Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012736

Physical Location & Seq

Genomic Coordinates Reverse (-)

14759420 .. 14762412

Gene Structure 2993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTTGCTGTTAATTTGCAGTAATATATATTACATAAATGATAATCTGGACAAGAGGACTTGGACTTATATCTTCGGAGCTTGCTGTGCCACCACTGTCTTTATCCCTTCATTTCACAACTACAGAGTTTGGTCATTTTTGGGCCTTGTTATGACCACTTACACTGCTTGGTACCTTACCATTGCCTCCTTCCTCCATGGCCAGGTTGAGGGAGTGAAGCACTCTGGTCCGACTAAGGTGGTGCTATACTTCACTGGGGCCACAAACATTCTCTACACTTTTGGAGGACATGCTGTTACTGTGGAGATCATGCATGCGATGTGGAAACCTCAGAAGTTCAAGGCCATATATTTATTTGCTACCCTGTATGTGCTGACATTGACCCTTCCCTCTGCATCAGCAGTGTATTGGGCATTTGGAGACTTGCTTCTTAACCACTCAAACGCTTTCGCTCTCCTCCCTAAATCTCCCTTCAGAGACATGGCTGTCATTTTAATGCTCATCCACCAGTTTATAACATTTGGGTTTGCATGCACACCACTATACTTTGTGTGGGAGAAAGCCATAGGCATGCATGAATGCAAAAGCTTGTGCAAGAGAGCAGCAGCAAGACTGCCTGTGGTGATCCCAATCTGGTTCTTGGCCATCATCTTCCCATTCTTTGGACCCATCAACTCAACCGTTGGATCACTCCTAGTCAGCTTCACAGTCTACATTATCCCAGCCCTGGCCCACATTTTCACATACAGATCAGCTGCTGCAAGAGAGAATGCTGTGGAGAGTCCACCAAGGTTCCTAGGAGGATGGATAGGATCATACACAATCAATGTGTTTGTGGTGGTGTGGGTGTTTGTAGTTGGATTTGGATTCGGTGGGTGGGCGAGCATTACGAACTTTGTACACCAGATCGACACGTTTGGCCTCTTCACCAAGTGTTACCAATGCCCTCTGCCGCCGCCGCCCGCGATCTTCAACACAACCTCAGCTCCTCCTCCTCTCCACCACCCTCTGCCTAGCAATCACTCCCATACCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0007389 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010588 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022414 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:0071944 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

346

Amino Acids

38.65

Weight (kDa)

