Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007602

Physical Location & Seq

Genomic Coordinates Reverse (-)

14678480 .. 14681581

Gene Structure 3102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG143200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGGCAGAAGTCGCTGATCTACGCGTTCGTGGCGCGAGGCACCGTGATTCTTGCCGAGTACACCGAATTCAGCGGCAATTTCAACTCCATAGCCTTCCAGTGCCTCCAGAAGCTTCCGGCCACCAACAACAAGTTCACCTACAACTGCGACGGCCACACCTTCAATTACCTCGTCGACAATGGCTACACATACTGTGTGGTGGCAGATGAATCAGTTGGAAGACAAGTGCCTATTGCTTTTCTGGAGCGTGCGAAGGATGATTTTGTTGCAAAATATGGTGGTGGCAAGGCCGCTACAGCTGCTGCCAACAGTCTTAACAAGGAATTTGGGTCAAAATTGAAGGAACATATGCAATACTGTGTTGATCATCCTGAAGAAATAAGCAAGCTTGCTAAGGTTAAGGCCCAGGTTTCAGAAGTTAAAGGTGTTATGATGGAGAACATTGAAAAGGTATTTCGCTTGGTTAATATGTATCAGTTGTCTTCATTAGATTGTTCACCACGGACGGGAAACACTATTATTTGCTCCAACTGCCTCTATTTATTTATTTTATTATTTTCTTTTCTAGCCAGTTGCTTTCTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

196

Amino Acids

21.84

Weight (kDa)

7.49

Isoelectric Point (pI)

