Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012498

Physical Location & Seq

Genomic Coordinates Reverse (-)

19677051 .. 19677859

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTCCGGGTGGACCGGAACGTTCTGGACGCCTTTTTCTTGGGGAAAGCTCTAGCTGAAGCTATAAACGGCCGCATTGAGTCCGGTGTAGGCGAGTTTTTGAGCACGATTGGTAGGCTGCAAACTGAGCAGCAGAAGCTGGTAGAGGAGTTTCAGGAAGATGTACTGGAAAGAGCCAAAAAGGCCAAAGAGAAAGCAGCACACGAGGCCGTGGAGGCACAAGGAATCGTGACATCAACTACAGAATCCATAACACCAGTCACAACCACCAACGGCGTTACAGCAGTATCTTCGACAAACGCCACGACTCTGGTCACTTCTGTGAATCAATCCTCATTGTCTGAACCAGCTCCCTCAACAACTAAGGACGAACAAGATCCGGGTGACGAGGACACGGGTCTAGGAGTGCCAATTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

14.85

Weight (kDa)

4.42

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13200
fragaria_vesca	FvH4_2g19250
malus_domestica	MD05G1177500.v1.1 MD10G1165900.v1.1
prunus_persica	Prupe.8G204400_v2.0.a1
pyrus_communis	pycom05g16340 pycom05g16390 pycom10g14310
rosa_chinensis	RchiOBHm_Chr6g0285061
rosa_laevigata	RLG00000012681
rosa_multiflora	Rmu_sc0002478.1_g000008
rosa_roxburghii	Rroxscaffold_7G00183770 Rroxscaffold_7G00184070
rosa_rugosa	Rorug06G0170400
rosa_samantha	Rh6AG282100 Rh6BG282600 Rh6CG284600 Rh6DG277800
rosa_wichuraiana	Rw6G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	73
AclI	AACGTT	1 cut(s)	21
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	165
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	5 cut(s)	50, 56, 62, 139, 350
AluI	AGCT	5 cut(s)	50, 56, 62, 139, 350
Alw21I	GWGCWC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	3 cut(s)	70, 183, 207
ApeKI	GCWGC	3 cut(s)	118, 130, 197
AspS9I	GGNCC	2 cut(s)	4, 13
AsuC2I	CCSGG	2 cut(s)	8, 381
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	4, 13
BaeI	ACNNNNGTAYC	2 cut(s)	270, 303
BauI	CACGAG	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	3 cut(s)	105, 142, 209
BceAI	ACGGC	3 cut(s)	85, 194, 289
BcgI	CGANNNNNNTGC	2 cut(s)	273, 307
BcnI	CCSGG	2 cut(s)	8, 381
BfaI	CTAG	2 cut(s)	53, 401
BfmI	CTRYAG	1 cut(s)	240
BglI	GCCNNNNNGGC	2 cut(s)	182, 215
BisI	GCNGC	4 cut(s)	73, 119, 131, 198
BlsI	GCNGC	4 cut(s)	74, 120, 132, 199
Bme1390I	CCNGG	2 cut(s)	8, 381
Bme18I	GGWCC	2 cut(s)	4, 13
BmgT120I	GGNCC	2 cut(s)	4, 13
BmrFI	CCNGG	2 cut(s)	8, 381
BoxI	GACNNNNGTC	2 cut(s)	311, 396
BpuMI	CCSGG	2 cut(s)	8, 381
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	2 cut(s)	15, 83
Bse1I	ACTGG	2 cut(s)	171, 257
BseDI	CCNNGG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	171, 257
BseRI	GAGGAG	1 cut(s)	161
BseX3I	CGGCCG	1 cut(s)	70
BseXI	GCAGC	3 cut(s)	105, 142, 209
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	3 cut(s)	72, 185, 209
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	4 cut(s)	7, 16, 84, 380
BsnI	GGCC	3 cut(s)	72, 185, 209
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	3 cut(s)	72, 185, 209
BspCNI	CTCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	171, 257
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	376
BssNI	GRCGYC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	203
Bst2BI	CACGAG	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	126, 363
BstDSI	CCRYGG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 136, 182, 206, 215