9.06

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	2 - 283	1.9e-53	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21050
fragaria_vesca	FvH4_2g01570
malus_domestica	MD05G1118600.v1.1 MD10G1121700.v1.1
prunus_persica	Prupe.8G163100_v2.0.a1
pyrus_communis	pycom05g11270 pycom10g10470
rosa_chinensis	RchiOBHm_Chr6g0244221
rosa_laevigata	RLG00000015371
rosa_multiflora	Rmu_co8323625.1_g000001 Rmu_ssc0000406.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215910
rosa_rugosa	Rorug05G0507900
rosa_samantha	Rh6AG022700 Rh6BG018500 Rh6CG015400 Rh6DG016500
rosa_wichuraiana	Rw6G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AasI	GACNNNNNNGTC	1 cut(s)	485
Acc65I	GGTACC	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	171
AccB7I	CCANNNNNTGG	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	711
AccII	CGCG	1 cut(s)	965
AciI	CCGC	4 cut(s)	953, 956, 959, 963
AclWI	GGATC	3 cut(s)	619, 694, 820
AcoI	YGGCCR	2 cut(s)	199, 642
AcuI	CTGAAG	1 cut(s)	457
AdeI	CACNNNGTG	1 cut(s)	933
AfaI	GTAC	2 cut(s)	173, 900
AfiI	CCNNNNNNNGG	4 cut(s)	202, 208, 662, 727
AflIII	ACRYGT	1 cut(s)	912
AgsI	TTSAA	2 cut(s)	340, 973
AjnI	CCWGG	2 cut(s)	201, 726
AluBI	AGCT	5 cut(s)	80, 588, 702, 755, 986
AluI	AGCT	5 cut(s)	80, 588, 702, 755, 986
Alw26I	GTCTC	2 cut(s)	414, 471
AlwI	GGATC	3 cut(s)	619, 694, 820
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	7 cut(s)	142, 199, 258, 342, 642, 729, 919
ApeKI	GCWGC	4 cut(s)	602, 605, 755, 758
Asp718I	GGTACC	1 cut(s)	171
AspA2I	CCTAGG	1 cut(s)	796
AspS9I	GGNCC	5 cut(s)	142, 227, 258, 665, 730
AsuHPI	GGTGA	2 cut(s)	634, 919
AvaII	GGWCC	2 cut(s)	227, 665
AvrII	CCTAGG	1 cut(s)	796
BalI	TGGCCA	2 cut(s)	201, 644
BanI	GGYRCC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	982
BbvI	GCAGC	4 cut(s)	614, 617, 742, 745
BccI	CCATC	3 cut(s)	653, 677, 798
BciT130I	CCWGG	2 cut(s)	203, 728
BcoDI	GTCTC	2 cut(s)	414, 471
BfaI	CTAG	3 cut(s)	695, 797, 1014
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	7 cut(s)	603, 606, 756, 759, 953, 956, 959
BlnI	CCTAGG	1 cut(s)	796
BlsI	GCNGC	7 cut(s)	604, 607, 757, 760, 954, 957, 960
Bme1390I	CCNGG	2 cut(s)	203, 728
Bme18I	GGWCC	2 cut(s)	227, 665
BmgT120I	GGNCC	5 cut(s)	142, 227, 258, 665, 730
BmiI	GGNNCC	4 cut(s)	173, 259, 667, 794
BmrFI	CCNGG	2 cut(s)	203, 728
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	404
BmuI	ACTGGG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	982
BsaBI	GATNNNNATC	1 cut(s)	629
BsaJI	CCNNGG	4 cut(s)	196, 726, 788, 796
BsaXI	ACNNNNNCTCC	2 cut(s)	970, 1000
Bsc4I	CCNNNNNNNGG	4 cut(s)	202, 208, 662, 727
Bse1I	ACTGG	2 cut(s)	259, 508
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	629
BseBI	CCWGG	2 cut(s)	203, 728
BseDI	CCNNGG	4 cut(s)	196, 726, 788, 796
BseGI	GGATG	2 cut(s)	501, 809
BseJI	GATNNNNATC	1 cut(s)	629
BseLI	CCNNNNNNNGG	4 cut(s)	202, 208, 662, 727
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	344, 996
BseNI	ACTGG	2 cut(s)	259, 508
BseRI	GAGGAG	4 cut(s)	446, 978, 981, 984
BseXI	GCAGC	4 cut(s)	614, 617, 742, 745
BseYI	CCCAGC	1 cut(s)	721
Bsh1236I	CGCG	1 cut(s)	965
BshFI	GGCC	7 cut(s)	144, 201, 260, 344, 644, 731, 921
BshNI	GGYRCC	1 cut(s)	171
BslI	CCNNNNNNNGG	4 cut(s)	202, 208, 662, 727
BsmAI	GTCTC	2 cut(s)	414, 471
BsmI	GAATGC	2 cut(s)	584, 775
BsnI	GGCC	7 cut(s)	144, 201, 260, 344, 644, 731, 921
Bsp1407I	TGTACA	1 cut(s)	898
