pycom05g13090

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010891
Physical Location & Seq
Forward (+)
16669496 .. 16672829
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1653 bp
ATGGGTGGGGAGGGCGATTCCAGCGAGCCTAAAGTCAGTGGCCAAGGAGGAGAAGGAGGAGAGCAGATTAACATTCGATGCTCGAATGGTTCCAAGTTTTTGGTGAGGGCGAGCCTGGACTCAACTGTTGGGGCATTCAAGGAAGTTTTGGCTCAGAATTGCGATATTCCAGCTGATCAGCAGAGGTTGATTTACAAAGGACGTATTTTGAAGGACGACCAGACCCTCACTAGTTATGGTCTGCAGGCAGATCATACTGTTCACATGGTCCGTGCCTTTGCTGCACCTGCATCAACCCCCGCTCCTCCTGCTGTTAATGCTACTTCTGCTAGTCCTACAACTGCACCAGGTGTTACTCGCGGTGTCGGTTCCACTGAGCGTGAGGGGCTTCAGACTCCCGACCTTGGGGCATCTTTGTTGTTTGGGCAGGGTTTAAACCCACTCGGCAGTGGTGGAGGACAGGGGTTATTTGGAGCTGGTCTTCCGGAATTTGAACAAGTGCAGCAGCAACTGACTCAGAACCCGAACATGATGAGGGACATAATGAACACGCCTGCCATTCAGAGTTTGATGAATAACCCTGATTTGATGCGTGGCTTGATTATGAACAATCCGCAAATGCGTGATATCATTGACCGGAACCCAGAGCTTGCACATGTACTTAATGATCCTGGCATTCTCCGACAGACATTGGAAGCTGCAAGGAACCCTGAACTCATGCGTGAGATGATGCGCAACACTGACAGGGCAATGAGTAACATTGAATCTTCCCCTGAGGGATTCAACATGCTGAGGCGGATGTATGAAAACGTTCAGGAGCCATTTTTGAATGCTACAACCGGGAATGCTGGAAATGATTTGGGTTCAAATCCATTTTCTGCTCTTTTGGGCAACCAGGGTGGGGCACAGGCCCGGGATGGGTCTAACAACCCTTCAACCACTGGCTCAGAAACACCTGCAGGTTCTGTTGCTCCTAATACAAACCCACTTCCTAACCCTTGGGGCGCTGCTGGTGGAGGAAATCAGCCAAATACTACCAGGACAAATTCTGTTGGGGATGGAAGGGCAGCCGGTATTGCTGGCCTGGGAGGTCTTGGTCTCCCCGGAATGGAACAGATGCTTGGTGGCATGCCAGATGCTAATGCAATGAATCAGCTTTTGCAGAATCCAGCGATATCACAAATGATGCAAAGCATGCTTTCCAATCCCCAGTACATGAATCAGATTCTGAATCCACAACTACGCGGAATGGTTGATTCAAATCCTCAACTTAGAGAAATGATGCAAAATCCAGAGCTACTGCGGCAGTTAACAAACCCTGAAACAATGCAGCAAATGCTCGCGTTACAGCAGTCGCTATTTTCAGGCAATCGACAGCAACCAACTCAGGATCCAACTCTCACCGGTGGTGCTACAGGTGCCCCCAATAATACTGGGTTGGAGATGCTGATGAACATGTTTGGAGGTCTAGGAGCCGGCAGCTTGGCCACTGCAAACCCTAATGTACCACCGGAAGAGCTGTATGAAACTCAGCTAAGGCAGCTTCAAGAAATGGGTTTCTTCGATACCCAAGAGAATATCAGGGCATTGCAAGCCACTTCTGGGAACGTCCACGCTGCGGTGGAGCGACTTTTAGGGAATCCCGGGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005776 GO:0005783 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006950 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010604 GO:0010646 GO:0010941 GO:0010959 GO:0012505 GO:0016020 GO:0016043 GO:0016234 GO:0016235 GO:0016236 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019941 GO:0022411 GO:0022607 GO:0022898 GO:0023051 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031593 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032434 GO:0032436 GO:0032879 GO:0032984 GO:0032991 GO:0033554 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0034976 GO:0035973 GO:0036293 GO:0036294 GO:0036503 GO:0042176 GO:0042221 GO:0042802 GO:0042981 GO:0043067 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043269 