Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007786

Physical Location & Seq

Genomic Coordinates Forward (+)

3029711 .. 3034956

Gene Structure 5246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG019800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3687 bp

ATGGAAAATGGTGATGGGATTTTAGGTGGGTCTCAGACGGTGGGTGAGAATAAGGCTGAGGTTGTTGAGGAGAGGGTTGTAGAGGATTCTAATGGAGTAAAGGATGATGTGGAGGAAGAGGTTTTTGAGGAGGCGATAGAGACCGGGACTGTTGGCGACAGTCCTCGTGCGGAGGATTTTGAAGAGGCGATTGAGGTTCTGGAGGAGGCTGAGAAGAGCAAGGAGGAGGAGGAGGCTGTGGAGAACGGTGGGGAGGAAGTAGAAAAATCTGTGGGTGGGGATAGTGTTGATGGGTTTGTGGGGACTAGTGTTGATGTGGAAGAGACTAGTGCGTCGAAGGGATTGGCAGATGAAGAGATGGCGGGTAGCCTAGAAGATGCGGTAAAAGATGTCTCGGAGGTTGGTGCTGATGGACAAGTAGCAGTTTCGACAGGTGGGGATGAGGCTGACCATGTGAAGTGTGAGAATCACGATTCTAAATCAAATGGATTGACGAATGACGGGTTGTCGGATGCAGCAAATGAGGTTTCAGGGATTGGTGCGGGTGGAGAAATACCAATTTTGACTGATGTGGACGAGGTTGATGGGAAGCCCGTTGAGGTTGCTGAGAATGAGAAGTCTGAGAAGGACGACCAGGATAACTTAGTTTTGGAAGTAGTGGCCACAGATGAAAAATTGGAGAACGAAGGTGCTAATCTTGATTCTGCTCCTGCAACTGAATTTAATACGGAAAATTTGAAGGAAGCTGGAAATGGTGAGGAGATAAAGGAGAATATCTTGAGTACAGAGAATCTGGATGATAAGACTGTGGATGTGGTAGATACTTCTGTTGGTGTTACTTTGAAGCTTGAAGATGATAAGGGTGTGGAATTGCAAGAGAGAAATATGGATCCAGAGCATACAGAATGTGAGAGTACTGACTCAAATAATGCTATATTTGTCACTGAAGCAAGGCAAGTGGATAATAAAGTTGAAGAACTGAGAGCTACTATGACTTGTACGGATGCAGGAGATCAAGATTCAATGAAAGTGAAAAGTGTTTCTTCTGGGCTTGGTTTGGAGCATGATGTGGACACATCTGACCTTAGAGGCATTTCATCTGAACAACAGTTGTCAGGGGTAGAAAGTCCTGTAGCATCTGAAATGGCAGGCTCTGCTGTTTCTAAAAGTTCTGCACCTGAGGACACAGAGAAGATTCAGGGTGGTAGCACTGTTCCGAGATCAGAGAATATCAAAGACGATGAACCTCAGCCAGCTGATGAGGTTGCTCATGTAGTTTGCAACAATGGTGCTGTGCCTGAGGAGCCTGAAAAGAAAGAAAACAATCATGTAGAGAAGAGTAGCAACAGAATGAATAGAGTGCAGGAGGTCCAGCATGCACCAGCTCATGGTACCTCTGGAAATTCTACAAATCCAACTCCCCTTCCCGCTCGTCCAGCTGGCCTTGGGCGTGCCGCCCCCCTTTTGGAACATGCACCTAGGGCGGTACAGCAGCCTCGGGTAAATGGTACCGTATCTCATGTGCAAAACCAGCAAATTGAGGATCCTGTTAATGGAGAGGCAGAGGAGTCGGATGAGACTCGTGAAAAGCTTCAGATGATCAGAGTAAAATTTTTGCGCCTTTCGCATAGGCTTGGGCAGACTCCACATAATGTTGTTGTGGCCCAGGTCTTGTACAGACTGGGGTTAGCTGAGCAGCTGCATGGGAGAAGTGGGGGTCGTGTTGGTGCCTTTAGTTTCGACCGTGCGAGTGCTATGGCGGAGCAGCTAGAGGCATCTGGGAATGAACCCCTTGATTTCTCTTGTACAATTATGGTTCTTGGAAAGTCAGGAGTTGGTAAAAGTGCCACCATCAATTCTATATTTGATGAAGTGAAGTTCAATACTGATGCTTTTCAGATGGGGACAAAGAAGGTTCAGGATGTCGTGGGTACCGTGCAGGGGATTAAGGTAAGAGTCATCGACACACCTGGGCTTCTACCTTCCTGGTCGGACCAGCGTCAGAATGAGAAAATTCTGCTCGCTGCTAAGCGCTTTATCAAGAAAACACCTCCAGATATTGTTTTGTATCTTGATAGGTTGGACATGCAGAGCAGGGATTTCAGTGACATGCCACTCTTGCGCACAATCACAGAGATTTTTGGGGCGACTATATGGTTCAATGCAATTGTGGTTCTGACTCATGCTGCATCAGCTCCGCCTGAGGGCCCAAATGGCGCTGCTTCTAGTTATGACATGTTCGTCACTCAACGATCTCATGTTGTCCAGCAAGCCATTCGTCAGGCGGCTGGGGATATGCGCCTTATGAATCCTGTTTCCTTAGTAGAGAACCACTCTGCTTGCAGGACCAATCGGGCTGGCCAGAGAGTCTTGCCAAATGGTCAGGTTTGGAAGCCTCATTTGTTATTGCTCTCTTTTGCATCCAAGATCCTTGCTGAAGCTAATGCACTATTGAAGTTGCAAGACAGTCCTCCTGGAAGACCTTTTGCACCTCGATCTAGGCCACCTCCATTACCTTTCCTTCTTTCCTCCCTCCTTCAGTCAAAACCACAGTTGAAGCTGCCTGAGGATCAATTTGGTGATGATGATGATGGCGTAGATGATGATCTGGATGAGTCTTCAGATTCTGAAGATGAATCAGAATTTGATGAATTACCACCATTCAAACGTTTGACTAAGGCCCAGGTGGAGAAACTCTCTAAAGCTCAGAAAAAGGCATATTTCGATGAGTTGGAGTATAGAGAAAAGCTTTTTATGAAGAAACAGTTGAAGGACGAGAAAAAGCGACGAAAGTTGATGAAAAAAATGGCAGCTGCAGCAAAGGATCTGCCAAGTGATTATGGTGAAACTGTAGAGGAAGAAAGTGCAAGTGCAGCGTCTGTACCCGTTCCCATGCCAGATTTGCCCTTGCCTGCTTCCTTTGATTCTGATAATCCCACTCATCGTTATCGATATCTAGATTCTTCCAACCAGTGGCTTGTAAGACCTGTTCTAGAAACTCATGGTTGGGATCATGACGTTGGTTATGAGGGCATAAATGCAGAAAGATTGTTTGTCTTAAATGGCAAAATACCCTTATCATTTTCTGGCCAGGTCACCAAAGATAAGAAGGATGCCAATGTCCAAATGGAACTAGCTAGTTCAGTAAAGCATGGGGAAGGGAAGGCAAGTTCGGTAGGACTTGAAATGCAGACTGTTGGAAAGGACTTGGCTTATACTCTACGAGGCGACACTAGGTTCAGTAATTTTAGGACGAATAAAGCAAGTGCTGGTGTCTCGGTCACCCTCTTGGGTGATGCTCTATCAGCTGGGTTGAAAATTGAAGACAAATTTATTCCTCATAAACGGTTCCGGTTGGTTATGACGGGTGGTGCAATGACTGCTCGTGGGGACATTGCTTATGGTGGTAGTTTGGAGGCTCAGTTAAGAGACAAAGATCATCCGCTGGGTCGTTCACTATCAACTTTTGGGCTCTCTGTGATGGATTGGCATGGAGATCTTGCTATTGGAGGTAATATACAGACTCAGATTCCAGTTGGTCGACATACAAACCTTATAGGTCGTGCCAATTTAAATAATAGGGGAGCAGGACAACTGAGCATCCGCTTAAATAGTTCAGAACAGCTTCAAATAGCTTTGATTGGTCTCATTCCGCTGCTTAGAAAGTTGTTCATTTACCCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0019899 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

1228

Amino Acids

133.22

Weight (kDa)

4.7

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIG1	PF04548	602 - 760	5.7e-25	AIG1 family
MMR_HSR1	PF01926	604 - 691	1.4e-09	50S ribosome-binding GTPase
TOC159_MAD	PF11886	961 - 1224	1e-122	Translocase of chloroplast 159/132, membrane anchor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16640 AT2G16640 AT2G16640 AT3G16620
fragaria_vesca	FvH4_2g01650 FvH4_2g01650
