Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8516985.1

Orthogroup ID

OG0007786

Physical Location & Seq

Genomic Coordinates Forward (+)

726 .. 4415

Gene Structure 3690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8516985.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3690 bp

atggaaaatggtgatgggattttaggtgggtctcagacggtgggtgagaataaggctgaggttgttgaggagagggttgtagaggattctaatggagtcaaggatgatgtggaggaagaggtttttgaggaggcgatagagaccgggactgttggcgacagtcctcgtgcggaggattttgaagaggcgattgaggttctggatgaggctgagaagagcaaggagcaggaggaggaggctgtggagaatggtggggaggaagtagaaaaatcggtgggtggggatagtgttgatgggtttgtggggactagtgttgatgtggaagagactagtgcgtcgaagggattggcagatgaagagatggtgggtagcctagaagatgcggtaaaagatgtctcggaggttggtgctgatggacaagtagcagtttcaacaggtggggatgaggctgaccatgtgaagtgtgagaatcacgattctaaatcaaatggattgacgaatgacgggttgtcggatgcagcaaatgaggtttcagggattggtgcgggtggagaaataccaattttgactgatgtggacgaggttgatgggaatcctgttgaggttgctgagaatgagaagtctgagaaggacgaccaggataacttagttttggaagtagtggccacagatgaaaaattggagaacgaaggtgctaatcttgattctgctcctgcaactgaatttaatacggaaaatttgaaggaagctggaaatggtgaggaaataaaggacagtatcttgagtacagagaatctggatgataagactgtggatgtggtagatacttctgttggtgttactttgaagcttgaagatgataagggtgtggaattgcaagagagaaatatggatccagagcatacagaatgtgagagtactgactcaaataatgctatatttgtcactgaagcaaggcaagtggataataaagttgaagaactgagagctactatgacttgtacggatgcaggagatcaagattcaacggaagtgaaaagtgtttcttctgggcttggtttggagcatgatgtggaaacatctgaacttagaggcatttcatctgaacaacagttgtcaggggtagaaagtcctgtagcatctgaaatggcaggctcagctgtttctaaaagttctgcacctgaggacacagagaagattcaggttggtagcactgtttcgagatcagagaatatcaaagacgatgaacctcagccagctgatgaggttactcatgtagtttgcaacaatggtgctgtgcctgaggagcctgaaaagaaagaaaacaatcatgtagagaagagtagcaacagaatgaatagagtgcaggaggtccagcatgcaccagctcatggtacctctggaaattctacaaatccaactccccttcccgctcgtccagctggccttgggcgtgctgccccccttttggaacatgcacctagggcggtacagcagcctcgggtaaatggtaccgtaactcatgtgcaaaaccagcaaattgaggatcccgttaatggagaggcagaggagtcggatgagactcgtgaaaagcttcagatgatcagagtaaaatttttgcggctttcgcataggcttgggcagactccacataatgttgttgtggcccaggtcttgtacagactggggttagctgagcagctgcatgggagaagtgggggtcgtgttggtgcctttagtttcgaccgtgcgagtgctatggcggagcagctagaggcatctgggaatgaaccccttgatttctcttgtacaattatggttcttggaaagtcaggagttggtaaaagtgccaccatcaattctatatttgatgaagtgaagttcaatactgatgcttttcagatggggacaaagaaggttcaggatgtcgtgggtactgtgcaggggattaaggtaagagtcatcgacacacctgggcttctaccttcctggtcggaccagcgtcagaatgagaaaattctgctcgctgctaagcgctttatcaagaaaacacctccagatattgttttgtatcttgataggttggacatgcagagcagggatttcagtgacatgccactcttgcgcacaatcacagagatttttggggcgactatatggttcaatgcaattgtggttctaactcatgctgcatcagctccgcctgagggcccaaatggcgctgcttctagttatgacatgttcgtcactcaacgatctcatgttgtccagcaagccattcgtcaggcggctggggatatgcgccttatgaatcctgtttccttagtagagaaccactctgcttgcaggaccaatcgggctggccagagagtcttgccaaatggtcaggtttggaagcctcatttgttattgctctcttttgcatccaagatccttgctgaagctaatgcactattgaagttgcaagacagtcctcctggaagaccttttgcacctcgatctaggccacctccattacctttccttctttcctccctccttcagtcaaaaccgcagttgaagctgcctgaggatcaatttggtgatgatgatgatggcgtagatgatgatctggatgagtcttcagattcggaagatgaatcagaatttgatgaattaccaccattcaaacgtttgactaaggcccaggtggagaaactctctaaagctcagaaaaaggcatatttcgatgagttggagtatagagaaaagctttttatgaagaaacagttgaaggacgagaaaaagcgacgaaagttgatgaaaaaaatggcagctgcagcaaaggatctgccaagtgattatggtgaaactgtagaggaagaaagtgcaagtgcagcgtctgtacccgttcccatgccagatttgcccttgcctgcttcctttgattctgataatcccactcatcgttatcgatatctagattcttccaaccagtggcttgtaagacctgttctagaaactcatggttgggatcatgacgttggttatgagggcataaatgcagaaagattgtttgtcttaaatggcaaaatacccttatcattttctggccaggtcaccaaagataagaaggatgccaatgtccaaatggaactagctagttcagtcaagcatggggaagggaaggcaagttcggtaggacttgaaatgcagactgttggaaaggacttggcttatactctacgaggcgacactaggttcagtaattttaggacgaataaagcaagtgctggtgtctcggtcaccctcttgggtgatgctctatcagctgggttgaaaattgaagacaaatttattcctcataaacggttccggttggttatgacgggtggtgcaatgactgctcgtggggacattgcttatggtggtagtttggaggctcagttaagagacaaagatcatccgctgggtcgttcactatcaacttttgggctctctgtgatggattggcatggagatcttgctattggaggtaatatacagactcagattccagttggtcgacatacaaaccttataggtcgtgccaatttaaataataggggagcaggacaactgagcatccgcttaaatagttctgaacagcttcaaatagctttgattggtctcattccgctgcttagaaagttgttcacttaccctgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0019899 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

1229

Amino Acids

133.37

Weight (kDa)

4.68

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16640 AT2G16640 AT2G16640 AT3G16620
fragaria_vesca	FvH4_2g01650 FvH4_2g01650
malus_domestica	MD05G1117800.v1.1 MD10G1120800.v1.1
prunus_persica	Prupe.8G162300_v2.0.a1 Prupe.8G162300_v2.0.a1