BstPAI	GACNNNNGTC	2 cut(s)	311, 396
BstSCI	CCNGG	2 cut(s)	6, 379
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	105, 142, 209
BstX2I	RGATCY	1 cut(s)	376
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	376
BstZI	CGGCCG	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	72, 185, 209
BtgI	CCRYGG	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	4, 13
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	164
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	126, 363
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	70
EagI	CGGCCG	1 cut(s)	70
EclXI	CGGCCG	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	4, 13
Eco52I	CGGCCG	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	78
FaiI	YATR	2 cut(s)	65, 251
Fnu4HI	GCNGC	4 cut(s)	73, 119, 131, 198
Fsp4HI	GCNGC	4 cut(s)	73, 119, 131, 198
FspBI	CTAG	2 cut(s)	53, 401
GluI	GCNGC	4 cut(s)	73, 119, 131, 198
HaeIII	GGCC	3 cut(s)	72, 185, 209
HapII	CCGG	4 cut(s)	7, 16, 84, 380
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	30
HinfI	GANTC	5 cut(s)	80, 225, 245, 307, 325
HpaII	CCGG	4 cut(s)	7, 16, 84, 380
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	3 cut(s)	26, 155, 229
Hpy8I	GTNNAC	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 136, 182, 206, 215
HpyF3I	CTNAG	2 cut(s)	126, 363
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	3 cut(s)	105, 142, 209
MaeI	CTAG	2 cut(s)	53, 401
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	5 cut(s)	229, 259, 277, 313, 383
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	170, 282
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	1 cut(s)	411
MlyI	GAGTC	2 cut(s)	89, 301
MnlI	CCTC	6 cut(s)	139, 199, 208, 343, 364, 382
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	4 cut(s)	7, 16, 84, 380
MspR9I	CCNGG	2 cut(s)	8, 381
MunI	CAATTG	1 cut(s)	411
MwoI	GCNNNNNNNGC	5 cut(s)	127, 136, 182, 206, 215
NciI	CCSGG	2 cut(s)	8, 381
NdeII	GATC	1 cut(s)	376
NmuCI	GTSAC	4 cut(s)	229, 259, 313, 383
OliI	CACNNNNGTG	1 cut(s)	320
PfeI	GAWTC	3 cut(s)	225, 245, 325
PkrI	GCNGC	4 cut(s)	74, 120, 132, 199
PleI	GAGTC	2 cut(s)	88, 301
PpsI	GAGTC	2 cut(s)	88, 301
PshAI	GACNNNNGTC	2 cut(s)	311, 396
Psp1406I	AACGTT	1 cut(s)	21
PspPI	GGNCC	2 cut(s)	4, 13
PstNI	CAGNNNCTG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	320
SatI	GCNGC	4 cut(s)	73, 119, 131, 198
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	2 cut(s)	4, 13
SchI	GAGTC	2 cut(s)	89, 301
ScrFI	CCNGG	2 cut(s)	8, 381
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	6 cut(s)	24, 52, 58, 64, 141, 352
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	2 cut(s)	4, 13
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	2 cut(s)	53, 401
StyD4I	CCNGG	2 cut(s)	6, 379
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	293
TasI	AATT	1 cut(s)	411
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	3 cut(s)	225, 245, 325
TseFI	GTSAC	4 cut(s)	229, 259, 313, 383
TseI	GCWGC	3 cut(s)	118, 130, 197
Tsp45I	GTSAC	4 cut(s)	229, 259, 313, 383
VpaK11BI	GGWCC	2 cut(s)	4, 13
XspI	CTAG	2 cut(s)	53, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.