malus_domestica	MD05G1117800.v1.1 MD10G1120800.v1.1
prunus_persica	Prupe.8G162300_v2.0.a1 Prupe.8G162300_v2.0.a1
pyrus_communis	pycom05g11180 pycom10g10400
rosa_chinensis	RchiOBHm_Chr6g0244541
rosa_laevigata	RLG00000015350
rosa_multiflora	Rmu_co8516985.1_g000001 Rmu_sc0003679.1_g000009 Rmu_sc0017888.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215770
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024900 Rh6BG019800 Rh6CG017300 Rh6DG018300
rosa_wichuraiana	Rw6G002030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	331, 2240
Acc16I	TGCGCA	1 cut(s)	2123
Acc65I	GGTACC	3 cut(s)	1391, 1508, 1931
AccB1I	GGYRCC	4 cut(s)	1391, 1508, 1727, 1931
AccB7I	CCANNNNNTGG	2 cut(s)	1388, 2973
AccBSI	CCGCTC	1 cut(s)	1430
AccI	GTMKAC	1 cut(s)	3541
AclI	AACGTT	1 cut(s)	2668
AclWI	GGATC	8 cut(s)	884, 897, 1538, 1551, 2422, 2577, 2832, 3018
AcoI	YGGCCR	3 cut(s)	660, 2359, 3088
AcsI	RAATTY	7 cut(s)	719, 733, 1402, 1610, 2013, 2642, 3329
AcuI	CTGAAG	6 cut(s)	966, 1577, 2457, 2522, 2604, 2649
AfeI	AGCGCT	1 cut(s)	2033
AfiI	CCNNNNNNNGG	6 cut(s)	1388, 1465, 1553, 1941, 2204, 2973
AflIII	ACRYGT	1 cut(s)	2235
AhdI	GACNNNNNGTC	1 cut(s)	505
AhlI	ACTAGT	2 cut(s)	305, 326
AjnI	CCWGG	7 cut(s)	633, 1665, 1969, 1985, 2473, 2682, 3090
AloI	GAACNNNNNNTCC	2 cut(s)	3154, 3186
Alw26I	GTCTC	8 cut(s)	36, 134, 317, 397, 1571, 3280, 3423, 3650
AlwI	GGATC	8 cut(s)	884, 897, 1538, 1551, 2422, 2577, 2832, 3018
AlwNI	CAGNNNCTG	3 cut(s)	1154, 2627, 2879
Ama87I	CYCGRG	1 cut(s)	1497
Aor51HI	AGCGCT	1 cut(s)	2033
AoxI	GGCC	8 cut(s)	660, 1441, 1662, 2206, 2359, 2501, 2679, 3088
ApaI	GGGCCC	1 cut(s)	2210
ApoI	RAATTY	7 cut(s)	719, 733, 1402, 1610, 2013, 2642, 3329
Asp700I	GAANNNNTTC	2 cut(s)	1590, 3624
Asp718I	GGTACC	3 cut(s)	1391, 1508, 1931
AspA2I	CCTAGG	1 cut(s)	1478
AspLEI	GCGC	5 cut(s)	1620, 2034, 2124, 2219, 2301
AspS9I	GGNCC	7 cut(s)	1369, 1663, 1993, 2206, 2207, 2346, 2680
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	8 cut(s)	23, 56, 767, 2591, 2855, 3088, 3274, 3305
AvaI	CYCGRG	1 cut(s)	1497
AvaII	GGWCC	3 cut(s)	1369, 1993, 2346
AvrII	CCTAGG	1 cut(s)	1478
AxyI	CCTNAGG	4 cut(s)	1179, 1299, 2202, 2565
BaeGI	GKGCMC	1 cut(s)	2210
BaeI	ACNNNNGTAYC	2 cut(s)	813, 846
BalI	TGGCCA	3 cut(s)	662, 2361, 3090
BamHI	GGATCC	2 cut(s)	889, 1543
