI	CCCAGC	4 cut(s)	213, 2310, 3330, 3467
GsuI	CTGGAG	2 cut(s)	711, 2055
HaeII	RGCGCY	2 cut(s)	2053, 2238
HaeIII	GGCC	6 cut(s)	1458, 2226, 2379, 2521, 2699, 3108
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	2 cut(s)	2006, 2196
HhaI	GCGC	6 cut(s)	1312, 1396, 2052, 2142, 2237, 2319
Hin6I	GCGC	6 cut(s)	1310, 1394, 2050, 2140, 2235, 2317
HinP1I	GCGC	6 cut(s)	1310, 1394, 2050, 2140, 2235, 2317
HincII	GTYRAC	1 cut(s)	3560
HindII	GTYRAC	1 cut(s)	3560
HindIII	AAGCTT	3 cut(s)	863, 1607, 2765
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	8 cut(s)	23, 56, 167, 2609, 2873, 3106, 3292, 3323
Hpy166II	GTNNAC	4 cut(s)	592, 3473, 3560, 3690
Hpy8I	GTNNAC	4 cut(s)	592, 3473, 3560, 3690
Hpy99I	CGWCG	1 cut(s)	2808
HpyCH4IV	ACGT	2 cut(s)	2686, 3036
HpySE526I	ACGT	2 cut(s)	2686, 3036
HspAI	GCGC	6 cut(s)	1310, 1394, 2050, 2140, 2235, 2317
KpnI	GGTACC	1 cut(s)	1530
Ksp22I	TGATCA	2 cut(s)	466, 1617
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	6 cut(s)	730, 1078, 1318, 1780, 2218, 3602
MaeII	ACGT	2 cut(s)	2686, 3036
MaeIII	GTNAC	8 cut(s)	155, 730, 853, 958, 2123, 2260, 3112, 3298
MfeI	CAATTG	1 cut(s)	2184
MflI	RGATCY	6 cut(s)	907, 1561, 2270, 2445, 2842, 3514
MhlI	GDGCHC	3 cut(s)	681, 2228, 3492
MlsI	TGGCCA	2 cut(s)	2379, 3108
MluNI	TGGCCA	2 cut(s)	2379, 3108
MmeI	TCCRAC	7 cut(s)	507, 1569, 1989, 2079, 2730, 3009, 3196
Mox20I	TGGCCA	2 cut(s)	2379, 3108
MroXI	GAANNNNTTC	2 cut(s)	1608, 3642
MscI	TGGCCA	2 cut(s)	2379, 3108
MseI	TTAA	7 cut(s)	741, 1569, 1965, 3077, 3443, 3590, 3626
Msp20I	TGGCCA	2 cut(s)	2379, 3108
MspA1I	CMGCKG	6 cut(s)	1172, 1271, 1717, 2831, 3463, 3673
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	7 cut(s)	145, 653, 1989, 2005, 2493, 2702, 3110
MunI	CAATTG	1 cut(s)	2184
MvaI	CCWGG	6 cut(s)	653, 1989, 2005, 2493, 2702, 3110
NciI	CCSGG	1 cut(s)	145
NlaIV	GGNNCC	8 cut(s)	909, 1320, 1408, 1528, 1563, 1747, 2226, 3368
NmuCI	GTSAC	5 cut(s)	155, 958, 2123, 3112, 3298
NsbI	TGCGCA	1 cut(s)	2141
NspI	RCATGY	5 cut(s)	1394, 1493, 2107, 2131, 2257
PaeI	GCATGC	1 cut(s)	1394
PagI	TCATGA	1 cut(s)	3031
PciI	ACATGT	1 cut(s)	2253
PciSI	GCTCTTC	1 cut(s)	209
PdmI	GAANNNNTTC	2 cut(s)	1608, 3642
PflMI	CCANNNNNTGG	2 cut(s)	1403, 2991
