Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007602

Physical Location & Seq

Genomic Coordinates Forward (+)

25118530 .. 25126488

Gene Structure 7959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0170400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2469 bp

ATGGTATTGGCGCGCACAAGAGGGCGTGTGGAATTGGAATGGAAGAGAAAGGGCGAGAGGGTAATGAGGAGCTTACGCTTATTGGGGCTTCCTCTTGCTTCAACGATTAAAACTATTATTCCTTGTAAAGTTAAACCCAGGCAATTCCACCTGTATCACAGTTCGAAACCCTGTTCTTCATGCTCTTATCTCTCCCTGGGTAAAGACTCAACTGCCATTGCCGGCGCTCTTTCCCTCGCCGAGACTTCAAACTCATGTTTTCTTGGTCTCCAAATCCATGCCCGCATCATCAAGCTGGGACTCACTAGCGACATTTTTTCATTGAATAACTTGATCAAAACGTACTCGAAATGTGGGCAACTGGGTCATGCGCTCAAGGTGTTTGATGAAATGCCTGAGAGGAACCTCGTCTCTTGGACTCTGCTCGTCACGGCTGCTGTCCAGGATGGTGAGTTTGAATTGGGATTGGAGGTTTATTCGGAATTGGTAACAACGGGCTTGAGGCCGAATGAGTTCTCTGTTGCTAGTGTTCTCAAGGCATGTGCAAGTACGGAAGCGTATAAGTTTGGCATCAGTGTTCATTCTTGTGCTCTGAAACTTGGGATTGAGCAGAACCGTTTTGTCGCTAGCTCTCTTTTGAACATGTATGCTGAGTTGGAGGATGTTGAATCCGCCGAGGGGGTGTTTGAGTCTACGACCGATCTTGATACTGCTTGTTGGAATACTATGATTGGAGGGTATACGAAGTGTGGCTATGGCTTTGAATCCTGGAAGCTTGTGTCTTTAATGGTGTGCAAAGGGTTATGCATGGACCACTTCACCTTTGTTAATGCTCTTAAGGGGTGCTCCTCTATGGGGAATTTAGATTTTGGGAAGCAACTACATGGATTGCTCATCCGTAGTGACATGGAATTTAGTACCTCAGTAATGAACGCTCTTACGGATATGTACTCTACACACGGGAAGAAGGATTTGGCTTTCAAAGTTTTCAATAGGATAAAAACCAAAGACATAATATCCTGGAACACTGCATTTGGGGTCTTTTCTGACGACATAAATGCAAAAGAGCTTTTAAACTTAGTCCATGAGTTCATGCTAGCAAACATGAAGCCAAACCATGTCACTTTCTCAGTCCTGTTTAGACAATGTGGTCAGCTACTTGATCTTAACCTTGGGCATCAGTTTTTCTGCCTTGCATTGCAATTTGGAGTCTGTAATGAAGCTATTGTCAGAAGCTCATTAATGAACATGTTTTCTAGATGTGGGGCTGTGGAGATGGCATTCTTGTTTTTTGACAGCTTACTGTACAAAAGCATAACTTCTTGGAACGAGTTGATTTCTGGATGCAATTCAAACTATTACTACGTGGAAGCCATGAAGAGTTTTTACAATCTATGGCACTTGGGAGTTGGAGTCAATGAATTTACCTTGTCCATTATATTGGAAACTTGTTTTAGAGATGAACACCAACAAATGGTTAGACAAATTCATGGTGCTATTGTCAAGTCTGGCTATTCATTGCATGGATATGTTTGTAGCTCATTAATTAAATGCTATGTTAAACTTGGACAACTTGATGAGTCCTTCGAGTTTTTTAATGGGTTTGAGAGCTTGGATGTGGAAATTTGGGGGACCATGATATCTGCGCTGGTGCATCAGGGATATCATTTTCAAGCTATCAAATTTCTCAACTCTCTGATGGAAGCTGGCAGGAAGCCTGATGAATTTATCTTGGGTAGTATTCTAAGTAGTTGTGCTCATATTGCAGGCTATCATTTAACTCATTCTGTTCATTCCATTGTCATCAAAATGGGATTTCAAAAACAAGTATTTGTGGTTAGTGCAGTTATAGATGCTTACGCAAAATGCGGGGATATTGAAAATGCAAGGATGATATTTAGCCAGTCATCTAAATCTGGTGATGTAGTTATATGTAACGCTATGATCATAGCTTGTGCTCATCACGGTCTGGTCGAGGAAGCTATGGCGATCTTTGAGAAAATGAAGTTGGCTAATCTAAAGCCCAGCCAAGCCACATTTGTGTCAGTGTTAGCAGCTTGTAGCCACATGGGACGGGTTGATCAAGGTCGTTTGTTGTTTGAATCAATAGCCTCTGATCATAAGTTGGAACAAATTTCTCAGGATATTTATGGTTGCATGGTTGATTTGCTTTCACGAAATGGATTCCTTGAAGAAGCTAGACAAATAATTGAAGTAATGCCTTATACTCCTTGGCCTGCCATATTAAGATCCTTGCTTAGCGGTTGTCGGACACATGGGAACTTACAGTTGGGAGAATGGGCTGTTAAGGAGTTAGTCCAGTTGGTTCCAGAAAATGATGCACCTTATGTATTATTGTCAAAGGCTCATTCTGAAGCAGGTAGTTGGGAGGATGCTACAAAGATAAGGAGGGAAATGATAGAAAGGGGTGTACAAAAAAATACAGGATATAGTTGGATTGAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

822

Amino Acids

91.78

Weight (kDa)

6.46

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	236 - 283	7.7e-07	PPR repeat family
PPR_2	PF13041	641 - 688	2.4e-09	PPR repeat family
PPR	PF01535	643 - 670	1.9e-06	PPR repeat
E_motif	PF20431	759 - 821	1.5e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33110
fragaria_vesca	FvH4_2g19280 FvH4_3g12050
malus_domestica	MD05G1177800.v1.1 MD10G1166000.v1.1
prunus_persica	Prupe.8G204500_v2.0.a1 Prupe.8G204500_v2.0.a1
pyrus_communis	pycom05g16420 pycom10g14320
rosa_chinensis	RchiOBHm_Chr6g0285071
rosa_laevigata	RLG00000012680
rosa_multiflora	Rmu_sc0002478.1_g000007 Rmu_sc0002535.1_g000048
rosa_roxburghii	Rroxscaffold_7G00183760 Rroxscaffold_7G00184050
rosa_rugosa	Rorug05G0053700 Rorug06G0170400 Rorug06G0170400 Rorug06G0170500
rosa_samantha	Rh5CG154700 Rh5DG143200 Rh6AG282200 Rh6BG282700
rosa_wichuraiana	Rw6G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1149
Acc36I	ACCTGC	1 cut(s)	2369
AccB7I	CCANNNNNTGG	1 cut(s)	1474
AccI	GTMKAC	2 cut(s)	692, 740
AccII	CGCG	1 cut(s)	13
AciI	CCGC	4 cut(s)	283, 672, 1869, 2262
AclWI	GGATC	1 cut(s)	2244
AcsI	RAATTY	8 cut(s)	859, 911, 1421, 1485, 1623, 1682, 1724, 2133
AcuI	CTGAAG	1 cut(s)	2394
AfaI	GTAC	6 cut(s)	344, 550, 919, 950, 1307, 2433
AfiI	CCNNNNNNNGG	3 cut(s)	678, 855, 1474
AflII	CTTAAG	1 cut(s)	836
AflIII	ACRYGT	2 cut(s)	642, 1248
AjnI	CCWGG	5 cut(s)	137, 195, 441, 767, 1019
AjuI	GAANNNNNNNTTGG	6 cut(s)	956, 988, 1991, 2023, 2273, 2305
AleI	CACNNNNGTG	1 cut(s)	2039
Alw21I	GWGCWC	4 cut(s)	592, 848, 1759, 1960
Alw26I	GTCTC	3 cut(s)	236, 272, 415
AlwI	GGATC	1 cut(s)	2244
AoxI	GGCC	2 cut(s)	503, 2234
ApeKI	GCWGC	2 cut(s)	434, 2054
ApoI	RAATTY	8 cut(s)	859, 911, 1421, 1485, 1623, 1682, 1724, 2133
AseI	ATTAAT	2 cut(s)	1241, 1544
Asp700I	GAANNNNTTC	1 cut(s)	512
AspLEI	GCGC	5 cut(s)	13, 15, 227, 373, 1648
AspS9I	GGNCC	2 cut(s)	811, 1632
AsuHPI	GGTGA	3 cut(s)	461, 811, 1931
AsuII	TTCGAA	1 cut(s)	164
AsuNHI	GCTAGC	2 cut(s)	626, 1096
AvaII	GGWCC	2 cut(s)	811, 1632
BarI	GAAGNNNNNNTAC	2 cut(s)	1370, 1402
Bbv12I	GWGCWC	4 cut(s)	592, 848, 1759, 1960
BbvI	GCAGC	2 cut(s)	421, 2066
BccI	CCATC	3 cut(s)	440, 1270, 1693
BceAI	ACGGC	1 cut(s)	447
BcgI	CGANNNNNNTGC	2 cut(s)	1040, 1074
BciT130I	CCWGG	5 cut(s)	139, 197, 443, 769, 1021
BclI	TGATCA	4 cut(s)	333, 1944, 2080, 2116
BcoDI	GTCTC	3 cut(s)	236, 272, 415
BfaI	CTAG	6 cut(s)	306, 525, 627, 1097, 1257, 2199
BfmI	CTRYAG	1 cut(s)	2465
BfoI	RGCGCY	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	836
BfuAI	ACCTGC	1 cut(s)	2369
BisI	GCNGC	2 cut(s)	435, 2055
BlpI	GCTNAGC	1 cut(s)	2258
BlsI	GCNGC	2 cut(s)	436, 2056
Bme1390I	CCNGG	5 cut(s)	139, 197, 443, 769, 1021
Bme18I	GGWCC	2 cut(s)	811, 1632
BmgT120I	GGNCC	2 cut(s)	811, 1632
BmiI	GGNNCC	3 cut(s)	404, 1633, 2328
BmrFI	CCNGG	5 cut(s)	139, 197, 443, 769, 1021
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	8 cut(s)	294, 579, 1186, 1334, 1663, 1843, 2329, 2383
BmtI	GCTAGC	2 cut(s)	630, 1100
BmuI	ACTGGG	1 cut(s)	371
Bpu1102I	GCTNAGC	1 cut(s)	2258
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	3 cut(s)	359, 518, 520
BsaAI	YACGTR	1 cut(s)	1366
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	6 cut(s)	137, 195, 196, 675, 1171, 2231
BsaXI	ACNNNNNCTCC	2 cut(s)	1398, 1428
Bsc4I	CCNNNNNNNGG	3 cut(s)	678, 855, 1474
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	3 cut(s)	366, 1903, 2320
Bse3DI	GCAATG	3 cut(s)	216, 1196, 1517
BseBI	CCWGG	5 cut(s)	139, 197, 443, 769, 1021
BseDI	CCNNGG	6 cut(s)	137, 195, 196, 675, 1171, 2231
BseGI	GGATG	7 cut(s)	451, 667, 894, 1349, 1621, 1896, 2398
BseLI	CCNNNNNNNGG	3 cut(s)	678, 855, 1474
BseMI	GCAATG	3 cut(s)	216, 1196, 1517
BseMII	CTCAG	5 cut(s)	387, 642, 936, 1143, 2153
BseNI	ACTGG	3 cut(s)	366, 1903, 2320
BsePI	GCGCGC	1 cut(s)	11
BseRI	GAGGAG	2 cut(s)	82, 838
BseXI	GCAGC	2 cut(s)	421, 2066
BseYI	CCCAGC	2 cut(s)	295, 2024
BsgI	GTGCAG	1 cut(s)	1863
Bsh1236I	CGCG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	699
BshFI	GGCC	2 cut(s)	505, 2236
BsiEI	CGRYCG	1 cut(s)	699