pyrus_communis	pycom05g11180 pycom10g10400
rosa_chinensis	RchiOBHm_Chr6g0244541
rosa_laevigata	RLG00000015350
rosa_multiflora	Rmu_co8516985.1_g000001 Rmu_sc0003679.1_g000009 Rmu_sc0017888.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215770
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024900 Rh6BG019800 Rh6CG017300 Rh6DG018300
rosa_wichuraiana	Rw6G002030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	334, 2243
Acc16I	TGCGCA	1 cut(s)	2126
Acc65I	GGTACC	2 cut(s)	1394, 1511
AccB1I	GGYRCC	3 cut(s)	1394, 1511, 1730
AccB7I	CCANNNNNTGG	2 cut(s)	1391, 2976
AccBSI	CCGCTC	1 cut(s)	1433
AccI	GTMKAC	1 cut(s)	3544
AclI	AACGTT	1 cut(s)	2671
AclWI	GGATC	8 cut(s)	887, 900, 1541, 1554, 2425, 2580, 2835, 3021
AcoI	YGGCCR	3 cut(s)	663, 2362, 3091
AcsI	RAATTY	7 cut(s)	722, 736, 1405, 1613, 2016, 2645, 3332
AcuI	CTGAAG	5 cut(s)	969, 1580, 2460, 2525, 2607
AfeI	AGCGCT	1 cut(s)	2036
AfiI	CCNNNNNNNGG	5 cut(s)	1391, 1468, 1556, 2207, 2976
AflIII	ACRYGT	1 cut(s)	2238
AhdI	GACNNNNNGTC	1 cut(s)	508
AhlI	ACTAGT	2 cut(s)	308, 329
AjnI	CCWGG	7 cut(s)	636, 1668, 1972, 1988, 2476, 2685, 3093
AloI	GAACNNNNNNTCC	2 cut(s)	3157, 3189
Alw26I	GTCTC	8 cut(s)	36, 134, 320, 400, 1574, 3283, 3426, 3653
AlwI	GGATC	8 cut(s)	887, 900, 1541, 1554, 2425, 2580, 2835, 3021
AlwNI	CAGNNNCTG	1 cut(s)	2882
Ama87I	CYCGRG	1 cut(s)	1500
Aor51HI	AGCGCT	1 cut(s)	2036
AoxI	GGCC	8 cut(s)	663, 1444, 1665, 2209, 2362, 2504, 2682, 3091
ApaI	GGGCCC	1 cut(s)	2213
ApoI	RAATTY	7 cut(s)	722, 736, 1405, 1613, 2016, 2645, 3332
Asp700I	GAANNNNTTC	2 cut(s)	1593, 3627
Asp718I	GGTACC	2 cut(s)	1394, 1511
AspA2I	CCTAGG	1 cut(s)	1481
AspLEI	GCGC	4 cut(s)	2037, 2127, 2222, 2304
AspS9I	GGNCC	7 cut(s)	1372, 1666, 1996, 2209, 2210, 2349, 2683
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	8 cut(s)	23, 56, 770, 2594, 2858, 3091, 3277, 3308
AvaI	CYCGRG	1 cut(s)	1500
AvaII	GGWCC	3 cut(s)	1372, 1996, 2349
AvrII	CCTAGG	1 cut(s)	1481
AxyI	CCTNAGG	4 cut(s)	1182, 1302, 2205, 2568
BaeGI	GKGCMC	1 cut(s)	2213
BaeI	ACNNNNGTAYC	2 cut(s)	816, 849
BalI	TGGCCA	3 cut(s)	665, 2364, 3093
BamHI	GGATCC	2 cut(s)	892, 1546
BanI	GGYRCC	3 cut(s)	1394, 1511, 1730
BanII	GRGCYC	2 cut(s)	2213, 3477
BauI	CACGAG	3 cut(s)	165, 1584, 3387
