Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012429

Physical Location & Seq

Genomic Coordinates Forward (+)

17527695 .. 17529174

Gene Structure 1480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGATTCAATCAGTTTCAGCAGAAGGGAATAGCAAAAGAGAGAGACTTTGCAGTTGTTCCGGCAGCCGAGATAGCCAAAGCCTTATCTGTTGGTTTTACTACGTCTCTCTCTCTCCCCCCATCTCAAGCAGAGGAGAAAAGACCGAAATTCCTCATTTACCCTCGTTGTCTTCTCAACTAACCAATATATCCTTGTCTCGCGATCACAGTCTTTCTCGGTTCGGATTGAAACCCCAAAGCCACTCTCCCTTAGACCCTAACCAGAAAAACTCGAAAGATCCGTTTCAGGGTCGGGCTTCCAAGCACATATTTTCCGCAATTTCTAACCCATGTCGCCAATCCACGAAGTTGCGTCGTTTTAGCACCGCCGCCGATCGTGGCGGTGAAATGGAAGCAGCACCAGCGCAACAGCCGCCGGATCCCATACCCAATAGGCCCTTGAGAGGCCAAAGTCTATCAAATCCCCAAACCTCCAATCTCCAATTCTTCAACAAAAACTCACCCATTTCGGCGAGAAGGGGAGAGAGCCCTTCTTCTCCGCCATTGCAGGACAGCAGCTTTCTCGAAAAGCTGAAGCTGGGTCTCGACAAAGGCGCGGAAGAAGCGGACCAGATAATCAAGAAGATGAAGGAGACGGGTCTGATTCCGAATGCGGTGGCAATGCTTGACGGGCTATGCAAAGATGGGCTGGTCCAGGAGGCCATGAAACTTTTTGGGTCGATGCGCGAAAAGGGTACAATTCCTGAGGTTGTTATATACACTGCTGTGGTTGATGGGTTTTGCAAAGCACAGAAGTTCGAAGATACTAAGAGGATTTTCAGGAAGATGCAGAGCAATGGGATTGTTCCTAATGCTTTTAGTTACACTGTGTTGATACAGGGGTTGTATAGAGCTAATAATTTGGAGGATGCTGCTGAATTTTGTAGCGAAATGTTGGAAGCCGGTTACTCGTCCAATGTAGCTACTTTTGTCGAGTTGATTGATGTGATTTGTAAGGAAAAGGATATGGAAGAAGCTGAGAGTGTTATTGGGAAGTTGAAGCAGAAGGGGTATTTGGTTAATGAGAAGGCTGTTAAAGAGTTTTTGGACAAAAGGGCACCATTTTCGCCGAGGGTTTGGGAAGCTATCTTTGGGAAGAATAAAAATTGTAAGTTTTGCTGTTCTGCCGTTGATCATTTTAGATTGAGTTTTGTTGACTTTGTTAAAATTGCGTTGCCCCATTGTATGAGGGGCTGCATGAGACCCTTGGAAATTCCCTCTGTCGATAATGATCACGATTCCTTGGGCTTTATATGGTTTTCTAGGTTCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

438

Amino Acids

48.72

Weight (kDa)