BsiHKAI	GWGCWC	4 cut(s)	592, 848, 1759, 1960
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	3 cut(s)	312, 1645, 2085
BslI	CCNNNNNNNGG	3 cut(s)	678, 855, 1474
BsmAI	GTCTC	3 cut(s)	236, 272, 415
BsmBI	CGTCTC	1 cut(s)	415
BsmFI	GGGAC	3 cut(s)	312, 1645, 2085
BsmI	GAATGC	1 cut(s)	1280
BsnI	GGCC	2 cut(s)	505, 2236
Bso31I	GGTCTC	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	4 cut(s)	592, 848, 1759, 1960
Bsp1407I	TGTACA	2 cut(s)	1305, 2431
Bsp143I	GATC	8 cut(s)	333, 700, 1162, 1944, 1989, 2080, 2116, 2249
Bsp1720I	GCTNAGC	1 cut(s)	2258
BspACI	CCGC	4 cut(s)	283, 672, 1869, 2262
BspANI	GGCC	2 cut(s)	505, 2236
BspCNI	CTCAG	5 cut(s)	388, 643, 935, 1142, 2152
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	3 cut(s)	404, 1633, 2328
BspMI	ACCTGC	1 cut(s)	2369
BspOI	GCTAGC	2 cut(s)	630, 1100
BspPI	GGATC	1 cut(s)	2244
BspT104I	TTCGAA	1 cut(s)	164
BspTI	CTTAAG	1 cut(s)	836
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	3 cut(s)	216, 1196, 1517
BsrFI	RCCGGY	1 cut(s)	221
BsrGI	TGTACA	2 cut(s)	1305, 2431
BsrI	ACTGG	3 cut(s)	366, 1903, 2320
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	6 cut(s)	137, 195, 196, 675, 1171, 2231
BssHII	GCGCGC	1 cut(s)	11
BssMI	GATC	8 cut(s)	333, 700, 1162, 1944, 1989, 2080, 2116, 2249
BssNAI	GTATAC	1 cut(s)	741
BssT1I	CCWWGG	2 cut(s)	1171, 2231
Bst1107I	GTATAC	1 cut(s)	741
Bst2UI	CCWGG	5 cut(s)	139, 197, 443, 769, 1021
Bst4CI	ACNGT	5 cut(s)	161, 617, 1305, 1967, 2289
Bst6I	CTCTTC	2 cut(s)	38, 1373
BstAFI	CTTAAG	1 cut(s)	836
BstAUI	TGTACA	2 cut(s)	1305, 2431
BstBAI	YACGTR	1 cut(s)	1366
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	8 cut(s)	13, 223, 283, 628, 1098, 1708, 1768, 2238
BstDEI	CTNAG	8 cut(s)	396, 651, 922, 1078, 1129, 1745, 2139, 2258
BstF5I	GGATG	7 cut(s)	451, 667, 894, 1349, 1621, 1896, 2398
BstFNI	CGCG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	5 cut(s)	13, 15, 227, 373, 1648
BstKTI	GATC	8 cut(s)	336, 703, 1165, 1947, 1992, 2083, 2119, 2252
BstMAI	GTCTC	3 cut(s)	236, 272, 415
BstMBI	GATC	8 cut(s)	333, 700, 1162, 1944, 1989, 2080, 2116, 2249
BstMCI	CGRYCG	1 cut(s)	699
BstMWI	GCNNNNNNNGC	1 cut(s)	1763
BstNI	CCWGG	5 cut(s)	139, 197, 443, 769, 1021
BstNSI	RCATGY	3 cut(s)	543, 646, 1252
BstSCI	CCNGG	5 cut(s)	137, 195, 441, 767, 1019
BstSFI	CTRYAG	1 cut(s)	2465