GO:0043271 GO:0043632 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051924 GO:0051926 GO:0060255 GO:0061136 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070013 GO:0070482 GO:0070887 GO:0070925 GO:0071453 GO:0071456 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0097352 GO:0140030 GO:1900407 GO:1901019 GO:1901020 GO:1901339 GO:1901340 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902175 GO:1902531 GO:1902882 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903169 GO:1903170 GO:1903201 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1904062 GO:1904063 GO:1904292 GO:1904294 GO:1905037 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2001233 GO:2001242 GO:2001257 GO:2001258
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
UBA ubiquitin

Protein Analysis

551

Amino Acids

58.27

Weight (kDa)

4.75

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 22 - 90 3.6e-08 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 23 - 91 4.8e-21 Ubiquitin family
UBQLN1 PF23195 170 - 292 5.7e-52 Ubiquilin-1-like domain
UBQLN1 PF23195 380 - 458 5.5e-10 Ubiquilin-1-like domain
UBA PF00627 508 - 544 1.5e-08 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17190 AT2G17200
fragaria_vesca FvH4_2g16610 FvH4_2g16610
malus_domestica MD05G1134300.v1.1 MD10G1139400.v1.1
prunus_persica Prupe.8G178100_v2.0.a1
pyrus_communis pycom05g13090 pycom10g11840
rosa_chinensis RchiOBHm_Chr6g0280671
rosa_laevigata RLG00000013037
rosa_roxburghii Rroxscaffold_7G00187770
rosa_rugosa Rorug06G0133800 Rorug06G0133800 Rorug06G0133800
rosa_samantha Rh6AG246300 Rh6BG248500 Rh6CG249800 Rh6DG241200
rosa_wichuraiana Rw6G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 295, 964
Acc16I TGCGCA 1 cut(s) 734
Acc36I ACCTGC 3 cut(s) 295, 950, 964
AccB1I GGYRCC 1 cut(s) 1418
AccBSI CCGCTC 1 cut(s) 302
AccII CGCG 3 cut(s) 360, 1245, 1343
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 7 cut(s) 300, 360, 614, 796, 1245, 1303, 1619
AclI AACGTT 1 cut(s) 810
AclWI GGATC 3 cut(s) 662, 1385, 1398
AcoI YGGCCR 2 cut(s) 40, 1485
AcsI RAATTY 2 cut(s) 488, 1045
AcuI CTGAAG 1 cut(s) 374
AdeI CACNNNGTG 1 cut(s) 350
AfaI GTAC 3 cut(s) 660, 1214, 1506
AfiI CCNNNNNNNGG 7 cut(s) 404, 405, 901, 918, 1108, 1602, 1618
AflIII ACRYGT 2 cut(s) 655, 1455
AgeI ACCGGT 1 cut(s) 1403
AhlI ACTAGT 1 cut(s) 230
AjnI CCWGG 6 cut(s) 114, 346, 670, 894, 1037, 1083
AjuI GAANNNNNNNTTGG 2 cut(s) 1104, 1136
Alw26I GTCTC 1 cut(s) 1103
AlwI GGATC 3 cut(s) 662, 1385, 1398
AlwNI CAGNNNCTG 3 cut(s) 511, 965, 1228
Ama87I CYCGRG 2 cut(s) 912, 1643
Aor13HI TCCGGA 1 cut(s) 484
AoxI GGCC 4 cut(s) 40, 909, 1081, 1485