8.74

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	220 - 245	2e-06	PPR repeat
PPR_3	PF13812	237 - 293	2.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	248 - 296	1.1e-13	PPR repeat family
PPR_3	PF13812	271 - 332	3.7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	279 - 311	1.5e-06	PPR repeat
PPR_2	PF13041	287 - 332	4.4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38150 AT4G38150 AT4G38150
fragaria_vesca	FvH4_2g17180
malus_domestica	MD05G1145100.v1.1
prunus_persica	Prupe.8G183200_v2.0.a1
pyrus_communis	pycom05g14030 pycom07g10800 pycom10g12460
rosa_chinensis	RchiOBHm_Chr6g0281671
rosa_laevigata	RLG00000012952
rosa_multiflora	Rmu_co8238379.1_g000001 Rmu_sc0019758.1_g000001
rosa_rugosa	Rorug06G0142300
rosa_samantha	Rh6AG255000 Rh6BG258400 Rh6CG257200 Rh6DG249400
rosa_wichuraiana	Rw6G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1096
AccII	CGCG	3 cut(s)	201, 596, 726
AciI	CCGC	9 cut(s)	315, 366, 369, 381, 413, 539, 596, 605, 653
AclWI	GGATC	3 cut(s)	272, 413, 426
AcsI	RAATTY	3 cut(s)	147, 917, 1251
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	1 cut(s)	736
AfiI	CCNNNNNNNGG	2 cut(s)	287, 443
AgsI	TTSAA	4 cut(s)	8, 229, 490, 1039
AjnI	CCWGG	1 cut(s)	693
AjuI	GAANNNNNNNTTGG	6 cut(s)	467, 499, 1037, 1069, 1113, 1145
AleI	CACNNNNGTG	1 cut(s)	764
AluBI	AGCT	7 cut(s)	558, 571, 577, 893, 962, 1016, 1124
AluI	AGCT	7 cut(s)	558, 571, 577, 893, 962, 1016, 1124
Alw26I	GTCTC	6 cut(s)	37, 109, 201, 587, 626, 1234
AlwI	GGATC	3 cut(s)	272, 413, 426
AoxI	GGCC	3 cut(s)	434, 445, 699
ApeKI	GCWGC	5 cut(s)	63, 395, 555, 911, 1233
ApoI	RAATTY	3 cut(s)	147, 917, 1251
AspLEI	GCGC	3 cut(s)	406, 596, 726
AspS9I	GGNCC	3 cut(s)	435, 607, 691
AsuHPI	GGTGA	2 cut(s)	395, 492
AsuII	TTCGAA	1 cut(s)	798
AvaII	GGWCC	2 cut(s)	607, 691
AxyI	CCTNAGG	1 cut(s)	744
BaeGI	GKGCMC	1 cut(s)	1099
BaeI	ACNNNNGTAYC	2 cut(s)	866, 899
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	1096
BanII	GRGCYC	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	5 cut(s)	75, 407, 567, 898, 1220
BccI	CCATC	3 cut(s)	128, 677, 767
BceAI	ACGGC	1 cut(s)	1151
BcgI	CGANNNNNNTGC	4 cut(s)	544, 578, 1086, 1120
BciT130I	CCWGG	1 cut(s)	695
BclI	TGATCA	2 cut(s)	1171, 1270
BcoDI	GTCTC	6 cut(s)	37, 109, 201, 587, 626, 1234
BfaI	CTAG	1 cut(s)	1302
BisI	GCNGC	7 cut(s)	64, 369, 396, 413, 556, 912, 1234
BlsI	GCNGC	7 cut(s)	65, 370, 397, 414, 557, 913, 1235
Bme1390I	CCNGG	1 cut(s)	695
Bme18I	GGWCC	2 cut(s)	607, 691
BmgT120I	GGNCC	3 cut(s)	435, 607, 691
BmiI	GGNNCC	2 cut(s)	420, 1098
BmrFI	CCNGG	1 cut(s)	695
BmsI	GCATC	3 cut(s)	711, 816, 898
BpiI	GAAGAC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	798
BpuEI	CTTGAG	2 cut(s)	109, 460
BsaBI	GATNNNNATC	1 cut(s)	1269
BsaI	GGTCTC	2 cut(s)	587, 1234
BsaJI	CCNNGG	3 cut(s)	1109, 1245, 1281
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 443
Bse118I	RCCGGY	1 cut(s)	941
Bse21I	CCTNAGG	1 cut(s)	744
Bse3DI	GCAATG	3 cut(s)	542, 666, 841
Bse8I	GATNNNNATC	1 cut(s)	1269
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	3 cut(s)	1109, 1245, 1281
BseGI	GGATG	1 cut(s)	913
BseJI	GATNNNNATC	1 cut(s)	1269
BseLI	CCNNNNNNNGG	2 cut(s)	287, 443
BseMI	GCAATG	3 cut(s)	542, 666, 841
BseMII	CTCAG	2 cut(s)	735, 1008
BseRI	GAGGAG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	1099
BseXI	GCAGC	5 cut(s)	75, 407, 567, 898, 1220
BseYI	CCCAGC	1 cut(s)	577
Bsh1236I	CGCG	3 cut(s)	201, 596, 726
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	3 cut(s)	436, 447, 701
BshNI	GGYRCC	1 cut(s)	1096
