Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007602

Physical Location & Seq

Genomic Coordinates Reverse (-)

21248878 .. 21251371

Gene Structure 2494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012680

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGGCAGCAGTCGTTGATCTACAGCTTCGTGGCGCGTGGGACGGTGATTCTCGCCGAGTTCACCGAATTCACCGGCAACTTCACCAGCATAGCTGCTCAGTGCCTCCAGAAGCTTCCCGCCACTAACAACAAGTTCACCTACAACTGCGACGGCCACACCTTCAACTACCTCGTCGATAATGGCTTCACGTACTGTGTAGTTGCAGTTGAGGCTCTTGGTCGACAAGTTCCTATTGCCTTCCTTGAGCGAATCAAGGAGGACTTTACCAATAGATATGGTGGAGGAAAAGCTGCAACAGCAGTTGCAAATAGTCTGAACAAGGAATTTGGGTCTAAGCTGAAGGAGCATATGCAATATTGTGTGGATCACCCCGAGGAGATCAGCAAACTTGCCAAAGTGAAAGCTCAGGTCTCGGAAGTGAAAGGAGTTATGATGGAAAATATTGAAAAGGTTCTTGATCGTGGGGAAAAGATAGAACTTCTGGTGGACAAAACAGAGAATCTTCGCTCACAGGCACAAGATTTCAGGCAGCAGGGAACCCAGATGAGGAGGAAGATGTGGTTGCAGAACATGAAGATCAAGCTGATAGTTTTGGGAATCTTAATCGCCTTGATTCTCATTATTGTTCTATCTGTTTGCAATGGTTTCAAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

220

Amino Acids

24.64

Weight (kDa)

8.84

Isoelectric Point (pI)