ApoI RAATTY 2 cut(s) 488, 1045
AsiGI ACCGGT 1 cut(s) 1403
Asp700I GAANNNNTTC 1 cut(s) 810
AspLEI GCGC 2 cut(s) 735, 1007
AspS9I GGNCC 2 cut(s) 268, 910
AsuC2I CCSGG 6 cut(s) 841, 913, 914, 1104, 1644, 1645
AsuHPI GGTGA 2 cut(s) 115, 1393
AvaI CYCGRG 2 cut(s) 912, 1643
AvaII GGWCC 1 cut(s) 268
AxyI CCTNAGG 1 cut(s) 774
BaeGI GKGCMC 2 cut(s) 907, 1423
BalI TGGCCA 2 cut(s) 42, 1487
BamHI GGATCC 1 cut(s) 1390
BanI GGYRCC 1 cut(s) 1418
BbsI GAAGAC 1 cut(s) 473
BbvCI CCTCAGC 1 cut(s) 791
BccI CCATC 2 cut(s) 911, 1052
BciT130I CCWGG 6 cut(s) 116, 348, 672, 896, 1039, 1085
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 6 cut(s) 841, 913, 914, 1104, 1644, 1645
BcoDI GTCTC 1 cut(s) 1103
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 3 cut(s) 231, 330, 1469
BfmI CTRYAG 3 cut(s) 242, 957, 1413
BfoI RGCGCY 1 cut(s) 1008
BfuAI ACCTGC 3 cut(s) 295, 950, 964
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 2 cut(s) 912, 1643
BmgT120I GGNCC 2 cut(s) 268, 910
BmiI GGNNCC 8 cut(s) 91, 370, 641, 707, 819, 1392, 1420, 1474
BmrI ACTGGG 2 cut(s) 1204, 1443
BmuI ACTGGG 2 cut(s) 1204, 1443
BpiI GAAGAC 1 cut(s) 473
Bpu10I CCTNAGC 2 cut(s) 791, 1535
BpuMI CCSGG 6 cut(s) 841, 913, 914, 1104, 1644, 1645
BsaBI GATNNNNATC 1 cut(s) 1260
BsaI GGTCTC 1 cut(s) 1103
BsaJI CCNNGG 9 cut(s) 43, 403, 895, 912, 998, 1084, 1102, 1643, 1644
BsaWI WCCGGW 4 cut(s) 484, 636, 1403, 1510
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 7 cut(s) 404, 405, 901, 918, 1108, 1602, 1618
Bse118I RCCGGY 3 cut(s) 1070, 1403, 1475
Bse1I ACTGG 3 cut(s) 946, 1210, 1438
Bse21I CCTNAGG 1 cut(s) 774
Bse3DI GCAATG 3 cut(s) 756, 1152, 1586
Bse8I GATNNNNATC 1 cut(s) 1260
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 6 cut(s) 116, 348, 672, 896, 1039, 1085
BseDI CCNNGG 9 cut(s) 43, 403, 895, 912, 998, 1084, 1102, 1643, 1644
BseGI GGATG 3 cut(s) 804, 922, 1063
BseJI GATNNNNATC 1 cut(s) 1260
BseLI CCNNNNNNNGG 7 cut(s) 404, 405, 901, 918, 1108, 1602, 1618
BseMI GCAATG 3 cut(s) 756, 1152, 1586
BseMII CTCAG 8 cut(s) 167, 366, 530, 765, 782, 960, 1400, 1544
BseNI ACTGG 3 cut(s) 946, 1210, 1438
BseRI GAGGAG 3 cut(s) 63, 72, 294
BseSI GKGCMC 2 cut(s) 907, 1423
BsgI GTGCAG 3 cut(s) 267, 327, 521
Bsh1236I CGCG 3 cut(s) 360, 1245, 1343
BshFI GGCC 4 cut(s) 42, 911, 1083, 1487
BshNI GGYRCC 1 cut(s) 1418
BshTI ACCGGT 1 cut(s) 1403
BsiHKCI CYCGRG 2 cut(s) 912, 1643
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 7 cut(s) 404, 405, 901, 918, 1108, 1602, 1618
BsmAI GTCTC 1 cut(s) 1103
BsmFI GGGAC 1 cut(s) 551
BsmI GAATGC 4 cut(s) 134, 675, 835, 850
BsnI GGCC 4 cut(s) 42, 911, 1083, 1487
Bso31I GGTCTC 1 cut(s) 1103