BanI	GGYRCC	4 cut(s)	1391, 1508, 1727, 1931
BanII	GRGCYC	2 cut(s)	2210, 3474
BauI	CACGAG	3 cut(s)	165, 1581, 3384
BbsI	GAAGAC	3 cut(s)	2485, 2610, 3330
BbvCI	CCTCAGC	2 cut(s)	57, 1248
BccI	CCATC	9 cut(s)	8, 284, 352, 404, 578, 1859, 1894, 2585, 3475
BcgI	CGANNNNNNTGC	4 cut(s)	1551, 1585, 2258, 2292
BciT130I	CCWGG	7 cut(s)	635, 1667, 1971, 1987, 2475, 2684, 3092
BclI	TGATCA	1 cut(s)	1599
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	8 cut(s)	36, 134, 317, 397, 1571, 3280, 3423, 3650
BcuI	ACTAGT	2 cut(s)	305, 326
BfmI	CTRYAG	3 cut(s)	1131, 2814, 2850
BfoI	RGCGCY	2 cut(s)	2035, 2220
BglI	GCCNNNNNGGC	1 cut(s)	2214
BglII	AGATCT	1 cut(s)	3496
BlnI	CCTAGG	1 cut(s)	1478
BlpI	GCTNAGC	2 cut(s)	1692, 2028
BmcAI	AGTACT	1 cut(s)	916
Bme1390I	CCNGG	8 cut(s)	145, 635, 1667, 1971, 1987, 2475, 2684, 3092
Bme18I	GGWCC	3 cut(s)	1369, 1993, 2346
BmeRI	GACNNNNNGTC	1 cut(s)	505
BmeT110I	CYCGRG	1 cut(s)	1497
BmgT120I	GGNCC	7 cut(s)	1369, 1663, 1993, 2206, 2207, 2346, 2680
BmiI	GGNNCC	9 cut(s)	891, 1305, 1393, 1510, 1545, 1729, 1933, 2208, 3350
BmrFI	CCNGG	8 cut(s)	145, 635, 1667, 1971, 1987, 2475, 2684, 3092
BmrI	ACTGGG	1 cut(s)	1691
BmuI	ACTGGG	1 cut(s)	1691
BoxI	GACNNNNGTC	1 cut(s)	1998
BpiI	GAAGAC	3 cut(s)	2485, 2610, 3330
BplI	GAGNNNNNCTC	4 cut(s)	2318, 2350, 2681, 2713
BpmI	CTGGAG	2 cut(s)	221, 2037
Bpu10I	CCTNAGC	2 cut(s)	57, 1248
Bpu1102I	GCTNAGC	2 cut(s)	1692, 2028
BpuEI	CTTGAG	1 cut(s)	799
BpuMI	CCSGG	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	2950
BsaBI	GATNNNNATC	1 cut(s)	2604
BsaI	GGTCTC	3 cut(s)	36, 134, 3650
BsaJI	CCNNGG	6 cut(s)	1444, 1478, 1496, 1665, 1970, 2682
BsaWI	WCCGGW	1 cut(s)	3351
BsaXI	ACNNNNNCTCC	2 cut(s)	3407, 3437
Bsc4I	CCNNNNNNNGG	6 cut(s)	1388, 1465, 1553, 1941, 2204, 2973
Bse1I	ACTGG	3 cut(s)	1686, 2971, 3533
Bse21I	CCTNAGG	4 cut(s)	1179, 1299, 2202, 2565
Bse3DI	GCAATG	2 cut(s)	3381, 3393
Bse8I	GATNNNNATC	1 cut(s)	2604
BseBI	CCWGG	7 cut(s)	635, 1667, 1971, 1987, 2475, 2684, 3092
BseCI	ATCGAT	1 cut(s)	2950
BseDI	CCNNGG	6 cut(s)	1444, 1478, 1496, 1665, 1970, 2682
BseJI	GATNNNNATC	1 cut(s)	2604
BseLI	CCNNNNNNNGG	6 cut(s)	1388, 1465, 1553, 1941, 2204, 2973
BseMI	GCAATG	2 cut(s)	3381, 3393
BseNI	ACTGG	3 cut(s)	1686, 2971, 3533
BseRI	GAGGAG	9 cut(s)	83, 143, 218, 239, 242, 245, 773, 1316, 1580
