Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007602

Physical Location & Seq

Genomic Coordinates Forward (+)

19689286 .. 19692151

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGGCAGCAATCGTTGATCTACAGCTTCGTGGCGCGCGGCACGGTGATCCTCGCAGAGTACACGGAATTCACTGGAAACTTCACCAGCATAGCTTCCCAGTGCCTCCAGAAACTTCCGGCCACCAATAACAAGTTCACCTACAACTGCGACGGCCACACCTTCAACTACCTAGTCGATAATGGCTTCACATATTGTGTAGTTGCAGTTGAGGCTGTTGGTCGACAAGTTCCTATTGCCTTCCTTGAGCGAATCAAGGAGGATTTTACCGGTAGATATGGTGGGGGAAAAGCTGCAACAGCAGTTGCAAATAGCCTAAACAAGGAATTTGGGTCCAAACTGAAGGAGCACATGCAATACTGTGTGGATCATCCCGAGGAGATCAGCAAGCTTTCAAAAGTGAAAGCACAAGTCTCAGAAGTCAAAGGAGTTATGATGGAAAATATCGAAAAGGTTCTTGATCGTGGGGAGAAAATTGAACTTCTGGTTGATAAAACAGAGAACCTCCGCTCACAGGCACAAGATTTCAGGCAGCAGGGAACCCAGATGAGGAGGAAGATGTGGTTGCAGAACATGAAGATCAAGCTGATAGTTTTGGGAATCTTAATCGCTTTGATTCTCATCATCGTTCTATCCGTTTGCAATGGCTTCAAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

220

Amino Acids

24.62

Weight (kDa)