BsoBI CYCGRG 2 cut(s) 912, 1643
Bsp1286I GDGCHC 2 cut(s) 907, 1423
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 4 cut(s) 175, 250, 667, 1390
BspACI CCGC 7 cut(s) 300, 360, 614, 796, 1245, 1303, 1619
BspANI GGCC 4 cut(s) 42, 911, 1083, 1487
BspCNI CTCAG 8 cut(s) 166, 367, 529, 766, 783, 959, 1399, 1543
BspEI TCCGGA 1 cut(s) 484
BspFNI CGCG 3 cut(s) 360, 1245, 1343
BspLI GGNNCC 8 cut(s) 91, 370, 641, 707, 819, 1392, 1420, 1474
BspMAI CTGCAG 2 cut(s) 246, 961
BspMI ACCTGC 3 cut(s) 295, 950, 964
BspPI GGATC 3 cut(s) 662, 1385, 1398
BspQI GCTCTTC 1 cut(s) 1509
BspT107I GGYRCC 1 cut(s) 1418
BspTNI GGTCTC 1 cut(s) 1103
BsrBI CCGCTC 1 cut(s) 302
BsrDI GCAATG 3 cut(s) 756, 1152, 1586
BsrFI RCCGGY 3 cut(s) 1070, 1403, 1475
BsrI ACTGG 3 cut(s) 946, 1210, 1438
BssAI RCCGGY 3 cut(s) 1070, 1403, 1475
BssECI CCNNGG 9 cut(s) 43, 403, 895, 912, 998, 1084, 1102, 1643, 1644
BssMI GATC 4 cut(s) 175, 250, 667, 1390
BssT1I CCWWGG 3 cut(s) 43, 403, 998
Bst2UI CCWGG 6 cut(s) 116, 348, 672, 896, 1039, 1085
Bst4CI ACNGT 2 cut(s) 127, 259
Bst6I CTCTTC 1 cut(s) 1509
BstAPI GCANNNNNTGC 2 cut(s) 1195, 1336
BstF5I GGATG 3 cut(s) 804, 922, 1063
BstFNI CGCG 3 cut(s) 360, 1245, 1343
BstH2I RGCGCY 1 cut(s) 1008
BstHHI GCGC 2 cut(s) 735, 1007
BstKTI GATC 4 cut(s) 178, 253, 670, 1393
BstMAI GTCTC 1 cut(s) 1103
BstMBI GATC 4 cut(s) 175, 250, 667, 1390
BstNI CCWGG 6 cut(s) 116, 348, 672, 896, 1039, 1085
BstNSI RCATGY 5 cut(s) 659, 790, 1132, 1198, 1459
BstSFI CTRYAG 3 cut(s) 242, 957, 1413
BstSLI GKGCMC 2 cut(s) 907, 1423
BstUI CGCG 3 cut(s) 360, 1245, 1343
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 1 cut(s) 1390
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 1 cut(s) 1390
Bsu36I CCTNAGG 1 cut(s) 774
BsuRI GGCC 4 cut(s) 42, 911, 1083, 1487
BtsCI GGATG 3 cut(s) 804, 922, 1063
BtsI GCAGTG 2 cut(s) 454, 1488
BtsIMutI CAGTG 6 cut(s) 43, 372, 454, 738, 939, 1488
BveI ACCTGC 3 cut(s) 295, 950, 964
CaiI CAGNNNCTG 3 cut(s) 511, 965, 1228
CfoI GCGC 2 cut(s) 735, 1007
Cfr10I RCCGGY 3 cut(s) 1070, 1403, 1475
Cfr13I GGNCC 2 cut(s) 268, 910
Cfr9I CCCGGG 2 cut(s) 912, 1643
CsiI ACCWGGT 1 cut(s) 346
Csp6I GTAC 3 cut(s) 659, 1213, 1505
CspAI ACCGGT 1 cut(s) 1403
CspCI CAANNNNNGTGG 2 cut(s) 880, 915
CviAII CATG 9 cut(s) 265, 529, 656, 718, 787, 1129, 1195, 1216, 1456
CviQI GTAC 3 cut(s) 659, 1213, 1505
DpnI GATC 4 cut(s) 177, 252, 669, 1392
DpnII GATC 4 cut(s) 175, 250, 667, 1390
DraI TTTAAA 1 cut(s) 435
DraIII CACNNNGTG 1 cut(s) 350
EaeI YGGCCR 2 cut(s) 40, 1485
Eam1104I CTCTTC 1 cut(s) 1509
EarI CTCTTC 1 cut(s) 1509
EciI GGCGGA 1 cut(s) 811
Eco130I CCWWGG 3 cut(s) 43, 403, 998
Eco31I GGTCTC 1 cut(s) 1103