BseSI	GKGCMC	1 cut(s)	2210
BseYI	CCCAGC	3 cut(s)	2288, 3308, 3445
BsgI	GTGCAG	4 cut(s)	1158, 1382, 1958, 2892
Bsh1285I	CGRYCG	1 cut(s)	1744
BshFI	GGCC	8 cut(s)	662, 1443, 1664, 2208, 2361, 2503, 2681, 3090
BshNI	GGYRCC	4 cut(s)	1391, 1508, 1727, 1931
BshVI	ATCGAT	1 cut(s)	2950
BsiEI	CGRYCG	1 cut(s)	1744
BsiHKCI	CYCGRG	1 cut(s)	1497
BsiSI	CCGG	2 cut(s)	144, 3352
BslFI	GGGAC	4 cut(s)	160, 316, 1918, 3404
BslI	CCNNNNNNNGG	6 cut(s)	1388, 1465, 1553, 1941, 2204, 2973
BsmAI	GTCTC	8 cut(s)	36, 134, 317, 397, 1571, 3280, 3423, 3650
BsmFI	GGGAC	4 cut(s)	160, 316, 1918, 3404
BsnI	GGCC	8 cut(s)	662, 1443, 1664, 2208, 2361, 2503, 2681, 3090
Bso31I	GGTCTC	3 cut(s)	36, 134, 3650
BsoBI	CYCGRG	1 cut(s)	1497
Bsp120I	GGGCCC	1 cut(s)	2206
Bsp1286I	GDGCHC	2 cut(s)	2210, 3474
Bsp1407I	TGTACA	2 cut(s)	1674, 1805
Bsp1720I	GCTNAGC	2 cut(s)	1692, 2028
BspANI	GGCC	8 cut(s)	662, 1443, 1664, 2208, 2361, 2503, 2681, 3090
BspDI	ATCGAT	1 cut(s)	2950
BspHI	TCATGA	1 cut(s)	3013
BspLI	GGNNCC	9 cut(s)	891, 1305, 1393, 1510, 1545, 1729, 1933, 2208, 3350
BspMAI	CTGCAG	1 cut(s)	2818
BspPI	GGATC	8 cut(s)	884, 897, 1538, 1551, 2422, 2577, 2832, 3018
BspQI	GCTCTTC	1 cut(s)	209
BspT107I	GGYRCC	4 cut(s)	1391, 1508, 1727, 1931
BspTNI	GGTCTC	3 cut(s)	36, 134, 3650
BsrBI	CCGCTC	1 cut(s)	1430
BsrDI	GCAATG	2 cut(s)	3381, 3393
BsrGI	TGTACA	2 cut(s)	1674, 1805
BsrI	ACTGG	3 cut(s)	1686, 2971, 3533
BssECI	CCNNGG	6 cut(s)	1444, 1478, 1496, 1665, 1970, 2682
BssSI	CACGAG	3 cut(s)	165, 1581, 3384
BssT1I	CCWWGG	2 cut(s)	1444, 1478
Bst2BI	CACGAG	3 cut(s)	165, 1581, 3384
Bst2UI	CCWGG	7 cut(s)	635, 1667, 1971, 1987, 2475, 2684, 3092
Bst6I	CTCTTC	6 cut(s)	111, 177, 209, 315, 348, 1331
BstAPI	GCANNNNNTGC	2 cut(s)	1154, 3380
BstAUI	TGTACA	2 cut(s)	1674, 1805
BstEII	GGTNACC	2 cut(s)	3094, 3280
BstH2I	RGCGCY	2 cut(s)	2035, 2220
BstHHI	GCGC	5 cut(s)	1620, 2034, 2124, 2219, 2301
BstMAI	GTCTC	8 cut(s)	36, 134, 317, 397, 1571, 3280, 3423, 3650
BstMCI	CGRYCG	1 cut(s)	1744
BstNI	CCWGG	7 cut(s)	635, 1667, 1971, 1987, 2475, 2684, 3092
BstNSI	RCATGY	5 cut(s)	1379, 1475, 2089, 2113, 2239
BstPAI	GACNNNNGTC	1 cut(s)	1998
BstPI	GGTNACC	2 cut(s)	3094, 3280
BstSCI	CCNGG	8 cut(s)	143, 633, 1665, 1969, 1985, 2473, 2682, 3090
BstSFI	CTRYAG	3 cut(s)	1131, 2814, 2850
