Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007602

Physical Location & Seq

Genomic Coordinates Reverse (-)

14041014 .. 14043389

Gene Structure 2376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGCAACAATCGTTGTTCTACAGTTTCATCGCTCGCGGCACCGTAATCCTCGTCGAGTTCACAGATTTCAAAGGCAATTTCACATCTGTCGCTGCTCAGTACCTTGAGAATCTTCCTTCCTCGAACAACAAGTTTACCTACAACTGCGATGGTCATACGTTCAACGACCTCGTCGAAAATGGATTCACCTATTGTGTTGTTGCAGTTGATTCTGCTGGGAGGGAGATTCCTATGGCTTTCTTGGAACGCGTGAAGGAGGATTTTTATAAGAGATATGGTGGTGAAAAGGCTGCAACTGATCAAGCAAATAGCTTGAATAAAGAATTTGGGTCGAATCTGAAAGAGCACATGCAGTATTGCATGGATCATCCTGATGAGATTAGCAACCTTGCTAAAGCTAAAGCTCAAGTGTCTGAAGTTAAAAGTTTAATGATGGAAAACATTGAGAAGGTTCTTGCCCGTGGTGTGATATGTGAGATGCTGGGTAGTTCAGAGTCACAGCCGCAAGCTTTCTATATAAAAAGAACTCAAATGAAAAGGAAGAAGTGGTTTCAGAACATGAAGATAAAACTCATTGTCCTTGCAATTATCATTGCCTTGATTCTCATCATCATCCTCTCGGTTTGTGGGGGATTCAACTGCGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009536 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0022402 GO:0022607 GO:0030054 GO:0031201 GO:0031410 GO:0031982 GO:0032506 GO:0032940 GO:0032991 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0055044 GO:0061024 GO:0061025 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

217

Amino Acids

24.49

Weight (kDa)

8.14

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	33 - 111	2.4e-19	Regulated-SNARE-like domain
Synaptobrevin	PF00957	131 - 206	6.4e-12	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33110
fragaria_vesca	FvH4_2g19280 FvH4_3g12050
malus_domestica	MD05G1177800.v1.1 MD10G1166000.v1.1
prunus_persica	Prupe.8G204500_v2.0.a1 Prupe.8G204500_v2.0.a1
pyrus_communis	pycom05g16420 pycom10g14320
rosa_chinensis	RchiOBHm_Chr6g0285071
rosa_laevigata	RLG00000012680
rosa_multiflora	Rmu_sc0002478.1_g000007 Rmu_sc0002535.1_g000048
rosa_roxburghii	Rroxscaffold_7G00183760 Rroxscaffold_7G00184050
rosa_rugosa	Rorug05G0053700 Rorug06G0170400 Rorug06G0170400 Rorug06G0170500
rosa_samantha	Rh5CG154700 Rh5DG143200 Rh6AG282200 Rh6BG282700
rosa_wichuraiana	Rw6G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	41
AccII	CGCG	2 cut(s)	39, 252
AciI	CCGC	3 cut(s)	39, 506, 645
AclWI	GGATC	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	4 cut(s)	73, 166, 319, 640
AluBI	AGCT	4 cut(s)	315, 401, 407, 512
AluI	AGCT	4 cut(s)	315, 401, 407, 512
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	95, 293
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	181, 296
BanI	GGYRCC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	82, 280
BccI	CCATC	2 cut(s)	146, 430
BclI	TGATCA	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	4 cut(s)	40, 96, 294, 506
BlsI	GCNGC	4 cut(s)	41, 97, 295, 507
BmiI	GGNNCC	1 cut(s)	43
BmsI	GCATC	1 cut(s)	471
BpuEI	CTTGAG	2 cut(s)	128, 393
BsaBI	GATNNNNATC	1 cut(s)	608
BsaJI	CCNNGG	1 cut(s)	463
Bse3DI	GCAATG	1 cut(s)	594
Bse8I	GATNNNNATC	1 cut(s)	608
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	2 cut(s)	370, 615
BseJI	GATNNNNATC	1 cut(s)	608
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	82, 280
BseYI	CCCAGC	2 cut(s)	218, 484
Bsh1236I	CGCG	2 cut(s)	39, 252
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	301, 367
BspACI	CCGC	3 cut(s)	39, 506, 645
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	2 cut(s)	39, 252
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	594
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	2 cut(s)	301, 367
Bst4CI	ACNGT	2 cut(s)	26, 46
BstC8I	GCNNGC	2 cut(s)	37, 510
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	2 cut(s)	370, 615
BstFNI	CGCG	2 cut(s)	39, 252
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	304, 370
BstMBI	GATC	2 cut(s)	301, 367
BstNSI	RCATGY	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	22
BstUI	CGCG	2 cut(s)	39, 252
BstV1I	GCAGC	2 cut(s)	82, 280
BtgI	CCRYGG	1 cut(s)	463
BtgZI	GCGATG	2 cut(s)	16, 165
BtsCI	GGATG	2 cut(s)	370, 615
Cac8I	GCNNGC	2 cut(s)	37, 510
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	3 cut(s)	352, 364, 562
CviJI	RGCY	7 cut(s)	239, 293, 315, 401, 407, 505, 512
CviKI_1	RGCY	7 cut(s)	239, 293, 315, 401, 407, 505, 512
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	2 cut(s)	303, 369
DpnII	GATC	2 cut(s)	301, 367
Eco57I	CTGAAG	1 cut(s)	438
FaeI	CATG	3 cut(s)	355, 367, 565
FatI	CATG	3 cut(s)	351, 363, 561
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	40, 96, 294, 506
FokI	GGATG	2 cut(s)	357, 602
Fsp4HI	GCNGC	4 cut(s)	40, 96, 294, 506
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	40, 96, 294, 506
GsaI	CCCAGC	2 cut(s)	222, 488
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	355, 367, 565
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	8 cut(s)	112, 186, 212, 229, 337, 497, 604, 636
HphI	GGTGA	2 cut(s)	181, 296
Hpy166II	GTNNAC	2 cut(s)	63, 138
Hpy188I	TCNGA	4 cut(s)	342, 418, 496, 558
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	2 cut(s)	63, 138
Hpy99I	CGWCG	2 cut(s)	59, 179
HpyAV	CCTTC	3 cut(s)	129, 250, 445
HpyCH4III	ACNGT	2 cut(s)	26, 46
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	5 cut(s)	206, 296, 355, 363, 587
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	3 cut(s)	355, 367, 565
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	301, 367
LpnPI	CCDG	3 cut(s)	204, 387, 470
Lsp1109I	GCAGC	2 cut(s)	82, 280
LweI	GCATC	1 cut(s)	471
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	2 cut(s)	303, 369
MboI	GATC	2 cut(s)	301, 367
MboII	GAAGA	3 cut(s)	107, 556, 577
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	3 cut(s)	79, 326, 588
MluI	ACGCGT	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	6 cut(s)	62, 133, 182, 216, 253, 629
MseI	TTAA	2 cut(s)	423, 431
MslI	CAYNNNNRTG	1 cut(s)	375
MvnI	CGCG	2 cut(s)	39, 252
NdeII	GATC	2 cut(s)	301, 367
NlaIII	CATG	3 cut(s)	355, 367, 565
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	498
NspI	RCATGY	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	7 cut(s)	112, 186, 212, 229, 337, 604, 636
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	41, 97, 295, 507
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PsiI	TTATAA	1 cut(s)	270
PspFI	CCCAGC	2 cut(s)	218, 484
PspN4I	GGNNCC	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	423, 431
SatI	GCNGC	4 cut(s)	40, 96, 294, 506
Sau3AI	GATC	2 cut(s)	301, 367
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	471
SfcI	CTRYAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	107, 408
SmoI	CTYRAG	2 cut(s)	107, 408
Sse9I	AATT	3 cut(s)	79, 326, 588
SsiI	CCGC	3 cut(s)	39, 506, 645
TaaI	ACNGT	2 cut(s)	26, 46
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	4 cut(s)	57, 125, 177, 335
TasI	AATT	3 cut(s)	79, 326, 588
TauI	GCSGC	2 cut(s)	42, 508
TfiI	GAWTC	7 cut(s)	112, 186, 212, 229, 337, 604, 636
Tru1I	TTAA	2 cut(s)	423, 431
Tru9I	TTAA	2 cut(s)	423, 431
TseFI	GTSAC	1 cut(s)	498
TseI	GCWGC	2 cut(s)	95, 293
Tsp45I	GTSAC	1 cut(s)	498
TspDTI	ATGAA	3 cut(s)	19, 551, 578
Tth111I	GACNNNGTC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.