Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0015165

Physical Location & Seq

Genomic Coordinates Forward (+)

20266698 .. 20269781

Gene Structure 3084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3084 bp

ATGACCGTGAGCACCACCGCCAAAGAAAAGCTGGTGGTGGAGGTGGTGGCGGCGCACAACCTCATGCCGAAAGACGGCGAAGGCTCCTCCTCCCCCTTCGTAGAAATCGAGTTCGAGAACCAGCGCCTCCGAACCCAAGTCAAATACAAAGACCTCAACCCTATCTGGAACGAAAAGCTCGTCTTCCACGTCAAAGACGCCGCCGACCTTCCCTACAGAACCATCGAAGCCAACGTTTTCAACGAGCGGCGGTCCAGCAGCAGCCGGAATTTCCTCGGAAAAGTCCGCGTTTCGGGCTCCAACATTCAGAAAGAAGGCGAAGAGGTCCCCCAGCTTTTCACTCTCGACAAAAGGAGCTTATTTTCTCACATCAGAGGAGAAATCAGCTTGAAGCTCTACCTTTCGACGAGGGAGGAGGTCAAGGAATCTGGGGGTAATGGAAATGGAACAGTCTCCTCCTCCTCTGTTTCTGCGTCTACTGTGTCGGGTTCCGGGTTTTCGAAGAAGAAGAACAAGCTTCAGGGGGGGAATTCGGCTATGGCAGTGAATCAGCAGCTGGTGCAGGAATCGAAGCCGACTCAGCAGAACCAGAACCACAACGGCGGGTTCAAGAATCAGGAGCAGCAAAATGCAGGTGAGATGATGATGATAAATAAGCCTGTTTTGATTAATCAAGGGCCTGGGATTGGTGTATCCGCCGCCGGCGACAGGGGGACTGGCGGAGGTAGGGGTGGGAGTGTGTACTCAAATGGGTTGGGCGAGTTTTCGCTTAAGGAGACTCGGCCGCAGCTCGGTGGTGAGTCTATGAAGAAGGACAAAACTAGCTCTACTTATGACCTTGTTGAGCAAATGCAGTATCTGTATGTGAGGGTTGTGAAAGCGAAAGATGTCTCGTTGTTTGGCGGCGGGGATTTGGTGGCGGAAGTGAAGTTAGGGAACTACAGAGGGGTTACAAAGAGGGTTGGTTTGAACAATGTTGAGTGGGGTCAGGTTTTCGCCTTTTCGAAGGAATGCATACAGTCATCAATGGTGGAGATTTTTGTGAAAGAGAGCAACAAAGATGATTTCTTGGGCCGTGTTTGGTTTGATTTGAATGAGGTTCCGAGGAGGGTTCCTCCGGATAGTCAGTTGGCTCCGCAGTGGTACAGAATGGAGGATAAGAAGGGGGACAAGTCGAAAGCAGGGGAGGTTATGCTTTCAATTTGGTTTGGGACTCAGGCTGATGAGGCATTTGCTGAGTCTTGGCATTCGAAGGCTGCCAATGTGAATTTTGACGGGCTTTGTTCGATTAAGTCCAAGGTTTATTTGTCCCCAAGGCTGTGGTATCTGAGAGTGTCGGTTATAGAAGCTCAAGACATTGTCCCTGGCGAGAAGGGGTCTGCAATGATGAGGTTTCCCGAGCTTTCCACGAAAGTTCAGGTGGGAAACCAGGTTTTGAGGACTAGAATTGCACAGCCTAGTAGTGTGAGGAGCCTCTCTAATCCTTTTTGGAATGAGGAGATGATGTTTGTGGTGGCTGAGCCAATAGAGGACTACTTATTGGTTGCTATTGAGGATAGGGTTGGGCCGGGGCGTGATGAGGTGGTGGGAAGAGTGCTACTTCCTGTGCAAGCAATAGAAAGGCGAACGGATGAAAAGCCCGTTGTTTCAAGATGGTTCAACCTTGACAACCACCATTTCGGCAATGGAGGAGCAGCAGAGTCCAAAATGATGACAAGGTTTGGTTCTAGAATCCATCTCCGGGTTTCACTTGATGGTGGTTATCATGTGCTAGATGAGGCCACAATGTACAGCAGTGATCTTAAGCCGACTGACAAGCGGCTGTGGAAGTCTCACATTGGTGTGCTTGAGATGGGGATTTTGGGCGCAACAGGGCTTATGCCAATGAAAATAAAAGAAGGCAAAGGCGGGTGTAGTGATGCCTATTGTGTTGCAAAGTATGGCCAAAAATGGGTTCGAACTCGCACCGTTGTAGAAAGCTTGTCCCCGAAATGGAACGAGCAGTACACTTGGGAGGTGTATGATCCCTGCACAGTTGTCACAATTGGGGTGTTTGATAACTCCCGGATTGACAAGAACTTGGCTAACAATCCAGGAGCTCGTGATTTGCGTATTGGGAAGGTTAGAATTCGCTTGTCTACGCTGGAATCTGATCGAGTTTATACTCATTCGTATCCCCTCATGATGCTGCACACTTCAGGGGTCAAGAAAATGGGTGAGCTTCATCTGGCTATTCGGTTTTCATGTGCCAATATGGCTAACATGCTGCACATGTACACAATGCCGCTGCTTCCAAAGATGCATTTTGTGAACCCTTTGAGTGTGAATCAGTTGGAGACTTTGAGGTACCAAGCGATGAATGTGGTGGCCTCTAGGCTTAGCCGGGCAGAGCCGCCATTGGGCAGAGAGGTGGTTGAATACATGCTTGATCACGATTCCCATATGTGGAGCATGAGAAAGAGCAAAGCCAACTTCTTTCGACTAATGAATGTTGTTTCAGGACTTGTTGCTATGGGAAGATGGGTGGAGTTGATCCGTAGTTGGAACCGCCCTGTTATCTCAGCTTTAGTTGTTGCACTTTTCCTCTTGCTGGTTGCATATCCAGACCTCATCATCCCAATGATTTTGCTCTACATGGCCTTAGTGGGACTTTGGCGTTATAGGTCTAGACCGCGCCAACCACCCCACATGGACACTCGCCTTTCCCACGCTGAGAGCGTCTATGCTGATGAATTGGATGAGGAATTCGATTCTTTTCCAACAAGCCGGAGCGCTGAGGTTGTTCGAATGAGGTATGACCGGCTAAGGAGCGTGGCGGGGAGGATTCAAACTGTTGTTGGTGACATGGCTACGCAAGGCGAGCGATTCCAAGCACTCCTGAGCTGGAGAGACCCAAGAGCCACGTTCTTGTTTGTGATCTTCTGCTTGATTGCCACTTTTGTGTTGTATGCAGTGCCAATTAAGGCTGTGGTGGTTCTGCTGGGATTGTATGTGCTGCGACCGCCAAGGTTCAGGAGCAAGCTGCCTTCTCAGCCTTTGAATTTCTTCAGGAGGCTGCCGACCAGGGCTGATAGCTTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