BstSLI	GKGCMC	1 cut(s)	2210
BstV2I	GAAGAC	3 cut(s)	2485, 2610, 3330
BstX2I	RGATCY	5 cut(s)	889, 1543, 2427, 2824, 3496
BstYI	RGATCY	5 cut(s)	889, 1543, 2427, 2824, 3496
Bsu15I	ATCGAT	1 cut(s)	2950
Bsu36I	CCTNAGG	4 cut(s)	1179, 1299, 2202, 2565
BsuRI	GGCC	8 cut(s)	662, 1443, 1664, 2208, 2361, 2503, 2681, 3090
BsuTUI	ATCGAT	1 cut(s)	2950
BtsIMutI	CAGTG	4 cut(s)	942, 1209, 2110, 2978
CaiI	CAGNNNCTG	3 cut(s)	1154, 2627, 2879
CciI	TCATGA	1 cut(s)	3013
CfoI	GCGC	5 cut(s)	1620, 2034, 2124, 2219, 2301
Cfr13I	GGNCC	7 cut(s)	1369, 1663, 1993, 2206, 2207, 2346, 2680
ClaI	ATCGAT	1 cut(s)	2950
CseI	GACGC	3 cut(s)	321, 1988, 2865
CspCI	CAANNNNNGTGG	4 cut(s)	939, 974, 2321, 2356
DraI	TTTAAA	1 cut(s)	3573
DrdI	GACNNNNNNGTC	2 cut(s)	331, 2240
DriI	GACNNNNNGTC	1 cut(s)	505
DseDI	GACNNNNNNGTC	2 cut(s)	331, 2240
EaeI	YGGCCR	3 cut(s)	660, 2359, 3088
Eam1104I	CTCTTC	6 cut(s)	111, 177, 209, 315, 348, 1331
Eam1105I	GACNNNNNGTC	1 cut(s)	505
EarI	CTCTTC	6 cut(s)	111, 177, 209, 315, 348, 1331
EciI	GGCGGA	2 cut(s)	1775, 2187
Eco130I	CCWWGG	2 cut(s)	1444, 1478
Eco24I	GRGCYC	2 cut(s)	2210, 3474
Eco31I	GGTCTC	3 cut(s)	36, 134, 3650
Eco32I	GATATC	1 cut(s)	2954
Eco47I	GGWCC	3 cut(s)	1369, 1993, 2346
Eco47III	AGCGCT	1 cut(s)	2033
Eco57I	CTGAAG	6 cut(s)	966, 1577, 2457, 2522, 2604, 2649
Eco81I	CCTNAGG	4 cut(s)	1179, 1299, 2202, 2565
Eco88I	CYCGRG	1 cut(s)	1497
Eco91I	GGTNACC	2 cut(s)	3094, 3280
EcoO109I	RGGNCCY	1 cut(s)	2206
EcoO65I	GGTNACC	2 cut(s)	3094, 3280
EcoRII	CCWGG	7 cut(s)	633, 1665, 1969, 1985, 2473, 2682, 3090
EcoRV	GATATC	1 cut(s)	2954
EcoT14I	CCWWGG	2 cut(s)	1444, 1478
EcoT38I	GRGCYC	2 cut(s)	2210, 3474
ErhI	CCWWGG	2 cut(s)	1444, 1478
FalI	AAGNNNNNCTT	2 cut(s)	1027, 1059
FaqI	GGGAC	4 cut(s)	160, 316, 1918, 3404
FauI	CCCGC	3 cut(s)	355, 535, 1435
FbaI	TGATCA	1 cut(s)	1599
FblI	GTMKAC	1 cut(s)	3541
FriOI	GRGCYC	2 cut(s)	2210, 3474
FspI	TGCGCA	1 cut(s)	2123
GlaI	GCGC	5 cut(s)	1619, 2033, 2123, 2218, 2300
GsaI	CCCAGC	3 cut(s)	2292, 3312, 3449
GsuI	CTGGAG	2 cut(s)	221, 2037
HaeII	RGCGCY	2 cut(s)	2035, 2220
HaeIII	GGCC	8 cut(s)	662, 1443, 1664, 2208, 2361, 2503, 2681, 3090
HapII	CCGG	2 cut(s)	144, 3352
HgaI	GACGC	3 cut(s)	321, 1988, 2865
HhaI	GCGC	5 cut(s)	1620, 2034, 2124, 2219, 2301
Hin6I	GCGC	5 cut(s)	1618, 2032, 2122, 2217, 2299