BsiEI	CGRYCG	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	60, 416, 942
BslI	CCNNNNNNNGG	2 cut(s)	287, 443
BsmAI	GTCTC	6 cut(s)	37, 109, 201, 587, 626, 1234
BsmBI	CGTCTC	2 cut(s)	109, 626
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	3 cut(s)	436, 447, 701
Bso31I	GGTCTC	2 cut(s)	587, 1234
Bsp119I	TTCGAA	1 cut(s)	798
Bsp1286I	GDGCHC	2 cut(s)	530, 1099
Bsp143I	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
Bsp68I	TCGCGA	1 cut(s)	201
BspACI	CCGC	9 cut(s)	315, 366, 369, 381, 413, 539, 596, 605, 653
BspANI	GGCC	3 cut(s)	436, 447, 701
BspCNI	CTCAG	2 cut(s)	736, 1009
BspFNI	CGCG	3 cut(s)	201, 596, 726
BspLI	GGNNCC	2 cut(s)	420, 1098
BspPI	GGATC	3 cut(s)	272, 413, 426
BspT104I	TTCGAA	1 cut(s)	798
BspT107I	GGYRCC	1 cut(s)	1096
BspTNI	GGTCTC	2 cut(s)	587, 1234
BsrDI	GCAATG	3 cut(s)	542, 666, 841
BsrFI	RCCGGY	1 cut(s)	941
BssAI	RCCGGY	1 cut(s)	941
BssECI	CCNNGG	3 cut(s)	1109, 1245, 1281
BssMI	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
BssT1I	CCWWGG	2 cut(s)	1245, 1281
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	2 cut(s)	209, 868
BstBI	TTCGAA	1 cut(s)	798
BstDEI	CTNAG	4 cut(s)	250, 744, 807, 1017
BstF5I	GGATG	1 cut(s)	913
BstFNI	CGCG	3 cut(s)	201, 596, 726
BstHHI	GCGC	3 cut(s)	406, 596, 726
BstKTI	GATC	6 cut(s)	205, 280, 376, 421, 1174, 1273
BstMAI	GTCTC	6 cut(s)	37, 109, 201, 587, 626, 1234
BstMBI	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 401, 412, 602, 670
BstNI	CCWGG	1 cut(s)	695
BstSCI	CCNGG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	1099
BstUI	CGCG	3 cut(s)	201, 596, 726
BstV1I	GCAGC	5 cut(s)	75, 407, 567, 898, 1220
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	277, 418
BstYI	RGATCY	2 cut(s)	277, 418
Bsu36I	CCTNAGG	1 cut(s)	744
BsuRI	GGCC	3 cut(s)	436, 447, 701
BtsCI	GGATG	1 cut(s)	913
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	2 cut(s)	759, 864
BtuMI	TCGCGA	1 cut(s)	201
CfoI	GCGC	3 cut(s)	406, 596, 726
Cfr10I	RCCGGY	1 cut(s)	941
Cfr13I	GGNCC	3 cut(s)	435, 607, 691
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	735
CviAII	CATG	3 cut(s)	330, 703, 1237
CviQI	GTAC	1 cut(s)	735
DdeI	CTNAG	4 cut(s)	250, 744, 807, 1017
DpnI	GATC	6 cut(s)	204, 279, 375, 420, 1173, 1272
DpnII	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
EciI	GGCGGA	1 cut(s)	528
Eco130I	CCWWGG	2 cut(s)	1245, 1281
Eco24I	GRGCYC	1 cut(s)	530
Eco31I	GGTCTC	2 cut(s)	587, 1234
Eco47I	GGWCC	2 cut(s)	607, 691
Eco57I	CTGAAG	1 cut(s)	593
Eco81I	CCTNAGG	1 cut(s)	744
EcoO109I	RGGNCCY	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	2 cut(s)	1245, 1281
EcoT38I	GRGCYC	1 cut(s)	530
ErhI	CCWWGG	2 cut(s)	1245, 1281
Esp3I	CGTCTC	2 cut(s)	109, 626
FaeI	CATG	3 cut(s)	333, 706, 1240
FatI	CATG	3 cut(s)	329, 702, 1236
FbaI	TGATCA	2 cut(s)	1171, 1270
Fnu4HI	GCNGC	7 cut(s)	64, 369, 396, 413, 556, 912, 1234
FokI	GGATG	1 cut(s)	920
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	7 cut(s)	64, 369, 396, 413, 556, 912, 1234
FspBI	CTAG	1 cut(s)	1302
GlaI	GCGC	3 cut(s)	405, 595, 725
GluI	GCNGC	7 cut(s)	64, 369, 396, 413, 556, 912, 1234
GsaI	CCCAGC	1 cut(s)	581
HaeIII	GGCC	3 cut(s)	436, 447, 701
HapII	CCGG	3 cut(s)	60, 416, 942
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	3 cut(s)	406, 596, 726
Hin1II	CATG	3 cut(s)	333, 706, 1240
Hin6I	GCGC	3 cut(s)	404, 594, 724
HinP1I	GCGC	3 cut(s)	404, 594, 724
HincII	GTYRAC	1 cut(s)	1195
HindII	GTYRAC	1 cut(s)	1195
HinfI	GANTC	3 cut(s)	4, 643, 1277
HpaII	CCGG	3 cut(s)	60, 416, 942
HphI	GGTGA	2 cut(s)	395, 492
Hpy166II	GTNNAC	1 cut(s)	1195
Hpy188I	TCNGA	3 cut(s)	224, 642, 648