PfoI	TCCNGGA	1 cut(s)	2491
PscI	ACATGT	1 cut(s)	2253
PshAI	GACNNNNGTC	1 cut(s)	2016
Psp1406I	AACGTT	1 cut(s)	2686
Psp6I	CCWGG	6 cut(s)	651, 1987, 2003, 2491, 2700, 3108
PspEI	GGTNACC	2 cut(s)	3112, 3298
PspFI	CCCAGC	4 cut(s)	209, 2306, 3326, 3463
PspGI	CCWGG	6 cut(s)	651, 1987, 2003, 2491, 2700, 3108
PspN4I	GGNNCC	8 cut(s)	909, 1320, 1408, 1528, 1563, 1747, 2226, 3368
PspOMI	GGGCCC	1 cut(s)	2224
PspPI	GGNCC	6 cut(s)	1384, 2011, 2224, 2225, 2364, 2698
PsrI	GAACNNNNNNTAC	2 cut(s)	2991, 3023
PstI	CTGCAG	1 cut(s)	2836
PstNI	CAGNNNCTG	3 cut(s)	734, 2645, 2897
PsuI	RGATCY	6 cut(s)	907, 1561, 2270, 2445, 2842, 3514
PvuII	CAGCTG	4 cut(s)	1172, 1271, 1717, 2831
SalI	GTCGAC	1 cut(s)	3558
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	7 cut(s)	741, 1569, 1965, 3077, 3443, 3590, 3626
Sau96I	GGNCC	6 cut(s)	1384, 2011, 2224, 2225, 2364, 2698
ScaI	AGTACT	1 cut(s)	934
ScrFI	CCNGG	7 cut(s)	145, 653, 1989, 2005, 2493, 2702, 3110
SduI	GDGCHC	3 cut(s)	681, 2228, 3492
SfcI	CTRYAG	3 cut(s)	1146, 2832, 2868
SinI	GGWCC	3 cut(s)	1384, 2011, 2364
SmiI	ATTTAAAT	1 cut(s)	3591
SpeI	ACTAGT	1 cut(s)	344
SphI	GCATGC	1 cut(s)	1394
StyD4I	CCNGG	7 cut(s)	143, 651, 1987, 2003, 2491, 2700, 3108
StyI	CCWWGG	2 cut(s)	1459, 1496
SwaI	ATTTAAAT	1 cut(s)	3591
TaiI	ACGT	2 cut(s)	2689, 3039
TaqI	TCGA	9 cut(s)	126, 353, 446, 1232, 1980, 2512, 2742, 2968, 3559
TaqII	GACCGA	1 cut(s)	3286
TatI	WGTACW	5 cut(s)	932, 1016, 1692, 1823, 3535
TauI	GCSGC	2 cut(s)	1639, 2306
Tru1I	TTAA	7 cut(s)	741, 1569, 1965, 3077, 3443, 3590, 3626
Tru9I	TTAA	7 cut(s)	741, 1569, 1965, 3077, 3443, 3590, 3626
TscAI	CASTG	5 cut(s)	918, 967, 1231, 2128, 2996
TseFI	GTSAC	5 cut(s)	155, 958, 2123, 3112, 3298
Tsp45I	GTSAC	5 cut(s)	155, 958, 2123, 3112, 3298
TspRI	CASTG	5 cut(s)	918, 967, 1231, 2128, 2996
Van91I	CCANNNNNTGG	2 cut(s)	1403, 2991
VpaK11BI	GGWCC	3 cut(s)	1384, 2011, 2364
XapI	RAATTY	6 cut(s)	737, 751, 1417, 1628, 2660, 3347
XbaI	TCTAGA	2 cut(s)	2974, 3010
XceI	RCATGY	5 cut(s)	1394, 1493, 2107, 2131, 2257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3142
XmaJI	CCTAGG	1 cut(s)	1496
XmiI	GTMKAC	1 cut(s)	3559
XmnI	GAANNNNTTC	2 cut(s)	1608, 3642
ZrmI	AGTACT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.