Bsp143I	GATC	7 cut(s)	306, 624, 686, 749, 812, 906, 966
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	4 cut(s)	953, 956, 959, 963
BspANI	GGCC	7 cut(s)	144, 201, 260, 344, 644, 731, 921
BspCNI	CTCAG	2 cut(s)	343, 995
BspFNI	CGCG	1 cut(s)	965
BspLI	GGNNCC	4 cut(s)	173, 259, 667, 794
BspPI	GGATC	3 cut(s)	619, 694, 820
BspT107I	GGYRCC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	898
BsrI	ACTGG	2 cut(s)	259, 508
BssECI	CCNNGG	4 cut(s)	196, 726, 788, 796
BssMI	GATC	7 cut(s)	306, 624, 686, 749, 812, 906, 966
BssT1I	CCWWGG	3 cut(s)	196, 788, 796
Bst2UI	CCWGG	2 cut(s)	203, 728
Bst4CI	ACNGT	4 cut(s)	97, 301, 682, 709
Bst6I	CTCTTC	1 cut(s)	929
BstAUI	TGTACA	1 cut(s)	898
BstC8I	GCNNGC	6 cut(s)	82, 315, 532, 572, 883, 963
BstDEI	CTNAG	3 cut(s)	234, 330, 982
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	501, 809
BstFNI	CGCG	1 cut(s)	965
BstKTI	GATC	7 cut(s)	309, 627, 689, 752, 815, 909, 969
BstMAI	GTCTC	2 cut(s)	414, 471
BstMBI	GATC	7 cut(s)	306, 624, 686, 749, 812, 906, 966
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 958
BstNI	CCWGG	2 cut(s)	203, 728
BstNSI	RCATGY	4 cut(s)	293, 317, 534, 574
BstSCI	CCNGG	2 cut(s)	201, 726
BstSFI	CTRYAG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	965
BstV1I	GCAGC	4 cut(s)	614, 617, 742, 745
BsuRI	GGCC	7 cut(s)	144, 201, 260, 344, 644, 731, 921
BtgI	CCRYGG	1 cut(s)	196
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	501, 809
BtsI	GCAGTG	2 cut(s)	162, 408
BtsIMutI	CAGTG	4 cut(s)	93, 162, 252, 408
Cac8I	GCNNGC	6 cut(s)	82, 315, 532, 572, 883, 963
CaiI	CAGNNNCTG	1 cut(s)	758
Cfr13I	GGNCC	5 cut(s)	142, 227, 258, 665, 730
Csp6I	GTAC	2 cut(s)	172, 899
CviAII	CATG	8 cut(s)	197, 290, 310, 314, 481, 531, 571, 575
CviQI	GTAC	2 cut(s)	172, 899
DdeI	CTNAG	3 cut(s)	234, 330, 982
DpnI	GATC	7 cut(s)	308, 626, 688, 751, 814, 908, 968
DpnII	GATC	7 cut(s)	306, 624, 686, 749, 812, 906, 966
DraIII	CACNNNGTG	1 cut(s)	933
DrdI	GACNNNNNNGTC	1 cut(s)	485
DseDI	GACNNNNNNGTC	1 cut(s)	485
EaeI	YGGCCR	2 cut(s)	199, 642
Eam1104I	CTCTTC	1 cut(s)	929
EarI	CTCTTC	1 cut(s)	929
Eco130I	CCWWGG	3 cut(s)	196, 788, 796
Eco47I	GGWCC	2 cut(s)	227, 665
Eco57I	CTGAAG	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	201, 726
EcoT14I	CCWWGG	3 cut(s)	196, 788, 796
EcoT22I	ATGCAT	2 cut(s)	315, 576
ErhI	CCWWGG	3 cut(s)	196, 788, 796
FaeI	CATG	8 cut(s)	200, 293, 313, 317, 484, 534, 574, 578
FatI	CATG	8 cut(s)	196, 289, 309, 313, 480, 530, 570, 574
FauI	CCCGC	1 cut(s)	970
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	7 cut(s)	603, 606, 756, 759, 953, 956, 959
FokI	GGATG	2 cut(s)	488, 816
Fsp4HI	GCNGC	7 cut(s)	603, 606, 756, 759, 953, 956, 959
FspBI	CTAG	3 cut(s)	695, 797, 1014
GluI	GCNGC	7 cut(s)	603, 606, 756, 759, 953, 956, 959
GsaI	CCCAGC	1 cut(s)	725
HaeIII	GGCC	7 cut(s)	144, 201, 260, 344, 644, 731, 921
Hin1II	CATG	8 cut(s)	200, 293, 313, 317, 484, 534, 574, 578
HindIII	AAGCTT	1 cut(s)	586
HinfI	GANTC	2 cut(s)	781, 867
HphI	GGTGA	2 cut(s)	634, 919
Hpy166II	GTNNAC	3 cut(s)	712, 785, 901
Hpy188I	TCNGA	4 cut(s)	77, 231, 333, 476
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	3 cut(s)	712, 785, 901
HpyAV	CCTTC	4 cut(s)	117, 199, 395, 481
HpyCH4III	ACNGT	4 cut(s)	97, 301, 682, 709
HpyCH4IV	ACGT	1 cut(s)	914
HpyCH4V	TGCA	9 cut(s)	18, 313, 395, 530, 534, 574, 582, 594, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 958
