Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007602

Physical Location & Seq

Genomic Coordinates Forward (+)

50527313 .. 50530676

Gene Structure 3364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG282700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGGCAGCAGTCGTTGATCTACAGCTTCGTGGCGCGTGGGACGGTGATTCTCGCCGAGTTCACCGAATTCACCGGAAACTTCACCAGCATAGCTGCTCAGTGCCTCCAGAAGCTTCCCGCCACTAACAACAAGTTCACCTACAACTGCGACGGCCACACCTTCAACTACCTCGTCGATAATGGCTTCACGTACTGTGTAGTTGCAGTTGAGGCTCTTGGTCGACAAGTTCCTATTGCCTTCCTTGAGCGAATCAAGGAGGATTTTACCAATAGATATGGTGGAGGAAAAGCTGCAACGGCAGTTGCAAATAGTCTGAACAAGGAATTTGGGCCCAAGCTGAAGGAGCATATGCAATATTGTGTGGATCACCCCGAGGAGATCAGCAAACTTGCTAAAGTGAAAGCTCAGGTCTCCGAAGTCAAAGGAGTTATGATGGAAAATATTGAGAAGGTAAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

154

Amino Acids

17.15

Weight (kDa)

7.65

Isoelectric Point (pI)

24.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 111	1.8e-22	Regulated-SNARE-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33110
fragaria_vesca	FvH4_2g19280 FvH4_3g12050
malus_domestica	MD05G1177800.v1.1 MD10G1166000.v1.1
prunus_persica	Prupe.8G204500_v2.0.a1 Prupe.8G204500_v2.0.a1
pyrus_communis	pycom05g16420 pycom10g14320
rosa_chinensis	RchiOBHm_Chr6g0285071
rosa_laevigata	RLG00000012680
rosa_multiflora	Rmu_sc0002478.1_g000007 Rmu_sc0002535.1_g000048
rosa_roxburghii	Rroxscaffold_7G00183760 Rroxscaffold_7G00184050
rosa_rugosa	Rorug05G0053700 Rorug06G0170400 Rorug06G0170400 Rorug06G0170500
rosa_samantha	Rh5CG154700 Rh5DG143200 Rh6AG282200 Rh6BG282700
rosa_wichuraiana	Rw6G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	1 cut(s)	37
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	68, 326
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	6 cut(s)	27, 95, 115, 293, 340, 407
AluI	AGCT	6 cut(s)	27, 95, 115, 293, 340, 407
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	375
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	154, 332
ApaI	GGGCCC	1 cut(s)	336
ApeKI	GCWGC	3 cut(s)	7, 95, 293
ApoI	RAATTY	2 cut(s)	68, 326
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	332, 333
AsuHPI	GGTGA	6 cut(s)	55, 58, 64, 76, 130, 362
AvaI	CYCGRG	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	336
BbvI	GCAGC	3 cut(s)	19, 82, 280
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	2 cut(s)	169, 315
BcoDI	GTCTC	1 cut(s)	418
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	3 cut(s)	8, 96, 294
BlsI	GCNGC	3 cut(s)	9, 97, 295
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	332, 333
BmiI	GGNNCC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	113, 422
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	3 cut(s)	19, 82, 280
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	2 cut(s)	156, 334
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	156, 334
Bso31I	GGTCTC	1 cut(s)	418
BsoBI	CYCGRG	1 cut(s)	374
Bsp120I	GGGCCC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	18, 367, 381
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	2 cut(s)	156, 334
BspCNI	CTCAG	2 cut(s)	112, 421
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	3 cut(s)	18, 367, 381
Bst4CI	ACNGT	2 cut(s)	46, 197
BstBAI	YACGTR	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	99, 408
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	3 cut(s)	21, 370, 384
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	3 cut(s)	18, 367, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 299, 346
BstSFI	CTRYAG	1 cut(s)	22
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	19, 82, 280
BsuRI	GGCC	2 cut(s)	156, 334
BtsIMutI	CAGTG	1 cut(s)	107
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	332, 333
Csp6I	GTAC	1 cut(s)	193
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	99, 408
DpnI	GATC	3 cut(s)	20, 369, 383
DpnII	GATC	3 cut(s)	18, 367, 381
EaeI	YGGCCR	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	336
FaiI	YATR	5 cut(s)	92, 279, 351, 353, 434
FaqI	GGGAC	1 cut(s)	55
FauI	CCCGC	1 cut(s)	127
FauNDI	CATATG	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	8, 96, 294
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	3 cut(s)	8, 96, 294
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	3 cut(s)	8, 96, 294
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	156, 334
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	49, 252
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	6 cut(s)	55, 58, 64, 76, 130, 362
Hpy166II	GTNNAC	3 cut(s)	63, 138, 224
Hpy188I	TCNGA	2 cut(s)	318, 418
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	3 cut(s)	63, 138, 224
Hpy99I	CGWCG	2 cut(s)	155, 179
HpyAV	CCTTC	4 cut(s)	172, 250, 337, 445
HpyCH4III	ACNGT	2 cut(s)	46, 197
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	206, 296, 308, 355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 299, 346
HpyF3I	CTNAG	2 cut(s)	99, 408
HpySE526I	ACGT	1 cut(s)	191
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	3 cut(s)	18, 367, 381
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	4 cut(s)	88, 100, 122, 395
Lsp1109I	GCAGC	3 cut(s)	19, 82, 280
MaeII	ACGT	1 cut(s)	191
MalI	GATC	3 cut(s)	20, 369, 383
MboI	GATC	3 cut(s)	18, 367, 381
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	2 cut(s)	68, 326
MnlI	CCTC	6 cut(s)	116, 182, 205, 253, 278, 370
MspI	CCGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	3 cut(s)	212, 299, 346
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	3 cut(s)	18, 367, 381
NlaIV	GGNNCC	1 cut(s)	334
NmeAIII	GCCGAG	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	49, 252
PkrI	GCNGC	3 cut(s)	9, 97, 295
Ppu21I	YACGTR	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	334
PspOMI	GGGCCC	1 cut(s)	332
PspPI	GGNCC	2 cut(s)	332, 333
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SalI	GTCGAC	1 cut(s)	222
SatI	GCNGC	3 cut(s)	8, 96, 294
Sau3AI	GATC	3 cut(s)	18, 367, 381
Sau96I	GGNCC	2 cut(s)	332, 333
SduI	GDGCHC	1 cut(s)	336
SfcI	CTRYAG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	68, 326
SsiI	CCGC	1 cut(s)	120
SspI	AATATT	2 cut(s)	359, 445
TaaI	ACNGT	2 cut(s)	46, 197
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	177, 223
TasI	AATT	2 cut(s)	68, 326
TfiI	GAWTC	2 cut(s)	49, 252
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	3 cut(s)	7, 95, 293
TspRI	CASTG	1 cut(s)	107
XapI	RAATTY	2 cut(s)	68, 326
XmiI	GTMKAC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.