BbsI	GAAGAC	3 cut(s)	2488, 2613, 3333
BbvCI	CCTCAGC	2 cut(s)	57, 1251
BccI	CCATC	9 cut(s)	8, 287, 355, 407, 581, 1862, 1897, 2588, 3478
BcgI	CGANNNNNNTGC	4 cut(s)	1554, 1588, 2261, 2295
BciT130I	CCWGG	7 cut(s)	638, 1670, 1974, 1990, 2478, 2687, 3095
BclI	TGATCA	1 cut(s)	1602
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	8 cut(s)	36, 134, 320, 400, 1574, 3283, 3426, 3653
BcuI	ACTAGT	2 cut(s)	308, 329
BfmI	CTRYAG	3 cut(s)	1134, 2817, 2853
BfoI	RGCGCY	2 cut(s)	2038, 2223
BglI	GCCNNNNNGGC	1 cut(s)	2217
BglII	AGATCT	1 cut(s)	3499
BlnI	CCTAGG	1 cut(s)	1481
BlpI	GCTNAGC	3 cut(s)	1156, 1695, 2031
BmcAI	AGTACT	1 cut(s)	919
Bme1390I	CCNGG	8 cut(s)	145, 638, 1670, 1974, 1990, 2478, 2687, 3095
Bme18I	GGWCC	3 cut(s)	1372, 1996, 2349
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmeT110I	CYCGRG	1 cut(s)	1500
BmgT120I	GGNCC	7 cut(s)	1372, 1666, 1996, 2209, 2210, 2349, 2683
BmiI	GGNNCC	8 cut(s)	894, 1308, 1396, 1513, 1548, 1732, 2211, 3353
BmrFI	CCNGG	8 cut(s)	145, 638, 1670, 1974, 1990, 2478, 2687, 3095
BmrI	ACTGGG	1 cut(s)	1694
BmuI	ACTGGG	1 cut(s)	1694
BoxI	GACNNNNGTC	1 cut(s)	2001
BpiI	GAAGAC	3 cut(s)	2488, 2613, 3333
BplI	GAGNNNNNCTC	4 cut(s)	2321, 2353, 2684, 2716
BpmI	CTGGAG	1 cut(s)	2040
Bpu10I	CCTNAGC	2 cut(s)	57, 1251
Bpu1102I	GCTNAGC	3 cut(s)	1156, 1695, 2031
BpuEI	CTTGAG	1 cut(s)	802
BpuMI	CCSGG	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	2953
BsaBI	GATNNNNATC	2 cut(s)	591, 2607
BsaI	GGTCTC	3 cut(s)	36, 134, 3653
BsaJI	CCNNGG	6 cut(s)	1447, 1481, 1499, 1668, 1973, 2685
BsaWI	WCCGGW	1 cut(s)	3354
BsaXI	ACNNNNNCTCC	2 cut(s)	3410, 3440
Bsc4I	CCNNNNNNNGG	5 cut(s)	1391, 1468, 1556, 2207, 2976
Bse1I	ACTGG	3 cut(s)	1689, 2974, 3536
Bse21I	CCTNAGG	4 cut(s)	1182, 1302, 2205, 2568
Bse3DI	GCAATG	2 cut(s)	3384, 3396
Bse8I	GATNNNNATC	2 cut(s)	591, 2607
BseBI	CCWGG	7 cut(s)	638, 1670, 1974, 1990, 2478, 2687, 3095
BseCI	ATCGAT	1 cut(s)	2953
BseDI	CCNNGG	6 cut(s)	1447, 1481, 1499, 1668, 1973, 2685
BseJI	GATNNNNATC	2 cut(s)	591, 2607
BseLI	CCNNNNNNNGG	5 cut(s)	1391, 1468, 1556, 2207, 2976
BseMI	GCAATG	2 cut(s)	3384, 3396
BseNI	ACTGG	3 cut(s)	1689, 2974, 3536
BseRI	GAGGAG	6 cut(s)	83, 143, 245, 248, 1319, 1583
BseSI	GKGCMC	1 cut(s)	2213
BseYI	CCCAGC	3 cut(s)	2291, 3311, 3448
