Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007602

Physical Location & Seq

Genomic Coordinates Forward (+)

19180571 .. 19184016

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G204500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGGCAGCAATCGTTGATCTACAGCTTCGTGGCGCGTGGCACGGTGATTCTCGCAGAGTACACGGAATTCACTGGAAACTTCACCAGCATAGCTTCGCAGTGCCTCCAGAAACTACCTGCTACTAACAACAAGTTCACGTACAACTGCGACGGCCACACCTTCAACTACCTCGTCGATAATGGCTTCACATACTGTGTAGTTGCAGTTGAGGCTATTGGTAGACAAATTCCTATTGCTTTCCTTGAGCGAATCAAGGAGGATTTTACCGGTAGATATGGTGGAGGAAAAGCTGCAACAGCAGTAGCAAATAGTCTGAACAAGGAATTCGGGTCCAAACTGAAGGAGCATATGCAATATTGTGTTGATCACCCTGAGGAGATCAGCAAGCTTGCTAAAGTGAAAGCTCAGGTCTCAGAAGTCAAAGGAGTTATGATGGAAAATATTGAAAAGGTTCTTGATCGTGGGGAGAAAATAGAGCTTCTGGTGGATAAAACAGAAAACCTTCGCTCACAGGCACAAGATTTCAGGCAGCAAGGAACCCAGATGAGAAGGAAGATGTGGCTGCAGAACATGAAGATCAAGCTGATCGTTTTGGGAATCTTAATTGCTTTGATTCTCATCATTGTTCTATCTGTTTGCAATGGGTTCAAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

220

Amino Acids

24.63

Weight (kDa)