HinP1I	GCGC	5 cut(s)	1618, 2032, 2122, 2217, 2299
HincII	GTYRAC	1 cut(s)	3542
HindII	GTYRAC	1 cut(s)	3542
HindIII	AAGCTT	3 cut(s)	845, 1589, 2747
HpaII	CCGG	2 cut(s)	144, 3352
HphI	GGTGA	8 cut(s)	23, 56, 767, 2591, 2855, 3088, 3274, 3305
Hpy166II	GTNNAC	4 cut(s)	574, 1072, 3455, 3542
Hpy8I	GTNNAC	4 cut(s)	574, 1072, 3455, 3542
Hpy99I	CGWCG	2 cut(s)	337, 2790
HpyCH4IV	ACGT	2 cut(s)	2668, 3018
HpySE526I	ACGT	2 cut(s)	2668, 3018
HspAI	GCGC	5 cut(s)	1618, 2032, 2122, 2217, 2299
KpnI	GGTACC	3 cut(s)	1395, 1512, 1935
Ksp22I	TGATCA	1 cut(s)	1599
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	6 cut(s)	712, 1060, 1303, 1762, 2200, 3584
MaeII	ACGT	2 cut(s)	2668, 3018
MaeIII	GTNAC	6 cut(s)	835, 940, 2105, 2242, 3094, 3280
MbiI	CCGCTC	1 cut(s)	1430
MfeI	CAATTG	1 cut(s)	2166
MflI	RGATCY	5 cut(s)	889, 1543, 2427, 2824, 3496
MhlI	GDGCHC	2 cut(s)	2210, 3474
MlsI	TGGCCA	3 cut(s)	662, 2361, 3090
MluNI	TGGCCA	3 cut(s)	662, 2361, 3090
MlyI	GAGTC	9 cut(s)	914, 1573, 1577, 1636, 1965, 2173, 2376, 2624, 3517
MmeI	TCCRAC	8 cut(s)	489, 1439, 1551, 1971, 2061, 2712, 2991, 3178
Mox20I	TGGCCA	3 cut(s)	662, 2361, 3090
MroXI	GAANNNNTTC	2 cut(s)	1590, 3624
MscI	TGGCCA	3 cut(s)	662, 2361, 3090
MseI	TTAA	7 cut(s)	723, 1551, 1947, 3059, 3425, 3572, 3608
Msp20I	TGGCCA	3 cut(s)	662, 2361, 3090
MspA1I	CMGCKG	7 cut(s)	1256, 1439, 1699, 2813, 3308, 3445, 3655
MspI	CCGG	2 cut(s)	144, 3352
MspR9I	CCNGG	8 cut(s)	145, 635, 1667, 1971, 1987, 2475, 2684, 3092
MunI	CAATTG	1 cut(s)	2166
MvaI	CCWGG	7 cut(s)	635, 1667, 1971, 1987, 2475, 2684, 3092
NciI	CCSGG	1 cut(s)	145
NlaIV	GGNNCC	9 cut(s)	891, 1305, 1393, 1510, 1545, 1729, 1933, 2208, 3350
NmuCI	GTSAC	5 cut(s)	940, 2105, 2242, 3094, 3280
NsbI	TGCGCA	1 cut(s)	2123
NspI	RCATGY	5 cut(s)	1379, 1475, 2089, 2113, 2239
PaeI	GCATGC	1 cut(s)	1379
PagI	TCATGA	1 cut(s)	3013
PciI	ACATGT	1 cut(s)	2235
PciSI	GCTCTTC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	1932
PdmI	GAANNNNTTC	2 cut(s)	1590, 3624
PflMI	CCANNNNNTGG	2 cut(s)	1388, 2973
PfoI	TCCNGGA	1 cut(s)	2473
PleI	GAGTC	9 cut(s)	914, 1573, 1576, 1636, 1964, 2173, 2375, 2623, 3517
PpsI	GAGTC	9 cut(s)	914, 1573, 1576, 1636, 1964, 2173, 2375, 2623, 3517
PscI	ACATGT	1 cut(s)	2235
PshAI	GACNNNNGTC	1 cut(s)	1998
Psp1406I	AACGTT	1 cut(s)	2668