29.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 111	4.1e-22	Regulated-SNARE-like domain
Synaptobrevin	PF00957	130 - 210	2.4e-30	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33110
fragaria_vesca	FvH4_2g19280 FvH4_3g12050
malus_domestica	MD05G1177800.v1.1 MD10G1166000.v1.1
prunus_persica	Prupe.8G204500_v2.0.a1 Prupe.8G204500_v2.0.a1
pyrus_communis	pycom05g16420 pycom10g14320
rosa_chinensis	RchiOBHm_Chr6g0285071
rosa_laevigata	RLG00000012680
rosa_multiflora	Rmu_sc0002478.1_g000007 Rmu_sc0002535.1_g000048
rosa_roxburghii	Rroxscaffold_7G00183760 Rroxscaffold_7G00184050
rosa_rugosa	Rorug05G0053700 Rorug06G0170400 Rorug06G0170400 Rorug06G0170500
rosa_samantha	Rh5CG154700 Rh5DG143200 Rh6AG282200 Rh6BG282700
rosa_wichuraiana	Rw6G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	1 cut(s)	37
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	68, 326
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	3 cut(s)	166, 449, 652
AluBI	AGCT	7 cut(s)	27, 95, 115, 293, 340, 407, 586
AluI	AGCT	7 cut(s)	27, 95, 115, 293, 340, 407, 586
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	375
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	7, 95, 293, 532
ApoI	RAATTY	2 cut(s)	68, 326
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	37
AsuHPI	GGTGA	6 cut(s)	55, 58, 64, 76, 130, 362
AvaI	CYCGRG	1 cut(s)	374
BbvI	GCAGC	4 cut(s)	19, 82, 280, 544
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	418
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	4 cut(s)	8, 96, 294, 533
BlsI	GCNGC	4 cut(s)	9, 97, 295, 534
BmeT110I	CYCGRG	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse118I	RCCGGY	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	649
BseDI	CCNNGG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	2 cut(s)	113, 422
BseRI	GAGGAG	2 cut(s)	392, 565
BseXI	GCAGC	4 cut(s)	19, 82, 280, 544
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	418
BsoBI	CYCGRG	1 cut(s)	374
Bsp143I	GATC	5 cut(s)	18, 367, 381, 460, 579
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	112, 421
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	541
BspPI	GGATC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	649
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	5 cut(s)	18, 367, 381, 460, 579
Bst4CI	ACNGT	2 cut(s)	46, 197
BstBAI	YACGTR	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	99, 336, 408
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	5 cut(s)	21, 370, 384, 463, 582
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	5 cut(s)	18, 367, 381, 460, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 299, 346
BstSFI	CTRYAG	1 cut(s)	22
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	4 cut(s)	19, 82, 280, 544
BsuRI	GGCC	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	107
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	574
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	3 cut(s)	99, 336, 408
DpnI	GATC	5 cut(s)	20, 369, 383, 462, 581
DpnII	GATC	5 cut(s)	18, 367, 381, 460, 579
EaeI	YGGCCR	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	577
FaiI	YATR	6 cut(s)	92, 279, 351, 353, 434, 575
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	573
FauI	CCCGC	1 cut(s)	127
FauNDI	CATATG	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	4 cut(s)	8, 96, 294, 533
Fsp4HI	GCNGC	4 cut(s)	8, 96, 294, 533
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	4 cut(s)	8, 96, 294, 533
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	577
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	5 cut(s)	49, 252, 502, 600, 616
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	6 cut(s)	55, 58, 64, 76, 130, 362
Hpy166II	GTNNAC	4 cut(s)	63, 138, 224, 490
Hpy188I	TCNGA	2 cut(s)	318, 418
Hpy188III	TCNNGA	2 cut(s)	109, 458
Hpy8I	GTNNAC	4 cut(s)	63, 138, 224, 490
Hpy99I	CGWCG	2 cut(s)	155, 179
HpyAV	CCTTC	3 cut(s)	172, 250, 337
HpyCH4III	ACNGT	2 cut(s)	46, 197
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	6 cut(s)	206, 296, 308, 355, 568, 642
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 299, 346
HpyF3I	CTNAG	3 cut(s)	99, 336, 408
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	577
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	5 cut(s)	18, 367, 381, 460, 579
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	88, 100, 122, 395, 470, 500, 514, 521, 557
Lsp1109I	GCAGC	4 cut(s)	19, 82, 280, 544
MaeII	ACGT	1 cut(s)	191
MalI	GATC	5 cut(s)	20, 369, 383, 462, 581
MboI	GATC	5 cut(s)	18, 367, 381, 460, 579
MboII	GAAGA	3 cut(s)	497, 568, 589
MluCI	AATT	2 cut(s)	68, 326
MnlI	CCTC	8 cut(s)	116, 182, 205, 253, 278, 370, 543, 546
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	1 cut(s)	605
MspI	CCGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	3 cut(s)	212, 299, 346
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	5 cut(s)	18, 367, 381, 460, 579
NlaIII	CATG	1 cut(s)	577
NlaIV	GGNNCC	1 cut(s)	541
NmeAIII	GCCGAG	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	5 cut(s)	49, 252, 502, 600, 616
PkrI	GCNGC	4 cut(s)	9, 97, 295, 534
Ppu21I	YACGTR	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	541
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SalI	GTCGAC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	4 cut(s)	8, 96, 294, 533
Sau3AI	GATC	5 cut(s)	18, 367, 381, 460, 579
SfcI	CTRYAG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	68, 326
SsiI	CCGC	1 cut(s)	120
SspI	AATATT	2 cut(s)	359, 445
TaaI	ACNGT	2 cut(s)	46, 197
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	177, 223
TasI	AATT	2 cut(s)	68, 326
TfiI	GAWTC	5 cut(s)	49, 252, 502, 600, 616
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	4 cut(s)	7, 95, 293, 532
TspDTI	ATGAA	1 cut(s)	590
TspRI	CASTG	1 cut(s)	107
XapI	RAATTY	2 cut(s)	68, 326
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.