8.83

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33110
fragaria_vesca	FvH4_2g19280 FvH4_3g12050
malus_domestica	MD05G1177800.v1.1 MD10G1166000.v1.1
prunus_persica	Prupe.8G204500_v2.0.a1 Prupe.8G204500_v2.0.a1
pyrus_communis	pycom05g16420 pycom10g14320
rosa_chinensis	RchiOBHm_Chr6g0285071
rosa_laevigata	RLG00000012680
rosa_multiflora	Rmu_sc0002478.1_g000007 Rmu_sc0002535.1_g000048
rosa_roxburghii	Rroxscaffold_7G00183760 Rroxscaffold_7G00184050
rosa_rugosa	Rorug05G0053700 Rorug06G0170400 Rorug06G0170400 Rorug06G0170500
rosa_samantha	Rh5CG154700 Rh5DG143200 Rh6AG282200 Rh6BG282700
rosa_wichuraiana	Rw6G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	3 cut(s)	68, 228, 326
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	2 cut(s)	62, 143
AgeI	ACCGGT	1 cut(s)	269
AgsI	TTSAA	3 cut(s)	166, 449, 652
AluBI	AGCT	7 cut(s)	27, 95, 293, 391, 407, 481, 586
AluI	AGCT	7 cut(s)	27, 95, 293, 391, 407, 481, 586
Alw26I	GTCTC	1 cut(s)	418
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	7, 293, 532, 565
ApoI	RAATTY	3 cut(s)	68, 228, 326
AsiGI	ACCGGT	1 cut(s)	269
Asp700I	GAANNNNTTC	2 cut(s)	453, 504
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	3 cut(s)	58, 76, 362
AvaII	GGWCC	1 cut(s)	333
AxyI	CCTNAGG	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	19, 280, 544, 552
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	418
BfmI	CTRYAG	2 cut(s)	22, 566
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	4 cut(s)	8, 294, 533, 566
BlsI	GCNGC	4 cut(s)	9, 295, 534, 567
Bme18I	GGWCC	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	334, 541
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	141
BsaBI	GATNNNNATC	1 cut(s)	620
BsaI	GGTCTC	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	269
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	79
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	649
Bse8I	GATNNNNATC	1 cut(s)	620
BseJI	GATNNNNATC	1 cut(s)	620
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	3 cut(s)	366, 422, 429
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	4 cut(s)	19, 280, 544, 552
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	156
BshTI	ACCGGT	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	270
BsmAI	GTCTC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	418
Bsp143I	GATC	6 cut(s)	18, 367, 381, 460, 579, 588
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	3 cut(s)	367, 421, 428
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	334, 541
BspMAI	CTGCAG	1 cut(s)	570
BspMI	ACCTGC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	649
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	269
BssMI	GATC	6 cut(s)	18, 367, 381, 460, 579, 588
Bst4CI	ACNGT	2 cut(s)	46, 197
BstBAI	YACGTR	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	389, 393
BstDEI	CTNAG	3 cut(s)	375, 408, 415
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	6 cut(s)	21, 370, 384, 463, 582, 591
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	6 cut(s)	18, 367, 381, 460, 579, 588
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 299
BstSFI	CTRYAG	2 cut(s)	22, 566
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	4 cut(s)	19, 280, 544, 552
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	2 cut(s)	72, 107
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	389, 393
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	61, 142
CspAI	ACCGGT	1 cut(s)	269
CviAII	CATG	1 cut(s)	574
CviQI	GTAC	2 cut(s)	61, 142
DdeI	CTNAG	3 cut(s)	375, 408, 415
DpnI	GATC	6 cut(s)	20, 369, 383, 462, 581, 590
DpnII	GATC	6 cut(s)	18, 367, 381, 460, 579, 588
EaeI	YGGCCR	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	362
Eco81I	CCTNAGG	1 cut(s)	375
EcoRI	GAATTC	2 cut(s)	68, 326
FaeI	CATG	1 cut(s)	577
FaiI	YATR	7 cut(s)	92, 193, 279, 351, 353, 434, 575
FatI	CATG	1 cut(s)	573
FauNDI	CATATG	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	4 cut(s)	8, 294, 533, 566
Fsp4HI	GCNGC	4 cut(s)	8, 294, 533, 566
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	4 cut(s)	8, 294, 533, 566
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	1 cut(s)	270
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	577
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	4 cut(s)	49, 252, 600, 616
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	3 cut(s)	58, 76, 362
Hpy166II	GTNNAC	3 cut(s)	63, 138, 224
Hpy188I	TCNGA	2 cut(s)	318, 418
Hpy188III	TCNNGA	2 cut(s)	109, 458
Hpy8I	GTNNAC	3 cut(s)	63, 138, 224
Hpy99I	CGWCG	2 cut(s)	155, 179
HpyAV	CCTTC	4 cut(s)	172, 337, 515, 546
HpyCH4III	ACNGT	2 cut(s)	46, 197
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	5 cut(s)	206, 296, 355, 568, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 299
HpyF3I	CTNAG	3 cut(s)	375, 408, 415
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	577
HspAI	GCGC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	6 cut(s)	18, 367, 381, 460, 579, 588
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	4 cut(s)	19, 280, 544, 552
MaeII	ACGT	1 cut(s)	140
MalI	GATC	6 cut(s)	20, 369, 383, 462, 581, 590
MboI	GATC	6 cut(s)	18, 367, 381, 460, 579, 588
MboII	GAAGA	2 cut(s)	568, 589
MluCI	AATT	4 cut(s)	68, 228, 326, 606
MnlI	CCTC	6 cut(s)	116, 182, 205, 253, 278, 370
MroXI	GAANNNNTTC	2 cut(s)	453, 504
MseI	TTAA	1 cut(s)	605
MspI	CCGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	2 cut(s)	212, 299
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	6 cut(s)	18, 367, 381, 460, 579, 588
NlaIII	CATG	1 cut(s)	577
NlaIV	GGNNCC	2 cut(s)	334, 541
PdmI	GAANNNNTTC	2 cut(s)	453, 504
PfeI	GAWTC	4 cut(s)	49, 252, 600, 616
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	4 cut(s)	9, 295, 534, 567
Ppu21I	YACGTR	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	334, 541
PspPI	GGNCC	1 cut(s)	333
PstI	CTGCAG	1 cut(s)	570
RsaI	GTAC	2 cut(s)	62, 143
RsaNI	GTAC	2 cut(s)	61, 142
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	4 cut(s)	8, 294, 533, 566
Sau3AI	GATC	6 cut(s)	18, 367, 381, 460, 579, 588
Sau96I	GGNCC	1 cut(s)	333
SfcI	CTRYAG	2 cut(s)	22, 566
SinI	GGWCC	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	4 cut(s)	68, 228, 326, 606
SspI	AATATT	2 cut(s)	359, 445
TaaI	ACNGT	2 cut(s)	46, 197
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	177
TasI	AATT	4 cut(s)	68, 228, 326, 606
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	4 cut(s)	49, 252, 600, 616
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TscAI	CASTG	2 cut(s)	79, 107
TseI	GCWGC	4 cut(s)	7, 293, 532, 565
TspDTI	ATGAA	1 cut(s)	590
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	79, 107
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	3 cut(s)	68, 228, 326
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	2 cut(s)	453, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.