BsgI	GTGCAG	4 cut(s)	1161, 1385, 1961, 2895
Bsh1285I	CGRYCG	1 cut(s)	1747
BshFI	GGCC	8 cut(s)	665, 1446, 1667, 2211, 2364, 2506, 2684, 3093
BshNI	GGYRCC	3 cut(s)	1394, 1511, 1730
BshVI	ATCGAT	1 cut(s)	2953
BsiEI	CGRYCG	1 cut(s)	1747
BsiHKCI	CYCGRG	1 cut(s)	1500
BsiSI	CCGG	2 cut(s)	144, 3355
BslFI	GGGAC	4 cut(s)	160, 319, 1921, 3407
BslI	CCNNNNNNNGG	5 cut(s)	1391, 1468, 1556, 2207, 2976
BsmAI	GTCTC	8 cut(s)	36, 134, 320, 400, 1574, 3283, 3426, 3653
BsmFI	GGGAC	4 cut(s)	160, 319, 1921, 3407
BsnI	GGCC	8 cut(s)	665, 1446, 1667, 2211, 2364, 2506, 2684, 3093
Bso31I	GGTCTC	3 cut(s)	36, 134, 3653
BsoBI	CYCGRG	1 cut(s)	1500
Bsp120I	GGGCCC	1 cut(s)	2209
Bsp1286I	GDGCHC	2 cut(s)	2213, 3477
Bsp1407I	TGTACA	2 cut(s)	1677, 1808
Bsp1720I	GCTNAGC	3 cut(s)	1156, 1695, 2031
BspANI	GGCC	8 cut(s)	665, 1446, 1667, 2211, 2364, 2506, 2684, 3093
BspDI	ATCGAT	1 cut(s)	2953
BspHI	TCATGA	1 cut(s)	3016
BspLI	GGNNCC	8 cut(s)	894, 1308, 1396, 1513, 1548, 1732, 2211, 3353
BspMAI	CTGCAG	1 cut(s)	2821
BspPI	GGATC	8 cut(s)	887, 900, 1541, 1554, 2425, 2580, 2835, 3021
BspQI	GCTCTTC	1 cut(s)	209
BspT107I	GGYRCC	3 cut(s)	1394, 1511, 1730
BspTNI	GGTCTC	3 cut(s)	36, 134, 3653
BsrBI	CCGCTC	1 cut(s)	1433
BsrDI	GCAATG	2 cut(s)	3384, 3396
BsrGI	TGTACA	2 cut(s)	1677, 1808
BsrI	ACTGG	3 cut(s)	1689, 2974, 3536
BssECI	CCNNGG	6 cut(s)	1447, 1481, 1499, 1668, 1973, 2685
BssSI	CACGAG	3 cut(s)	165, 1584, 3387
BssT1I	CCWWGG	2 cut(s)	1447, 1481
Bst2BI	CACGAG	3 cut(s)	165, 1584, 3387
Bst2UI	CCWGG	7 cut(s)	638, 1670, 1974, 1990, 2478, 2687, 3095
Bst6I	CTCTTC	6 cut(s)	111, 177, 209, 318, 351, 1334
BstAPI	GCANNNNNTGC	1 cut(s)	3383
BstAUI	TGTACA	2 cut(s)	1677, 1808
BstEII	GGTNACC	2 cut(s)	3097, 3283
BstH2I	RGCGCY	2 cut(s)	2038, 2223
BstHHI	GCGC	4 cut(s)	2037, 2127, 2222, 2304
BstMAI	GTCTC	8 cut(s)	36, 134, 320, 400, 1574, 3283, 3426, 3653
BstMCI	CGRYCG	1 cut(s)	1747
BstNI	CCWGG	7 cut(s)	638, 1670, 1974, 1990, 2478, 2687, 3095
BstNSI	RCATGY	5 cut(s)	1382, 1478, 2092, 2116, 2242
BstPAI	GACNNNNGTC	1 cut(s)	2001
BstPI	GGTNACC	2 cut(s)	3097, 3283
BstSCI	CCNGG	8 cut(s)	143, 636, 1668, 1972, 1988, 2476, 2685, 3093
BstSFI	CTRYAG	3 cut(s)	1134, 2817, 2853
BstSLI	GKGCMC	1 cut(s)	2213
BstV2I	GAAGAC	3 cut(s)	2488, 2613, 3333