Psp6I	CCWGG	7 cut(s)	633, 1665, 1969, 1985, 2473, 2682, 3090
PspEI	GGTNACC	2 cut(s)	3094, 3280
PspFI	CCCAGC	3 cut(s)	2288, 3308, 3445
PspGI	CCWGG	7 cut(s)	633, 1665, 1969, 1985, 2473, 2682, 3090
PspN4I	GGNNCC	9 cut(s)	891, 1305, 1393, 1510, 1545, 1729, 1933, 2208, 3350
PspOMI	GGGCCC	1 cut(s)	2206
PspPI	GGNCC	7 cut(s)	1369, 1663, 1993, 2206, 2207, 2346, 2680
PsrI	GAACNNNNNNTAC	2 cut(s)	2973, 3005
PstI	CTGCAG	1 cut(s)	2818
PstNI	CAGNNNCTG	3 cut(s)	1154, 2627, 2879
PsuI	RGATCY	5 cut(s)	889, 1543, 2427, 2824, 3496
PvuII	CAGCTG	5 cut(s)	1256, 1439, 1699, 2813, 3308
SalI	GTCGAC	1 cut(s)	3540
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	7 cut(s)	723, 1551, 1947, 3059, 3425, 3572, 3608
Sau96I	GGNCC	7 cut(s)	1369, 1663, 1993, 2206, 2207, 2346, 2680
ScaI	AGTACT	1 cut(s)	916
SchI	GAGTC	9 cut(s)	914, 1573, 1577, 1636, 1965, 2173, 2376, 2624, 3517
ScrFI	CCNGG	8 cut(s)	145, 635, 1667, 1971, 1987, 2475, 2684, 3092
SduI	GDGCHC	2 cut(s)	2210, 3474
SfcI	CTRYAG	3 cut(s)	1131, 2814, 2850
SinI	GGWCC	3 cut(s)	1369, 1993, 2346
SmiI	ATTTAAAT	1 cut(s)	3573
SmlI	CTYRAG	1 cut(s)	778
SmoI	CTYRAG	1 cut(s)	778
SpeI	ACTAGT	2 cut(s)	305, 326
SphI	GCATGC	1 cut(s)	1379
StyD4I	CCNGG	8 cut(s)	143, 633, 1665, 1969, 1985, 2473, 2682, 3090
StyI	CCWWGG	2 cut(s)	1444, 1478
SwaI	ATTTAAAT	1 cut(s)	3573
TaiI	ACGT	2 cut(s)	2671, 3021
TaqI	TCGA	8 cut(s)	335, 428, 1740, 1962, 2494, 2724, 2950, 3541
TaqII	GACCGA	1 cut(s)	3268
TatI	WGTACW	4 cut(s)	782, 914, 1674, 1805
TauI	GCSGC	2 cut(s)	1457, 2288
Tru1I	TTAA	7 cut(s)	723, 1551, 1947, 3059, 3425, 3572, 3608
Tru9I	TTAA	7 cut(s)	723, 1551, 1947, 3059, 3425, 3572, 3608
TscAI	CASTG	4 cut(s)	949, 1216, 2110, 2978
TseFI	GTSAC	5 cut(s)	940, 2105, 2242, 3094, 3280
Tsp45I	GTSAC	5 cut(s)	940, 2105, 2242, 3094, 3280
TspGWI	ACGGA	2 cut(s)	743, 1016
TspRI	CASTG	4 cut(s)	949, 1216, 2110, 2978
Van91I	CCANNNNNTGG	2 cut(s)	1388, 2973
VpaK11BI	GGWCC	3 cut(s)	1369, 1993, 2346
XapI	RAATTY	7 cut(s)	719, 733, 1402, 1610, 2013, 2642, 3329
XbaI	TCTAGA	2 cut(s)	2956, 2992
XceI	RCATGY	5 cut(s)	1379, 1475, 2089, 2113, 2239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3124
XmaJI	CCTAGG	1 cut(s)	1478
XmiI	GTMKAC	1 cut(s)	3541
XmnI	GAANNNNTTC	2 cut(s)	1590, 3624
ZrmI	AGTACT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.