Hpy188III	TCNNGA	7 cut(s)	200, 563, 584, 619, 743, 820, 1274
Hpy8I	GTNNAC	1 cut(s)	1195
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	6 cut(s)	17, 510, 540, 622, 1039, 1060
HpyCH4III	ACNGT	2 cut(s)	209, 868
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	6 cut(s)	51, 547, 678, 783, 829, 1236
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 401, 412, 602, 670
HpyF3I	CTNAG	4 cut(s)	250, 744, 807, 1017
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	333, 706, 1240
HspAI	GCGC	3 cut(s)	404, 594, 724
Ksp22I	TGATCA	2 cut(s)	1171, 1270
Kzo9I	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
Lsp1109I	GCAGC	5 cut(s)	75, 407, 567, 898, 1220
LweI	GCATC	3 cut(s)	711, 816, 898
MaeI	CTAG	1 cut(s)	1302
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	860, 944
MalI	GATC	6 cut(s)	204, 279, 375, 420, 1173, 1272
MboI	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
MboII	GAAGA	9 cut(s)	162, 478, 525, 611, 634, 812, 835, 1022, 1147
MflI	RGATCY	2 cut(s)	277, 418
MhlI	GDGCHC	2 cut(s)	530, 1099
MluCI	AATT	9 cut(s)	147, 318, 482, 738, 898, 917, 1144, 1206, 1251
MmeI	TCCRAC	1 cut(s)	915
MseI	TTAA	3 cut(s)	1059, 1074, 1203
MslI	CAYNNNNRTG	1 cut(s)	764
MspI	CCGG	3 cut(s)	60, 416, 942
MspR9I	CCNGG	1 cut(s)	695
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	695
MvnI	CGCG	3 cut(s)	201, 596, 726
MwoI	GCNNNNNNNGC	5 cut(s)	72, 401, 412, 602, 670
NdeII	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
NlaIII	CATG	3 cut(s)	333, 706, 1240
NlaIV	GGNNCC	2 cut(s)	420, 1098
NmeAIII	GCCGAG	2 cut(s)	92, 1134
NruI	TCGCGA	1 cut(s)	201
NspV	TTCGAA	1 cut(s)	798
OliI	CACNNNNGTG	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PctI	GAATGC	1 cut(s)	655
PfeI	GAWTC	3 cut(s)	4, 643, 1277
PfoI	TCCNGGA	1 cut(s)	693
PkrI	GCNGC	7 cut(s)	65, 370, 397, 414, 557, 913, 1235
Ple19I	CGATCG	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	693
PspFI	CCCAGC	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	2 cut(s)	420, 1098
PspPI	GGNCC	3 cut(s)	435, 607, 691
PsuI	RGATCY	2 cut(s)	277, 418
PvuI	CGATCG	1 cut(s)	376
RruI	TCGCGA	1 cut(s)	201
RsaI	GTAC	1 cut(s)	736
RsaNI	GTAC	1 cut(s)	735
RseI	CAYNNNNRTG	1 cut(s)	764
SaqAI	TTAA	3 cut(s)	1059, 1074, 1203
SatI	GCNGC	7 cut(s)	64, 369, 396, 413, 556, 912, 1234
Sau3AI	GATC	6 cut(s)	202, 277, 373, 418, 1171, 1270
Sau96I	GGNCC	3 cut(s)	435, 607, 691
ScrFI	CCNGG	1 cut(s)	695
SduI	GDGCHC	2 cut(s)	530, 1099
SfaNI	GCATC	3 cut(s)	711, 816, 898
SfuI	TTCGAA	1 cut(s)	798
SinI	GGWCC	2 cut(s)	607, 691
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	2 cut(s)	124, 439
SmoI	CTYRAG	2 cut(s)	124, 439
Sse9I	AATT	9 cut(s)	147, 318, 482, 738, 898, 917, 1144, 1206, 1251
SsiI	CCGC	9 cut(s)	315, 366, 369, 381, 413, 539, 596, 605, 653
SspMI	CTAG	1 cut(s)	1302
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	2 cut(s)	1245, 1281
TaaI	ACNGT	2 cut(s)	209, 868
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	7 cut(s)	272, 564, 585, 719, 798, 972, 1263
TaqII	GACCGA	1 cut(s)	158
TasI	AATT	9 cut(s)	147, 318, 482, 738, 898, 917, 1144, 1206, 1251
TauI	GCSGC	2 cut(s)	371, 415
TfiI	GAWTC	3 cut(s)	4, 643, 1277
Tru1I	TTAA	3 cut(s)	1059, 1074, 1203
Tru9I	TTAA	3 cut(s)	1059, 1074, 1203
TscAI	CASTG	2 cut(s)	766, 871
TseI	GCWGC	5 cut(s)	63, 395, 555, 911, 1233
TspDTI	ATGAA	2 cut(s)	641, 719
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	2 cut(s)	766, 871
VpaK11BI	GGWCC	2 cut(s)	607, 691
XapI	RAATTY	3 cut(s)	147, 917, 1251
XspI	CTAG	1 cut(s)	1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.