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	2 cut(s)	421, 2066
BstX2I	RGATCY	1 cut(s)	2249
BstXI	CCANNNNNNTGG	1 cut(s)	1441
BstYI	RGATCY	1 cut(s)	2249
BstZ17I	GTATAC	1 cut(s)	741
BsuRI	GGCC	2 cut(s)	505, 2236
BtsCI	GGATG	7 cut(s)	451, 667, 894, 1349, 1621, 1896, 2398
BtsI	GCAGTG	1 cut(s)	1026
BtsIMutI	CAGTG	3 cut(s)	580, 1026, 2052
BveI	ACCTGC	1 cut(s)	2369
Cac8I	GCNNGC	8 cut(s)	13, 223, 283, 628, 1098, 1708, 1768, 2238
CfoI	GCGC	5 cut(s)	13, 15, 227, 373, 1648
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	811, 1632
Csp6I	GTAC	6 cut(s)	343, 549, 918, 949, 1306, 2432
CviQI	GTAC	6 cut(s)	343, 549, 918, 949, 1306, 2432
DdeI	CTNAG	8 cut(s)	396, 651, 922, 1078, 1129, 1745, 2139, 2258
DpnI	GATC	8 cut(s)	335, 702, 1164, 1946, 1991, 2082, 2118, 2251
DpnII	GATC	8 cut(s)	333, 700, 1162, 1944, 1989, 2080, 2116, 2249
DraI	TTTAAA	1 cut(s)	1074
DrdI	GACNNNNNNGTC	1 cut(s)	1149
DseDI	GACNNNNNNGTC	1 cut(s)	1149
Eam1104I	CTCTTC	2 cut(s)	38, 1373
EarI	CTCTTC	2 cut(s)	38, 1373
EciI	GGCGGA	1 cut(s)	661
Eco130I	CCWWGG	2 cut(s)	1171, 2231
Eco31I	GGTCTC	1 cut(s)	272
Eco32I	GATATC	2 cut(s)	1641, 1664
Eco47I	GGWCC	2 cut(s)	811, 1632
Eco57I	CTGAAG	1 cut(s)	2394
EcoRII	CCWGG	5 cut(s)	137, 195, 441, 767, 1019
EcoRV	GATATC	2 cut(s)	1641, 1664
EcoT14I	CCWWGG	2 cut(s)	1171, 2231
EcoT22I	ATGCAT	1 cut(s)	809
ErhI	CCWWGG	2 cut(s)	1171, 2231
Esp3I	CGTCTC	1 cut(s)	415
FalI	AAGNNNNNCTT	2 cut(s)	1303, 1335
FaqI	GGGAC	3 cut(s)	312, 1645, 2085
FauI	CCCGC	2 cut(s)	290, 1862
FbaI	TGATCA	4 cut(s)	333, 1944, 2080, 2116
FblI	GTMKAC	2 cut(s)	692, 740
Fnu4HI	GCNGC	2 cut(s)	435, 2055
FokI	GGATG	7 cut(s)	458, 674, 881, 1356, 1628, 1903, 2405
Fsp4HI	GCNGC	2 cut(s)	435, 2055
FspBI	CTAG	6 cut(s)	306, 525, 627, 1097, 1257, 2199
GlaI	GCGC	5 cut(s)	12, 14, 226, 372, 1647
GluI	GCNGC	2 cut(s)	435, 2055
GsaI	CCCAGC	2 cut(s)	299, 2028
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	505, 2236
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	5 cut(s)	13, 15, 227, 373, 1648
Hin6I	GCGC	5 cut(s)	11, 13, 225, 371, 1646
HinP1I	GCGC	5 cut(s)	11, 13, 225, 371, 1646
HindIII	AAGCTT	1 cut(s)	773
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	3 cut(s)	461, 811, 1931
Hpy166II	GTNNAC	3 cut(s)	693, 741, 2432
Hpy188I	TCNGA	8 cut(s)	481, 594, 1048, 1232, 1698, 2116, 2271, 2374