25.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	34 - 111	5.8e-23	Regulated-SNARE-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33110
fragaria_vesca	FvH4_2g19280 FvH4_3g12050
malus_domestica	MD05G1177800.v1.1 MD10G1166000.v1.1
prunus_persica	Prupe.8G204500_v2.0.a1 Prupe.8G204500_v2.0.a1
pyrus_communis	pycom05g16420 pycom10g14320
rosa_chinensis	RchiOBHm_Chr6g0285071
rosa_laevigata	RLG00000012680
rosa_multiflora	Rmu_sc0002478.1_g000007 Rmu_sc0002535.1_g000048
rosa_roxburghii	Rroxscaffold_7G00183760 Rroxscaffold_7G00184050
rosa_rugosa	Rorug05G0053700 Rorug06G0170400 Rorug06G0170400 Rorug06G0170500
rosa_samantha	Rh5CG154700 Rh5DG143200 Rh6AG282200 Rh6BG282700
rosa_wichuraiana	Rw6G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	26, 37
AciI	CCGC	2 cut(s)	75, 294
AcoI	YGGCCR	2 cut(s)	120, 154
AcsI	RAATTY	2 cut(s)	68, 326
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	509
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	4 cut(s)	85, 166, 343, 449
AjnI	CCWGG	1 cut(s)	408
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	3 cut(s)	115, 302, 391
AluI	AGCT	3 cut(s)	115, 302, 391
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	4 cut(s)	120, 154, 291, 405
ApeKI	GCWGC	2 cut(s)	302, 305
ApoI	RAATTY	2 cut(s)	68, 326
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	2 cut(s)	130, 492
BanI	GGYRCC	1 cut(s)	41
BbsI	GAAGAC	2 cut(s)	229, 477
BbvI	GCAGC	2 cut(s)	289, 292
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	410
BclI	TGATCA	1 cut(s)	367
BfaI	CTAG	1 cut(s)	569
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	4 cut(s)	76, 294, 303, 306
BlsI	GCNGC	4 cut(s)	77, 295, 304, 307
Bme1390I	CCNGG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	410
BpiI	GAAGAC	2 cut(s)	229, 477
BpmI	CTGGAG	2 cut(s)	92, 266
Bpu10I	CCTNAGC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	408, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	2 cut(s)	100, 573
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	408, 503
BseGI	GGATG	2 cut(s)	265, 370
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseNI	ACTGG	2 cut(s)	100, 573
BseXI	GCAGC	2 cut(s)	289, 292
Bsh1236I	CGCG	2 cut(s)	26, 37
BshFI	GGCC	4 cut(s)	122, 156, 293, 407
BshNI	GGYRCC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	509
BsnI	GGCC	4 cut(s)	122, 156, 293, 407
Bsp143I	GATC	2 cut(s)	18, 367
BspACI	CCGC	2 cut(s)	75, 294
BspANI	GGCC	4 cut(s)	122, 156, 293, 407
BspFNI	CGCG	2 cut(s)	26, 37
BspLI	GGNNCC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	100, 573
BssECI	CCNNGG	2 cut(s)	408, 503
BssMI	GATC	2 cut(s)	18, 367
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	4 cut(s)	46, 197, 314, 362
BstC8I	GCNNGC	3 cut(s)	252, 389, 393
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	265, 370
BstFNI	CGCG	2 cut(s)	26, 37
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	21, 370
BstMBI	GATC	2 cut(s)	18, 367
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 32, 299, 302, 534
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	2 cut(s)	26, 37
BstV1I	GCAGC	2 cut(s)	289, 292
BstV2I	GAAGAC	2 cut(s)	229, 477
BsuRI	GGCC	4 cut(s)	122, 156, 293, 407
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	2 cut(s)	265, 370
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	3 cut(s)	252, 389, 393
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	61
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	2 cut(s)	20, 369
DpnII	GATC	2 cut(s)	18, 367
EaeI	YGGCCR	2 cut(s)	120, 154
Eco57I	CTGAAG	1 cut(s)	396
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	408
FaiI	YATR	7 cut(s)	92, 193, 279, 351, 353, 434, 473
FauNDI	CATATG	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	4 cut(s)	76, 294, 303, 306
FokI	GGATG	2 cut(s)	272, 357
Fsp4HI	GCNGC	4 cut(s)	76, 294, 303, 306
FspBI	CTAG	1 cut(s)	569
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	4 cut(s)	76, 294, 303, 306
GsuI	CTGGAG	2 cut(s)	92, 266
HaeIII	GGCC	4 cut(s)	122, 156, 293, 407
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	2 cut(s)	113, 389
HinfI	GANTC	2 cut(s)	49, 212
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	2 cut(s)	130, 492
Hpy166II	GTNNAC	4 cut(s)	63, 138, 178, 500
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	3 cut(s)	109, 245, 374
Hpy8I	GTNNAC	4 cut(s)	63, 138, 178, 500
Hpy99I	CGWCG	2 cut(s)	155, 179
HpyAV	CCTTC	4 cut(s)	106, 172, 250, 337
HpyCH4III	ACNGT	4 cut(s)	46, 197, 314, 362
HpyCH4V	TGCA	2 cut(s)	272, 355
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 32, 299, 302, 534
HpyF3I	CTNAG	1 cut(s)	396
HspAI	GCGC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	18, 367
LmnI	GCTCC	2 cut(s)	247, 533
LpnPI	CCDG	8 cut(s)	113, 122, 132, 230, 387, 395, 422, 586
Lsp1109I	GCAGC	2 cut(s)	289, 292
MaeI	CTAG	1 cut(s)	569
MalI	GATC	2 cut(s)	20, 369
MboI	GATC	2 cut(s)	18, 367
MboII	GAAGA	3 cut(s)	234, 389, 477
MluCI	AATT	5 cut(s)	68, 79, 166, 326, 338
MluI	ACGCGT	1 cut(s)	24
MmeI	TCCRAC	2 cut(s)	199, 555
MnlI	CCTC	4 cut(s)	32, 116, 182, 548
MseI	TTAA	5 cut(s)	318, 402, 423, 468, 589
MspA1I	CMGCKG	2 cut(s)	75, 302
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MvnI	CGCG	2 cut(s)	26, 37
MwoI	GCNNNNNNNGC	5 cut(s)	13, 32, 299, 302, 534
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	2 cut(s)	18, 367
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	49, 212
PkrI	GCNGC	4 cut(s)	77, 295, 304, 307
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	5 cut(s)	318, 402, 423, 468, 589
SatI	GCNGC	4 cut(s)	76, 294, 303, 306
Sau3AI	GATC	2 cut(s)	18, 367
Sau96I	GGNCC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	410
SfcI	CTRYAG	1 cut(s)	297
Sse9I	AATT	5 cut(s)	68, 79, 166, 326, 338
SsiI	CCGC	2 cut(s)	75, 294
SspMI	CTAG	1 cut(s)	569
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	4 cut(s)	46, 197, 314, 362
TaqI	TCGA	1 cut(s)	177
TasI	AATT	5 cut(s)	68, 79, 166, 326, 338
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	2 cut(s)	78, 296
TfiI	GAWTC	2 cut(s)	49, 212
Tru1I	TTAA	5 cut(s)	318, 402, 423, 468, 589
Tru9I	TTAA	5 cut(s)	318, 402, 423, 468, 589
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	2 cut(s)	302, 305
TspDTI	ATGAA	2 cut(s)	225, 477
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	1 cut(s)	107
XapI	RAATTY	2 cut(s)	68, 326
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.