Eco32I GATATC 2 cut(s) 628, 1176
Eco47I GGWCC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 374
Eco81I CCTNAGG 1 cut(s) 774
Eco88I CYCGRG 2 cut(s) 912, 1643
EcoRII CCWGG 6 cut(s) 114, 346, 670, 894, 1037, 1083
EcoRV GATATC 2 cut(s) 628, 1176
EcoT14I CCWWGG 3 cut(s) 43, 403, 998
ErhI CCWWGG 3 cut(s) 43, 403, 998
FaeI CATG 9 cut(s) 268, 532, 659, 721, 790, 1132, 1198, 1219, 1459
FaqI GGGAC 1 cut(s) 551
FatI CATG 9 cut(s) 264, 528, 655, 717, 786, 1128, 1194, 1215, 1455
FauI CCCGC 1 cut(s) 307
FbaI TGATCA 1 cut(s) 175
FokI GGATG 3 cut(s) 811, 929, 1070
FspBI CTAG 3 cut(s) 231, 330, 1469
FspI TGCGCA 1 cut(s) 734
GlaI GCGC 2 cut(s) 734, 1006
HaeII RGCGCY 1 cut(s) 1008
HaeIII GGCC 4 cut(s) 42, 911, 1083, 1487
HhaI GCGC 2 cut(s) 735, 1007
Hin1II CATG 9 cut(s) 268, 532, 659, 721, 790, 1132, 1198, 1219, 1459
Hin6I GCGC 2 cut(s) 733, 1005
HinP1I GCGC 2 cut(s) 733, 1005
HincII GTYRAC 1 cut(s) 1311
HindII GTYRAC 1 cut(s) 1311
HpaI GTTAAC 1 cut(s) 1311
HphI GGTGA 2 cut(s) 115, 1393
Hpy166II GTNNAC 3 cut(s) 262, 1311, 1612
Hpy188I TCNGA 8 cut(s) 156, 393, 519, 564, 683, 949, 1224, 1230
Hpy188III TCNNGA 6 cut(s) 398, 485, 815, 1292, 1388, 1547
Hpy8I GTNNAC 3 cut(s) 262, 1311, 1612
HpyAV CCTTC 4 cut(s) 47, 205, 942, 1056
HpyCH4III ACNGT 2 cut(s) 127, 259
HpyCH4IV ACGT 3 cut(s) 202, 810, 1608
HpySE526I ACGT 3 cut(s) 202, 810, 1608
Hsp92II CATG 9 cut(s) 268, 532, 659, 721, 790, 1132, 1198, 1219, 1459
HspAI GCGC 2 cut(s) 733, 1005
Kpn2I TCCGGA 1 cut(s) 484
KroI GCCGGC 1 cut(s) 1475
KroNI GCCGGC 1 cut(s) 1477
Ksp22I TGATCA 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 1311
Kzo9I GATC 4 cut(s) 175, 250, 667, 1390
LguI GCTCTTC 1 cut(s) 1509
LmnI GCTCC 6 cut(s) 307, 473, 817, 976, 1472, 1624
MabI ACCWGGT 1 cut(s) 346
MaeI CTAG 3 cut(s) 231, 330, 1469
MaeII ACGT 3 cut(s) 202, 810, 1608
MaeIII GTNAC 3 cut(s) 352, 755, 1344
MalI GATC 4 cut(s) 177, 252, 669, 1392
MbiI CCGCTC 1 cut(s) 302
MboI GATC 4 cut(s) 175, 250, 667, 1390
MboII GAAGA 4 cut(s) 473, 759, 1526, 1552
MflI RGATCY 1 cut(s) 1390
MhlI GDGCHC 2 cut(s) 907, 1423
MlsI TGGCCA 2 cut(s) 42, 1487
MluCI AATT 3 cut(s) 157, 488, 1045
MluNI TGGCCA 2 cut(s) 42, 1487
MlyI GAGTC 3 cut(s) 113, 388, 508
MmeI TCCRAC 3 cut(s) 706, 1418, 1419
Mox20I TGGCCA 2 cut(s) 42, 1487
MroI TCCGGA 1 cut(s) 484
MroNI GCCGGC 1 cut(s) 1475
MroXI GAANNNNTTC 1 cut(s) 810
MscI TGGCCA 2 cut(s) 42, 1487
MseI TTAA 5 cut(s) 69, 315, 434, 663, 1310
Msp20I TGGCCA 2 cut(s) 42, 1487
MspA1I CMGCKG 1 cut(s) 173
MssI GTTTAAAC 1 cut(s) 435
Mva1269I GAATGC 4 cut(s) 134, 675, 835, 850
MvaI CCWGG 6 cut(s) 116, 348, 672, 896, 1039, 1085
MvnI CGCG 3 cut(s) 360, 1245, 1343