8.83

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33110
fragaria_vesca	FvH4_2g19280 FvH4_3g12050
malus_domestica	MD05G1177800.v1.1 MD10G1166000.v1.1
prunus_persica	Prupe.8G204500_v2.0.a1 Prupe.8G204500_v2.0.a1
pyrus_communis	pycom05g16420 pycom10g14320
rosa_chinensis	RchiOBHm_Chr6g0285071
rosa_laevigata	RLG00000012680
rosa_multiflora	Rmu_sc0002478.1_g000007 Rmu_sc0002535.1_g000048
rosa_roxburghii	Rroxscaffold_7G00183760 Rroxscaffold_7G00184050
rosa_rugosa	Rorug05G0053700 Rorug06G0170400 Rorug06G0170400 Rorug06G0170500
rosa_samantha	Rh5CG154700 Rh5DG143200 Rh6AG282200 Rh6BG282700
rosa_wichuraiana	Rw6G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	510
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	2 cut(s)	37, 39
AciI	CCGC	2 cut(s)	39, 508
AclWI	GGATC	2 cut(s)	43, 375
AcoI	YGGCCR	2 cut(s)	120, 154
AcsI	RAATTY	2 cut(s)	68, 326
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	322, 514, 549
AgeI	ACCGGT	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	166, 396, 479, 652
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	5 cut(s)	27, 95, 293, 391, 586
AluI	AGCT	5 cut(s)	27, 95, 293, 391, 586
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	2 cut(s)	43, 375
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	120, 154
ApeKI	GCWGC	3 cut(s)	7, 293, 532
ApoI	RAATTY	2 cut(s)	68, 326
AsiGI	ACCGGT	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	2 cut(s)	37, 39
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	3 cut(s)	58, 76, 130
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	19, 280, 544
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	4 cut(s)	8, 40, 294, 533
BlsI	GCNGC	4 cut(s)	9, 41, 295, 534
Bme18I	GGWCC	1 cut(s)	333
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	334, 541
BmrI	ACTGGG	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 514, 549
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	79, 100
Bse3DI	GCAATG	1 cut(s)	649
Bse8I	GATNNNNATC	1 cut(s)	620
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	620
BseLI	CCNNNNNNNGG	3 cut(s)	322, 514, 549
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	79, 100
BsePI	GCGCGC	1 cut(s)	35
BseRI	GAGGAG	2 cut(s)	392, 565
BseXI	GCAGC	3 cut(s)	19, 280, 544
Bsh1236I	CGCG	2 cut(s)	37, 39
BshFI	GGCC	2 cut(s)	122, 156
BshTI	ACCGGT	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	119, 270
BslI	CCNNNNNNNGG	3 cut(s)	322, 514, 549
BsmAI	GTCTC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	122, 156
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
BspACI	CCGC	2 cut(s)	39, 508
BspANI	GGCC	2 cut(s)	122, 156
BspCNI	CTCAG	1 cut(s)	428
BspFNI	CGCG	2 cut(s)	37, 39
BspLI	GGNNCC	2 cut(s)	334, 541
BspPI	GGATC	2 cut(s)	43, 375
BsrBI	CCGCTC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	649
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	79, 100
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	375
BssHII	GCGCGC	1 cut(s)	35
BssMI	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
Bst4CI	ACNGT	2 cut(s)	46, 362
BstC8I	GCNNGC	2 cut(s)	37, 389
BstDEI	CTNAG	1 cut(s)	415
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	2 cut(s)	37, 39
BstHHI	GCGC	2 cut(s)	37, 39
BstKTI	GATC	6 cut(s)	21, 51, 370, 384, 463, 582
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 299, 654
BstNSI	RCATGY	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	22
BstUI	CGCG	2 cut(s)	37, 39
BstV1I	GCAGC	3 cut(s)	19, 280, 544
BsuRI	GGCC	2 cut(s)	122, 156
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	2 cut(s)	72, 107
Cac8I	GCNNGC	2 cut(s)	37, 389
CfoI	GCGC	2 cut(s)	37, 39
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	61
CspAI	ACCGGT	1 cut(s)	269
CviAII	CATG	2 cut(s)	352, 574
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	415
DpnI	GATC	6 cut(s)	20, 50, 369, 383, 462, 581
DpnII	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
EaeI	YGGCCR	2 cut(s)	120, 154
Eco47I	GGWCC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	374
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	355, 577
FaiI	YATR	6 cut(s)	92, 193, 279, 353, 434, 575
FatI	CATG	2 cut(s)	351, 573
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	4 cut(s)	8, 40, 294, 533
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	4 cut(s)	8, 40, 294, 533
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	2 cut(s)	36, 38
GluI	GCNGC	4 cut(s)	8, 40, 294, 533
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	122, 156
HapII	CCGG	2 cut(s)	119, 270
HhaI	GCGC	2 cut(s)	37, 39
Hin1II	CATG	2 cut(s)	355, 577
Hin6I	GCGC	2 cut(s)	35, 37
HinP1I	GCGC	2 cut(s)	35, 37
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	3 cut(s)	252, 600, 616
HpaII	CCGG	2 cut(s)	119, 270
HphI	GGTGA	3 cut(s)	58, 76, 130
Hpy166II	GTNNAC	3 cut(s)	63, 138, 224
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	3 cut(s)	109, 374, 458
Hpy8I	GTNNAC	3 cut(s)	63, 138, 224
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	172, 250, 337
HpyCH4III	ACNGT	2 cut(s)	46, 362
HpyCH4V	TGCA	6 cut(s)	206, 296, 308, 355, 568, 642
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 299, 654
HpyF3I	CTNAG	1 cut(s)	415
Hsp92II	CATG	2 cut(s)	355, 577
HspAI	GCGC	2 cut(s)	35, 37
Kzo9I	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	3 cut(s)	19, 280, 544
MaeI	CTAG	1 cut(s)	173
MalI	GATC	6 cut(s)	20, 50, 369, 383, 462, 581
MbiI	CCGCTC	1 cut(s)	510
MboI	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
MboII	GAAGA	2 cut(s)	568, 589
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	3 cut(s)	68, 326, 474
MnlI	CCTC	8 cut(s)	62, 116, 205, 253, 370, 515, 543, 546
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	1 cut(s)	605
MspI	CCGG	2 cut(s)	119, 270
MvnI	CGCG	2 cut(s)	37, 39
MwoI	GCNNNNNNNGC	3 cut(s)	212, 299, 654
NdeII	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
NlaIII	CATG	2 cut(s)	355, 577
NlaIV	GGNNCC	2 cut(s)	334, 541
NspI	RCATGY	1 cut(s)	355
PauI	GCGCGC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	252, 600, 616
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	4 cut(s)	9, 41, 295, 534
PspN4I	GGNNCC	2 cut(s)	334, 541
PspPI	GGNCC	1 cut(s)	333
PteI	GCGCGC	1 cut(s)	35
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SalI	GTCGAC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	4 cut(s)	8, 40, 294, 533
Sau3AI	GATC	6 cut(s)	18, 48, 367, 381, 460, 579
Sau96I	GGNCC	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	3 cut(s)	68, 326, 474
SsiI	CCGC	2 cut(s)	39, 508
SspMI	CTAG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	46, 362
TaqI	TCGA	3 cut(s)	177, 223, 447
TasI	AATT	3 cut(s)	68, 326, 474
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	252, 600, 616
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TscAI	CASTG	2 cut(s)	79, 107
TseI	GCWGC	3 cut(s)	7, 293, 532
TspDTI	ATGAA	1 cut(s)	590
TspGWI	ACGGA	2 cut(s)	80, 625
TspRI	CASTG	2 cut(s)	79, 107
VpaK11BI	GGWCC	1 cut(s)	333
XagI	CCTNNNNNAGG	1 cut(s)	320
XapI	RAATTY	2 cut(s)	68, 326
XceI	RCATGY	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.