Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007602

Physical Location & Seq

Genomic Coordinates Forward (+)

16413459 .. 16416711

Gene Structure 3253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGGCAGCAATCGTTGATCTACAGCTTCGTGGCGCGCGGGACCGTGATCCTCGCCGAGTTCACGGAATTCACCGGCAACTTCACCGGCATAGCTGCTCAGTGCCTCCAGAAGCTTCCCGCCACTAACAACAAGTTCACCTACAACTGCGACGGCCACACCTTCAACTACCTCGTCGATAATGGCTTCACATACTGTGTAGTTGCAGTTGAGGCTCTTGGTCGACAAGTTCCTATTGCCTTCCTCGAGCGAATCAAGGAAGATTTTACCAATAGATATGGTGGAGGAAAAGCTGCGACAGCAGTTGCAAATAGTCTGAACAAGGAATTTGGGTCTAAGCTGAAGGAGCATATGCAATATTGTGTGGATCACCCCGAGGAGATCAGCAAACTTGCTAAAGTAAAAGCTCAGGTTTCAGAAGTGAAAGGAGTTATGATGGAAAATATTGAAAAGGTTCTTGATCGTGGGGAAAAGATAGAACTTCTGGTGGACAAAACTGAGAACCTTCGCTCACAGGCACAAGATTTCAGGCAGCAAGGAACCCAGATGAGGAGGAAGATGTGGTTTCAGAACATGAAGATCAAGCTGATAGTTTTGGGAATCTTAATCGCCTTGATTCTCATCATTGTCCTATCTGTTTGCAATGGATTCAAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

220

Amino Acids

24.65

Weight (kDa)