BstX2I	RGATCY	5 cut(s)	892, 1546, 2430, 2827, 3499
BstYI	RGATCY	5 cut(s)	892, 1546, 2430, 2827, 3499
Bsu15I	ATCGAT	1 cut(s)	2953
Bsu36I	CCTNAGG	4 cut(s)	1182, 1302, 2205, 2568
BsuRI	GGCC	8 cut(s)	665, 1446, 1667, 2211, 2364, 2506, 2684, 3093
BsuTUI	ATCGAT	1 cut(s)	2953
BtsIMutI	CAGTG	4 cut(s)	945, 1212, 2113, 2981
CaiI	CAGNNNCTG	1 cut(s)	2882
CciI	TCATGA	1 cut(s)	3016
CfoI	GCGC	4 cut(s)	2037, 2127, 2222, 2304
Cfr13I	GGNCC	7 cut(s)	1372, 1666, 1996, 2209, 2210, 2349, 2683
ClaI	ATCGAT	1 cut(s)	2953
CseI	GACGC	3 cut(s)	324, 1991, 2868
CspCI	CAANNNNNGTGG	4 cut(s)	942, 977, 2324, 2359
DraI	TTTAAA	1 cut(s)	3576
DrdI	GACNNNNNNGTC	2 cut(s)	334, 2243
DriI	GACNNNNNGTC	1 cut(s)	508
DseDI	GACNNNNNNGTC	2 cut(s)	334, 2243
EaeI	YGGCCR	3 cut(s)	663, 2362, 3091
Eam1104I	CTCTTC	6 cut(s)	111, 177, 209, 318, 351, 1334
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EarI	CTCTTC	6 cut(s)	111, 177, 209, 318, 351, 1334
EciI	GGCGGA	2 cut(s)	1778, 2190
Eco130I	CCWWGG	2 cut(s)	1447, 1481
Eco24I	GRGCYC	2 cut(s)	2213, 3477
Eco31I	GGTCTC	3 cut(s)	36, 134, 3653
Eco32I	GATATC	1 cut(s)	2957
Eco47I	GGWCC	3 cut(s)	1372, 1996, 2349
Eco47III	AGCGCT	1 cut(s)	2036
Eco57I	CTGAAG	5 cut(s)	969, 1580, 2460, 2525, 2607
Eco81I	CCTNAGG	4 cut(s)	1182, 1302, 2205, 2568
Eco88I	CYCGRG	1 cut(s)	1500
Eco91I	GGTNACC	2 cut(s)	3097, 3283
EcoO109I	RGGNCCY	1 cut(s)	2209
EcoO65I	GGTNACC	2 cut(s)	3097, 3283
EcoRII	CCWGG	7 cut(s)	636, 1668, 1972, 1988, 2476, 2685, 3093
EcoRV	GATATC	1 cut(s)	2957
EcoT14I	CCWWGG	2 cut(s)	1447, 1481
EcoT38I	GRGCYC	2 cut(s)	2213, 3477
ErhI	CCWWGG	2 cut(s)	1447, 1481
FalI	AAGNNNNNCTT	2 cut(s)	1030, 1062
FaqI	GGGAC	4 cut(s)	160, 319, 1921, 3407
FauI	CCCGC	2 cut(s)	538, 1438
FbaI	TGATCA	1 cut(s)	1602
FblI	GTMKAC	1 cut(s)	3544
FriOI	GRGCYC	2 cut(s)	2213, 3477
FspI	TGCGCA	1 cut(s)	2126
GlaI	GCGC	4 cut(s)	2036, 2126, 2221, 2303
GsaI	CCCAGC	3 cut(s)	2295, 3315, 3452
GsuI	CTGGAG	1 cut(s)	2040
HaeII	RGCGCY	2 cut(s)	2038, 2223
HaeIII	GGCC	8 cut(s)	665, 1446, 1667, 2211, 2364, 2506, 2684, 3093
HapII	CCGG	2 cut(s)	144, 3355
HgaI	GACGC	3 cut(s)	324, 1991, 2868
HhaI	GCGC	4 cut(s)	2037, 2127, 2222, 2304
Hin6I	GCGC	4 cut(s)	2035, 2125, 2220, 2302
HinP1I	GCGC	4 cut(s)	2035, 2125, 2220, 2302