HpyF3I	CTNAG	3 cut(s)	234, 330, 982
HpySE526I	ACGT	1 cut(s)	914
Hsp92II	CATG	8 cut(s)	200, 293, 313, 317, 484, 534, 574, 578
KpnI	GGTACC	1 cut(s)	175
Kzo9I	GATC	7 cut(s)	306, 624, 686, 749, 812, 906, 966
LmnI	GCTCC	2 cut(s)	77, 991
Lsp1109I	GCAGC	4 cut(s)	614, 617, 742, 745
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	3 cut(s)	695, 797, 1014
MaeII	ACGT	1 cut(s)	914
MaeIII	GTNAC	2 cut(s)	295, 935
MalI	GATC	7 cut(s)	308, 626, 688, 751, 814, 908, 968
MboI	GATC	7 cut(s)	306, 624, 686, 749, 812, 906, 966
MboII	GAAGA	4 cut(s)	64, 643, 916, 961
MlsI	TGGCCA	2 cut(s)	201, 644
MluCI	AATT	1 cut(s)	12
MluNI	TGGCCA	2 cut(s)	201, 644
MlyI	GAGTC	1 cut(s)	790
MmeI	TCCRAC	3 cut(s)	254, 664, 838
Mox20I	TGGCCA	2 cut(s)	201, 644
Mph1103I	ATGCAT	2 cut(s)	315, 576
MscI	TGGCCA	2 cut(s)	201, 644
MseI	TTAA	3 cut(s)	11, 432, 494
MslI	CAYNNNNRTG	2 cut(s)	494, 569
Msp20I	TGGCCA	2 cut(s)	201, 644
MspA1I	CMGCKG	1 cut(s)	755
MspR9I	CCNGG	2 cut(s)	203, 728
Mva1269I	GAATGC	2 cut(s)	584, 775
MvaI	CCWGG	2 cut(s)	203, 728
MvnI	CGCG	1 cut(s)	965
MwoI	GCNNNNNNNGC	2 cut(s)	86, 958
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	7 cut(s)	306, 624, 686, 749, 812, 906, 966
NlaIII	CATG	8 cut(s)	200, 293, 313, 317, 484, 534, 574, 578
NlaIV	GGNNCC	4 cut(s)	173, 259, 667, 794
NsiI	ATGCAT	2 cut(s)	315, 576
NspI	RCATGY	4 cut(s)	293, 317, 534, 574
PaeI	GCATGC	3 cut(s)	317, 534, 574
PctI	GAATGC	2 cut(s)	584, 775
PfeI	GAWTC	1 cut(s)	867
PflMI	CCANNNNNTGG	1 cut(s)	662
PkrI	GCNGC	7 cut(s)	604, 607, 757, 760, 954, 957, 960
PleI	GAGTC	1 cut(s)	789
PpsI	GAGTC	1 cut(s)	789
PsiI	TTATAA	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	201, 726
PspFI	CCCAGC	1 cut(s)	721
PspGI	CCWGG	2 cut(s)	201, 726
PspN4I	GGNNCC	4 cut(s)	173, 259, 667, 794
PspPI	GGNCC	5 cut(s)	142, 227, 258, 665, 730
PstNI	CAGNNNCTG	1 cut(s)	758
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	2 cut(s)	173, 900
RsaNI	GTAC	2 cut(s)	172, 899
RseI	CAYNNNNRTG	2 cut(s)	494, 569
SaqAI	TTAA	3 cut(s)	11, 432, 494
SatI	GCNGC	7 cut(s)	603, 606, 756, 759, 953, 956, 959
Sau3AI	GATC	7 cut(s)	306, 624, 686, 749, 812, 906, 966
Sau96I	GGNCC	5 cut(s)	142, 227, 258, 665, 730
SchI	GAGTC	1 cut(s)	790
ScrFI	CCNGG	2 cut(s)	203, 728
SfaNI	GCATC	1 cut(s)	404
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	2 cut(s)	227, 665
SmiMI	CAYNNNNRTG	2 cut(s)	494, 569
SphI	GCATGC	3 cut(s)	317, 534, 574
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	4 cut(s)	953, 956, 959, 963
SspMI	CTAG	3 cut(s)	695, 797, 1014
StyD4I	CCNGG	2 cut(s)	201, 726
StyI	CCWWGG	3 cut(s)	196, 788, 796
TaaI	ACNGT	4 cut(s)	97, 301, 682, 709
TaiI	ACGT	1 cut(s)	917
TaqI	TCGA	1 cut(s)	909
TasI	AATT	1 cut(s)	12
TatI	WGTACW	1 cut(s)	898
TauI	GCSGC	3 cut(s)	955, 958, 961
TfiI	GAWTC	1 cut(s)	867
Tru1I	TTAA	3 cut(s)	11, 432, 494
Tru9I	TTAA	3 cut(s)	11, 432, 494
TscAI	CASTG	4 cut(s)	100, 169, 259, 408
TseI	GCWGC	4 cut(s)	602, 605, 755, 758
TspDTI	ATGAA	2 cut(s)	99, 591
TspRI	CASTG	4 cut(s)	100, 169, 259, 408
Van91I	CCANNNNNTGG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	227, 665
XceI	RCATGY	4 cut(s)	293, 317, 534, 574
XmaJI	CCTAGG	1 cut(s)	796
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	3 cut(s)	695, 797, 1014
Zsp2I	ATGCAT	2 cut(s)	315, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.