NaeI GCCGGC 1 cut(s) 1477
NciI CCSGG 6 cut(s) 841, 913, 914, 1104, 1644, 1645
NdeII GATC 4 cut(s) 175, 250, 667, 1390
NgoMIV GCCGGC 1 cut(s) 1475
NlaIII CATG 9 cut(s) 268, 532, 659, 721, 790, 1132, 1198, 1219, 1459
NlaIV GGNNCC 8 cut(s) 91, 370, 641, 707, 819, 1392, 1420, 1474
NmeAIII GCCGAG 1 cut(s) 423
NsbI TGCGCA 1 cut(s) 734
NspI RCATGY 5 cut(s) 659, 790, 1132, 1198, 1459
PaeI GCATGC 2 cut(s) 1132, 1198
PaqCI CACCTGC 2 cut(s) 295, 964
PciI ACATGT 2 cut(s) 655, 1455
PciSI GCTCTTC 1 cut(s) 1509
PctI GAATGC 4 cut(s) 134, 675, 835, 850
PdiI GCCGGC 1 cut(s) 1477
PdmI GAANNNNTTC 1 cut(s) 810
PinAI ACCGGT 1 cut(s) 1403
PleI GAGTC 3 cut(s) 113, 388, 508
PmeI GTTTAAAC 1 cut(s) 435
PpsI GAGTC 3 cut(s) 113, 388, 508
PscI ACATGT 2 cut(s) 655, 1455
Psp1406I AACGTT 1 cut(s) 810
Psp6I CCWGG 6 cut(s) 114, 346, 670, 894, 1037, 1083
PspGI CCWGG 6 cut(s) 114, 346, 670, 894, 1037, 1083
PspN4I GGNNCC 8 cut(s) 91, 370, 641, 707, 819, 1392, 1420, 1474
PspPI GGNCC 2 cut(s) 268, 910
PstI CTGCAG 2 cut(s) 246, 961
PstNI CAGNNNCTG 3 cut(s) 511, 965, 1228
PsuI RGATCY 1 cut(s) 1390
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 3 cut(s) 660, 1214, 1506
RsaNI GTAC 3 cut(s) 659, 1213, 1505
SapI GCTCTTC 1 cut(s) 1509
SaqAI TTAA 5 cut(s) 69, 315, 434, 663, 1310
Sau3AI GATC 4 cut(s) 175, 250, 667, 1390
Sau96I GGNCC 2 cut(s) 268, 910
SbfI CCTGCAGG 1 cut(s) 961
SchI GAGTC 3 cut(s) 113, 388, 508
SdaI CCTGCAGG 1 cut(s) 961
SduI GDGCHC 2 cut(s) 907, 1423
SexAI ACCWGGT 1 cut(s) 346
SfcI CTRYAG 3 cut(s) 242, 957, 1413
SgrAI CRCCGGYG 1 cut(s) 1403
SinI GGWCC 1 cut(s) 268
SmaI CCCGGG 2 cut(s) 914, 1645
SpeI ACTAGT 1 cut(s) 230
SphI GCATGC 2 cut(s) 1132, 1198
Sse8387I CCTGCAGG 1 cut(s) 961
Sse9I AATT 3 cut(s) 157, 488, 1045
SsiI CCGC 7 cut(s) 300, 360, 614, 796, 1245, 1303, 1619
SspMI CTAG 3 cut(s) 231, 330, 1469
StyI CCWWGG 3 cut(s) 43, 403, 998
TaaI ACNGT 2 cut(s) 127, 259
TaiI ACGT 3 cut(s) 205, 813, 1611
TaqI TCGA 4 cut(s) 76, 83, 1372, 1563
TasI AATT 3 cut(s) 157, 488, 1045
TatI WGTACW 2 cut(s) 658, 1212
TauI GCSGC 1 cut(s) 1306
Tru1I TTAA 5 cut(s) 69, 315, 434, 663, 1310
Tru9I TTAA 5 cut(s) 69, 315, 434, 663, 1310
TscAI CASTG 6 cut(s) 43, 379, 454, 745, 946, 1495
TspDTI ATGAA 8 cut(s) 560, 587, 620, 819, 1163, 1232, 1466, 1539
TspGWI ACGGA 1 cut(s) 260
TspMI CCCGGG 2 cut(s) 912, 1643
TspRI CASTG 6 cut(s) 43, 379, 454, 745, 946, 1495
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 2 cut(s) 488, 1045
XceI RCATGY 5 cut(s) 659, 790, 1132, 1198, 1459
XmaI CCCGGG 2 cut(s) 912, 1643
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 3 cut(s) 231, 330, 1469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.