HincII	GTYRAC	1 cut(s)	3545
HindII	GTYRAC	1 cut(s)	3545
HindIII	AAGCTT	3 cut(s)	848, 1592, 2750
HpaII	CCGG	2 cut(s)	144, 3355
HphI	GGTGA	8 cut(s)	23, 56, 770, 2594, 2858, 3091, 3277, 3308
Hpy166II	GTNNAC	4 cut(s)	577, 3458, 3545, 3675
Hpy8I	GTNNAC	4 cut(s)	577, 3458, 3545, 3675
Hpy99I	CGWCG	2 cut(s)	340, 2793
HpyCH4IV	ACGT	2 cut(s)	2671, 3021
HpySE526I	ACGT	2 cut(s)	2671, 3021
HspAI	GCGC	4 cut(s)	2035, 2125, 2220, 2302
KpnI	GGTACC	2 cut(s)	1398, 1515
Ksp22I	TGATCA	1 cut(s)	1602
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	7 cut(s)	223, 715, 1063, 1306, 1765, 2203, 3587
MaeII	ACGT	2 cut(s)	2671, 3021
MaeIII	GTNAC	8 cut(s)	838, 943, 1267, 1516, 2108, 2245, 3097, 3283
MbiI	CCGCTC	1 cut(s)	1433
MfeI	CAATTG	1 cut(s)	2169
MflI	RGATCY	5 cut(s)	892, 1546, 2430, 2827, 3499
MhlI	GDGCHC	2 cut(s)	2213, 3477
MlsI	TGGCCA	3 cut(s)	665, 2364, 3093
MluNI	TGGCCA	3 cut(s)	665, 2364, 3093
MlyI	GAGTC	9 cut(s)	105, 917, 1576, 1580, 1639, 1968, 2379, 2627, 3520
MmeI	TCCRAC	8 cut(s)	492, 1442, 1554, 1974, 2064, 2715, 2994, 3181
Mox20I	TGGCCA	3 cut(s)	665, 2364, 3093
MroXI	GAANNNNTTC	2 cut(s)	1593, 3627
MscI	TGGCCA	3 cut(s)	665, 2364, 3093
MseI	TTAA	7 cut(s)	726, 1554, 1950, 3062, 3428, 3575, 3611
Msp20I	TGGCCA	3 cut(s)	665, 2364, 3093
MspA1I	CMGCKG	8 cut(s)	1160, 1259, 1442, 1702, 2816, 3311, 3448, 3658
MspI	CCGG	2 cut(s)	144, 3355
MspR9I	CCNGG	8 cut(s)	145, 638, 1670, 1974, 1990, 2478, 2687, 3095
MunI	CAATTG	1 cut(s)	2169
MvaI	CCWGG	7 cut(s)	638, 1670, 1974, 1990, 2478, 2687, 3095
NciI	CCSGG	1 cut(s)	145
NlaIV	GGNNCC	8 cut(s)	894, 1308, 1396, 1513, 1548, 1732, 2211, 3353
NmuCI	GTSAC	5 cut(s)	943, 2108, 2245, 3097, 3283
NsbI	TGCGCA	1 cut(s)	2126
NspI	RCATGY	5 cut(s)	1382, 1478, 2092, 2116, 2242
PaeI	GCATGC	1 cut(s)	1382
PagI	TCATGA	1 cut(s)	3016
PciI	ACATGT	1 cut(s)	2238
PciSI	GCTCTTC	1 cut(s)	209
PdmI	GAANNNNTTC	2 cut(s)	1593, 3627
PflMI	CCANNNNNTGG	2 cut(s)	1391, 2976
PfoI	TCCNGGA	1 cut(s)	2476
PleI	GAGTC	9 cut(s)	104, 917, 1576, 1579, 1639, 1967, 2378, 2626, 3520
PpsI	GAGTC	9 cut(s)	104, 917, 1576, 1579, 1639, 1967, 2378, 2626, 3520
PscI	ACATGT	1 cut(s)	2238
PshAI	GACNNNNGTC	1 cut(s)	2001
Psp1406I	AACGTT	1 cut(s)	2671
Psp6I	CCWGG	7 cut(s)	636, 1668, 1972, 1988, 2476, 2685, 3093