Hpy188III	TCNNGA	6 cut(s)	704, 1257, 1341, 2141, 2175, 2330
Hpy8I	GTNNAC	3 cut(s)	693, 741, 2432
HpyAV	CCTTC	2 cut(s)	961, 1594
HpyCH4III	ACNGT	5 cut(s)	161, 617, 1305, 1967, 2289
HpyCH4IV	ACGT	2 cut(s)	341, 1365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1763
HpyF3I	CTNAG	8 cut(s)	396, 651, 922, 1078, 1129, 1745, 2139, 2258
HpySE526I	ACGT	2 cut(s)	341, 1365
HspAI	GCGC	5 cut(s)	11, 13, 225, 371, 1646
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Ksp22I	TGATCA	4 cut(s)	333, 1944, 2080, 2116
Kzo9I	GATC	8 cut(s)	333, 700, 1162, 1944, 1989, 2080, 2116, 2249
LmnI	GCTCC	2 cut(s)	69, 851
Lsp1109I	GCAGC	2 cut(s)	421, 2066
LweI	GCATC	8 cut(s)	294, 579, 1186, 1334, 1663, 1843, 2329, 2383
MaeI	CTAG	6 cut(s)	306, 525, 627, 1097, 1257, 2199
MaeII	ACGT	2 cut(s)	341, 1365
MaeIII	GTNAC	5 cut(s)	427, 487, 902, 1120, 1934
MalI	GATC	8 cut(s)	335, 702, 1164, 1946, 1991, 2082, 2118, 2251
MboI	GATC	8 cut(s)	333, 700, 1162, 1944, 1989, 2080, 2116, 2249
MboII	GAAGA	5 cut(s)	55, 168, 976, 1390, 2204
MflI	RGATCY	1 cut(s)	2249
MhlI	GDGCHC	4 cut(s)	592, 848, 1759, 1960
MlyI	GAGTC	7 cut(s)	200, 294, 412, 698, 1218, 1422, 1589
MmeI	TCCRAC	6 cut(s)	636, 698, 1390, 2106, 2249, 2435
Mph1103I	ATGCAT	1 cut(s)	809
MroNI	GCCGGC	1 cut(s)	221
MroXI	GAANNNNTTC	1 cut(s)	512
MslI	CAYNNNNRTG	4 cut(s)	585, 1527, 1808, 2039
MspCI	CTTAAG	1 cut(s)	836
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	5 cut(s)	139, 197, 443, 769, 1021
Mva1269I	GAATGC	1 cut(s)	1280
MvaI	CCWGG	5 cut(s)	139, 197, 443, 769, 1021
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	1763
NaeI	GCCGGC	1 cut(s)	223
NdeII	GATC	8 cut(s)	333, 700, 1162, 1944, 1989, 2080, 2116, 2249
NgoMIV	GCCGGC	1 cut(s)	221
NheI	GCTAGC	2 cut(s)	626, 1096
NlaIV	GGNNCC	3 cut(s)	404, 1633, 2328
NmeAIII	GCCGAG	2 cut(s)	265, 700
NmuCI	GTSAC	3 cut(s)	427, 902, 1120
NsiI	ATGCAT	1 cut(s)	809
NspI	RCATGY	3 cut(s)	543, 646, 1252
NspV	TTCGAA	1 cut(s)	164
OliI	CACNNNNGTG	1 cut(s)	2039
PacI	TTAATTAA	1 cut(s)	1548
PasI	CCCWGGG	1 cut(s)	196
PauI	GCGCGC	1 cut(s)	11
PciI	ACATGT	2 cut(s)	642, 1248
PcsI	WCGNNNNNNNCGW	1 cut(s)	1971
PctI	GAATGC	1 cut(s)	1280
PdiI	GCCGGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	4 cut(s)	668, 764, 2102, 2184
PflMI	CCANNNNNTGG	1 cut(s)	1474
PfoI	TCCNGGA	3 cut(s)	441, 767, 1019