8.84

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 111	4.1e-22	Regulated-SNARE-like domain
Synaptobrevin	PF00957	130 - 210	1.9e-30	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33110
fragaria_vesca	FvH4_2g19280 FvH4_3g12050
malus_domestica	MD05G1177800.v1.1 MD10G1166000.v1.1
prunus_persica	Prupe.8G204500_v2.0.a1 Prupe.8G204500_v2.0.a1
pyrus_communis	pycom05g16420 pycom10g14320
rosa_chinensis	RchiOBHm_Chr6g0285071
rosa_laevigata	RLG00000012680
rosa_multiflora	Rmu_sc0002478.1_g000007 Rmu_sc0002535.1_g000048
rosa_roxburghii	Rroxscaffold_7G00183760 Rroxscaffold_7G00184050
rosa_rugosa	Rorug05G0053700 Rorug06G0170400 Rorug06G0170400 Rorug06G0170500
rosa_samantha	Rh5CG154700 Rh5DG143200 Rh6AG282200 Rh6BG282700
rosa_wichuraiana	Rw6G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	2 cut(s)	37, 39
AciI	CCGC	2 cut(s)	39, 120
AclWI	GGATC	2 cut(s)	43, 375
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	68, 326
AcuI	CTGAAG	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	3 cut(s)	166, 449, 652
AluBI	AGCT	7 cut(s)	27, 95, 115, 293, 340, 407, 586
AluI	AGCT	7 cut(s)	27, 95, 115, 293, 340, 407, 586
AlwI	GGATC	2 cut(s)	43, 375
Ama87I	CYCGRG	2 cut(s)	245, 374
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	7, 95, 293, 532
ApoI	RAATTY	2 cut(s)	68, 326
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	2 cut(s)	37, 39
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	4 cut(s)	64, 76, 130, 362
AvaI	CYCGRG	2 cut(s)	245, 374
AvaII	GGWCC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	19, 82, 280, 544
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	1 cut(s)	169
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	4 cut(s)	8, 96, 294, 533
BlsI	GCNGC	4 cut(s)	9, 97, 295, 534
Bme18I	GGWCC	1 cut(s)	42
BmeT110I	CYCGRG	2 cut(s)	245, 374
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	2 cut(s)	43, 541
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse118I	RCCGGY	2 cut(s)	74, 86
Bse3DI	GCAATG	1 cut(s)	649
Bse8I	GATNNNNATC	1 cut(s)	620
BseDI	CCNNGG	1 cut(s)	375
BseJI	GATNNNNATC	1 cut(s)	620
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	3 cut(s)	113, 422, 489
BsePI	GCGCGC	1 cut(s)	35
BseRI	GAGGAG	2 cut(s)	392, 565
BseXI	GCAGC	4 cut(s)	19, 82, 280, 544
Bsh1236I	CGCG	2 cut(s)	37, 39
BshFI	GGCC	1 cut(s)	156
BsiHKCI	CYCGRG	2 cut(s)	245, 374
BsiSI	CCGG	2 cut(s)	75, 87
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	156
BsoBI	CYCGRG	2 cut(s)	245, 374
Bsp143I	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
BspACI	CCGC	2 cut(s)	39, 120
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	3 cut(s)	112, 421, 490
BspFNI	CGCG	2 cut(s)	37, 39
BspLI	GGNNCC	2 cut(s)	43, 541
BspPI	GGATC	2 cut(s)	43, 375
BsrDI	GCAATG	1 cut(s)	649
BsrFI	RCCGGY	2 cut(s)	74, 86
BssAI	RCCGGY	2 cut(s)	74, 86
BssECI	CCNNGG	1 cut(s)	375
BssHII	GCGCGC	1 cut(s)	35
BssMI	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
Bst4CI	ACNGT	2 cut(s)	46, 197
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	4 cut(s)	99, 336, 408, 498
BstFNI	CGCG	2 cut(s)	37, 39
BstHHI	GCGC	2 cut(s)	37, 39
BstKTI	GATC	6 cut(s)	21, 51, 370, 384, 463, 582
BstMBI	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 299, 346
BstSFI	CTRYAG	1 cut(s)	22
BstUI	CGCG	2 cut(s)	37, 39
BstV1I	GCAGC	4 cut(s)	19, 82, 280, 544
BsuRI	GGCC	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	2 cut(s)	37, 39
Cfr10I	RCCGGY	2 cut(s)	74, 86
Cfr13I	GGNCC	1 cut(s)	42
CviAII	CATG	1 cut(s)	574
DdeI	CTNAG	4 cut(s)	99, 336, 408, 498
DpnI	GATC	6 cut(s)	20, 50, 369, 383, 462, 581
DpnII	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
EaeI	YGGCCR	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	2 cut(s)	245, 374
EcoRI	GAATTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	577
FaiI	YATR	7 cut(s)	92, 193, 279, 351, 353, 434, 575
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	573
FauI	CCCGC	2 cut(s)	32, 127
FauNDI	CATATG	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	4 cut(s)	8, 96, 294, 533
Fsp4HI	GCNGC	4 cut(s)	8, 96, 294, 533
GlaI	GCGC	2 cut(s)	36, 38
GluI	GCNGC	4 cut(s)	8, 96, 294, 533
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	2 cut(s)	75, 87
HhaI	GCGC	2 cut(s)	37, 39
Hin1II	CATG	1 cut(s)	577
Hin6I	GCGC	2 cut(s)	35, 37
HinP1I	GCGC	2 cut(s)	35, 37
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	4 cut(s)	252, 600, 616, 648
HpaII	CCGG	2 cut(s)	75, 87
HphI	GGTGA	4 cut(s)	64, 76, 130, 362
Hpy166II	GTNNAC	4 cut(s)	63, 138, 224, 490
Hpy188I	TCNGA	3 cut(s)	318, 418, 570
Hpy188III	TCNNGA	2 cut(s)	109, 458
Hpy8I	GTNNAC	4 cut(s)	63, 138, 224, 490
Hpy99I	CGWCG	2 cut(s)	155, 179
HpyAV	CCTTC	4 cut(s)	172, 250, 337, 515
HpyCH4III	ACNGT	2 cut(s)	46, 197
HpyCH4V	TGCA	4 cut(s)	206, 308, 355, 642
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 299, 346
HpyF3I	CTNAG	4 cut(s)	99, 336, 408, 498
Hsp92II	CATG	1 cut(s)	577
HspAI	GCGC	2 cut(s)	35, 37
Kzo9I	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	8 cut(s)	88, 100, 122, 395, 470, 500, 514, 557
Lsp1109I	GCAGC	4 cut(s)	19, 82, 280, 544
MalI	GATC	6 cut(s)	20, 50, 369, 383, 462, 581
MboI	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
MboII	GAAGA	3 cut(s)	272, 568, 589
MluCI	AATT	2 cut(s)	68, 326
MnlI	CCTC	9 cut(s)	62, 116, 182, 205, 254, 278, 370, 543, 546
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	1 cut(s)	605
MspI	CCGG	2 cut(s)	75, 87
MvnI	CGCG	2 cut(s)	37, 39
MwoI	GCNNNNNNNGC	3 cut(s)	212, 299, 346
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
NlaIII	CATG	1 cut(s)	577
NlaIV	GGNNCC	2 cut(s)	43, 541
NmeAIII	GCCGAG	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	245
PauI	GCGCGC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	4 cut(s)	252, 600, 616, 648
PkrI	GCNGC	4 cut(s)	9, 97, 295, 534
PspN4I	GGNNCC	2 cut(s)	43, 541
PspPI	GGNCC	1 cut(s)	42
PspXI	VCTCGAGB	1 cut(s)	245
PteI	GCGCGC	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	4 cut(s)	8, 96, 294, 533
Sau3AI	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
Sau96I	GGNCC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	22
Sfr274I	CTCGAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	42
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	68, 326
SsiI	CCGC	2 cut(s)	39, 120
SspI	AATATT	2 cut(s)	359, 445
TaaI	ACNGT	2 cut(s)	46, 197
TaqI	TCGA	3 cut(s)	177, 223, 246
TasI	AATT	2 cut(s)	68, 326
TfiI	GAWTC	4 cut(s)	252, 600, 616, 648
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	4 cut(s)	7, 95, 293, 532
TspDTI	ATGAA	1 cut(s)	590
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	42
XapI	RAATTY	2 cut(s)	68, 326
XhoI	CTCGAG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.