PspEI	GGTNACC	2 cut(s)	3097, 3283
PspFI	CCCAGC	3 cut(s)	2291, 3311, 3448
PspGI	CCWGG	7 cut(s)	636, 1668, 1972, 1988, 2476, 2685, 3093
PspN4I	GGNNCC	8 cut(s)	894, 1308, 1396, 1513, 1548, 1732, 2211, 3353
PspOMI	GGGCCC	1 cut(s)	2209
PspPI	GGNCC	7 cut(s)	1372, 1666, 1996, 2209, 2210, 2349, 2683
PsrI	GAACNNNNNNTAC	2 cut(s)	2976, 3008
PstI	CTGCAG	1 cut(s)	2821
PstNI	CAGNNNCTG	1 cut(s)	2882
PsuI	RGATCY	5 cut(s)	892, 1546, 2430, 2827, 3499
PvuII	CAGCTG	6 cut(s)	1160, 1259, 1442, 1702, 2816, 3311
SalI	GTCGAC	1 cut(s)	3543
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	7 cut(s)	726, 1554, 1950, 3062, 3428, 3575, 3611
Sau96I	GGNCC	7 cut(s)	1372, 1666, 1996, 2209, 2210, 2349, 2683
ScaI	AGTACT	1 cut(s)	919
SchI	GAGTC	9 cut(s)	105, 917, 1576, 1580, 1639, 1968, 2379, 2627, 3520
ScrFI	CCNGG	8 cut(s)	145, 638, 1670, 1974, 1990, 2478, 2687, 3095
SduI	GDGCHC	2 cut(s)	2213, 3477
SfcI	CTRYAG	3 cut(s)	1134, 2817, 2853
SinI	GGWCC	3 cut(s)	1372, 1996, 2349
SmiI	ATTTAAAT	1 cut(s)	3576
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
SpeI	ACTAGT	2 cut(s)	308, 329
SphI	GCATGC	1 cut(s)	1382
StyD4I	CCNGG	8 cut(s)	143, 636, 1668, 1972, 1988, 2476, 2685, 3093
StyI	CCWWGG	2 cut(s)	1447, 1481
SwaI	ATTTAAAT	1 cut(s)	3576
TaiI	ACGT	2 cut(s)	2674, 3024
TaqI	TCGA	8 cut(s)	338, 1220, 1743, 1965, 2497, 2727, 2953, 3544
TaqII	GACCGA	1 cut(s)	3271
TatI	WGTACW	4 cut(s)	785, 917, 1677, 1808
TauI	GCSGC	2 cut(s)	1624, 2291
Tru1I	TTAA	7 cut(s)	726, 1554, 1950, 3062, 3428, 3575, 3611
Tru9I	TTAA	7 cut(s)	726, 1554, 1950, 3062, 3428, 3575, 3611
TscAI	CASTG	4 cut(s)	952, 1219, 2113, 2981
TseFI	GTSAC	5 cut(s)	943, 2108, 2245, 3097, 3283
Tsp45I	GTSAC	5 cut(s)	943, 2108, 2245, 3097, 3283
TspGWI	ACGGA	3 cut(s)	746, 1019, 1043
TspRI	CASTG	4 cut(s)	952, 1219, 2113, 2981
Van91I	CCANNNNNTGG	2 cut(s)	1391, 2976
VpaK11BI	GGWCC	3 cut(s)	1372, 1996, 2349
XapI	RAATTY	7 cut(s)	722, 736, 1405, 1613, 2016, 2645, 3332
XbaI	TCTAGA	2 cut(s)	2959, 2995
XceI	RCATGY	5 cut(s)	1382, 1478, 2092, 2116, 2242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3127
XmaJI	CCTAGG	1 cut(s)	1481
XmiI	GTMKAC	1 cut(s)	3544
XmnI	GAANNNNTTC	2 cut(s)	1593, 3627
ZrmI	AGTACT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.