PkrI	GCNGC	2 cut(s)	436, 2056
PleI	GAGTC	7 cut(s)	200, 294, 412, 697, 1217, 1421, 1588
PpsI	GAGTC	7 cut(s)	200, 294, 412, 697, 1217, 1421, 1588
Ppu21I	YACGTR	1 cut(s)	1366
PscI	ACATGT	2 cut(s)	642, 1248
PshBI	ATTAAT	2 cut(s)	1241, 1544
Psp6I	CCWGG	5 cut(s)	137, 195, 441, 767, 1019
PspFI	CCCAGC	2 cut(s)	295, 2024
PspGI	CCWGG	5 cut(s)	137, 195, 441, 767, 1019
PspN4I	GGNNCC	3 cut(s)	404, 1633, 2328
PspPI	GGNCC	2 cut(s)	811, 1632
PsuI	RGATCY	1 cut(s)	2249
PteI	GCGCGC	1 cut(s)	11
RsaI	GTAC	6 cut(s)	344, 550, 919, 950, 1307, 2433
RsaNI	GTAC	6 cut(s)	343, 549, 918, 949, 1306, 2432
RseI	CAYNNNNRTG	4 cut(s)	585, 1527, 1808, 2039
SatI	GCNGC	2 cut(s)	435, 2055
Sau3AI	GATC	8 cut(s)	333, 700, 1162, 1944, 1989, 2080, 2116, 2249
Sau96I	GGNCC	2 cut(s)	811, 1632
SchI	GAGTC	7 cut(s)	200, 294, 412, 698, 1218, 1422, 1589
ScrFI	CCNGG	5 cut(s)	139, 197, 443, 769, 1021
SduI	GDGCHC	4 cut(s)	592, 848, 1759, 1960
SfaNI	GCATC	8 cut(s)	294, 579, 1186, 1334, 1663, 1843, 2329, 2383
SfcI	CTRYAG	1 cut(s)	2465
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	2 cut(s)	811, 1632
SmiMI	CAYNNNNRTG	4 cut(s)	585, 1527, 1808, 2039
SmlI	CTYRAG	4 cut(s)	374, 499, 533, 836
SmoI	CTYRAG	4 cut(s)	374, 499, 533, 836
SsiI	CCGC	4 cut(s)	283, 672, 1869, 2262
SspMI	CTAG	6 cut(s)	306, 525, 627, 1097, 1257, 2199
StyD4I	CCNGG	5 cut(s)	137, 195, 441, 767, 1019
StyI	CCWWGG	2 cut(s)	1171, 2231
TaaI	ACNGT	5 cut(s)	161, 617, 1305, 1967, 2289
TaiI	ACGT	2 cut(s)	344, 1368
TaqI	TCGA	4 cut(s)	164, 347, 1587, 1974
TaqII	GACCGA	1 cut(s)	713
TatI	WGTACW	3 cut(s)	948, 1305, 2431
TfiI	GAWTC	4 cut(s)	668, 764, 2102, 2184
TscAI	CASTG	3 cut(s)	580, 1033, 2052
TseFI	GTSAC	3 cut(s)	427, 902, 1120
TseI	GCWGC	2 cut(s)	434, 2054
Tsp45I	GTSAC	3 cut(s)	427, 902, 1120
TspGWI	ACGGA	3 cut(s)	566, 887, 956
TspRI	CASTG	3 cut(s)	580, 1033, 2052
Van91I	CCANNNNNTGG	1 cut(s)	1474
Vha464I	CTTAAG	1 cut(s)	836
VpaK11BI	GGWCC	2 cut(s)	811, 1632
VspI	ATTAAT	2 cut(s)	1241, 1544
XapI	RAATTY	8 cut(s)	859, 911, 1421, 1485, 1623, 1682, 1724, 2133
XbaI	TCTAGA	1 cut(s)	1256
XceI	RCATGY	3 cut(s)	543, 646, 1252
XmiI	GTMKAC	2 cut(s)	692, 740
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	6 cut(s)	306, 525, 627, 1097, 1257, 2199
Zsp2I	ATGCAT	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.