1028

Amino Acids

115.62

Weight (kDa)

9.4

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	10 - 112	1.2e-21	C2 domain
C2	PF00168	286 - 383	3.5e-07	C2 domain
C2	PF00168	441 - 555	8e-13	C2 domain
C2	PF00168	614 - 727	2.4e-19	C2 domain
PRT_C	PF08372	873 - 1027	8.7e-77	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04150
fragaria_vesca	FvH4_2g20170
malus_domestica	MD05G1185200.v1.1
prunus_persica	Prupe.8G211500_v2.0.a1
pyrus_communis	pycom05g16990
rosa_chinensis	RchiOBHm_Chr6g0285931
rosa_laevigata	RLG00000012596
rosa_multiflora	Rmu_co8487333.1_g000001 Rmu_sc0004808.1_g000007
rosa_roxburghii	Rroxscaffold_7G00182590
rosa_rugosa	Rorug06G0177500
rosa_samantha	Rh6AG289600 Rh6BG291500 Rh6CG292400 Rh6DG284500
rosa_wichuraiana	Rw6G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	623
Acc36I	ACCTGC	1 cut(s)	623
Acc65I	GGTACC	1 cut(s)	2346
AccB1I	GGYRCC	1 cut(s)	2346
AccBSI	CCGCTC	1 cut(s)	247
AccI	GTMKAC	2 cut(s)	476, 2138
AccII	CGCG	2 cut(s)	288, 2674
AccIII	TCCGGA	1 cut(s)	1117
AclI	AACGTT	1 cut(s)	234
AclWI	GGATC	2 cut(s)	2018, 2527
AcoI	YGGCCR	2 cut(s)	782, 1942
AcsI	RAATTY	6 cut(s)	268, 529, 1267, 2127, 2744, 3040
AcuI	CTGAAG	3 cut(s)	503, 2181, 3031
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	6 cut(s)	743, 1145, 1790, 2006, 2276, 2348
AfeI	AGCGCT	1 cut(s)	2773
AflII	CTTAAG	2 cut(s)	770, 1802
AflIII	ACRYGT	1 cut(s)	2271
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	5 cut(s)	679, 1363, 1428, 2092, 3062
AjuI	GAANNNNNNNTTGG	2 cut(s)	1938, 1970
AleI	CACNNNNGTG	2 cut(s)	1839, 2939
Alw21I	GWGCWC	2 cut(s)	14, 2101
Alw26I	GTCTC	6 cut(s)	457, 770, 895, 1836, 2330, 2883
AlwI	GGATC	2 cut(s)	2018, 2527
AlwNI	CAGNNNCTG	2 cut(s)	556, 859
Ama87I	CYCGRG	1 cut(s)	1397
Aor13HI	TCCGGA	1 cut(s)	1117
Aor51HI	AGCGCT	1 cut(s)	2773
AoxI	GGCC	8 cut(s)	677, 782, 1072, 1565, 1779, 1942, 2367, 2637
ApoI	RAATTY	6 cut(s)	268, 529, 1267, 2127, 2744, 3040
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AseI	ATTAAT	1 cut(s)	669
Asp700I	GAANNNNTTC	1 cut(s)	3044
Asp718I	GGTACC	1 cut(s)	2346
AspLEI	GCGC	5 cut(s)	55, 126, 1868, 2676, 2774
AspS9I	GGNCC	5 cut(s)	252, 325, 677, 1072, 1565
AsuC2I	CCSGG	5 cut(s)	493, 1569, 1742, 2065, 2384
AsuHPI	GGTGA	4 cut(s)	647, 809, 2228, 2852
AsuII	TTCGAA	5 cut(s)	500, 1004, 1250, 1957, 2785
AvaI	CYCGRG	1 cut(s)	1397
AvaII	GGWCC	2 cut(s)	252, 325
BalI	TGGCCA	1 cut(s)	1944
BanI	GGYRCC	1 cut(s)	2346
BanII	GRGCYC	2 cut(s)	299, 2101
BauI	CACGAG	1 cut(s)	2100
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	2 cut(s)	14, 2101
BbvCI	CCTCAGC	1 cut(s)	2775
BccI	CCATC	6 cut(s)	230, 1647, 1743, 1748, 1846, 2514
BceAI	ACGGC	3 cut(s)	91, 616, 1059
BciT130I	CCWGG	5 cut(s)	681, 1365, 1430, 2094, 3064
BciVI	GTATCC	2 cut(s)	703, 2184
BclI	TGATCA	1 cut(s)	2428
BcnI	CCSGG	5 cut(s)	493, 1569, 1742, 2065, 2384
BcoDI	GTCTC	6 cut(s)	457, 770, 895, 1836, 2330, 2883
BfaI	CTAG	7 cut(s)	822, 1443, 1458, 1728, 1772, 2373, 2667
BfmI	CTRYAG	3 cut(s)	214, 940, 3080
BfoI	RGCGCY	2 cut(s)	127, 2775
BfrI	CTTAAG	2 cut(s)	770, 1802
BfuAI	ACCTGC	1 cut(s)	623
BfuI	GTATCC	2 cut(s)	703, 2184
BglI	GCCNNNNNGGC	1 cut(s)	2255
BlpI	GCTNAGC	2 cut(s)	1518, 2378
Bme18I	GGWCC	2 cut(s)	252, 325
BmeT110I	CYCGRG	1 cut(s)	1397
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	5 cut(s)	252, 325, 677, 1072, 1565
BmsI	GCATC	3 cut(s)	1909, 2175, 2289
BpiI	GAAGAC	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	1099, 1131
BpmI	CTGGAG	1 cut(s)	2905
Bpu10I	CCTNAGC	3 cut(s)	2775, 2804, 2879
Bpu1102I	GCTNAGC	2 cut(s)	1518, 2378
Bpu14I	TTCGAA	5 cut(s)	500, 1004, 1250, 1957, 2785
BpuEI	CTTGAG	2 cut(s)	1335, 1868
BpuMI	CCSGG	5 cut(s)	493, 1569, 1742, 2065, 2384
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	2883
BsaJI	CCNNGG	9 cut(s)	274, 680, 1103, 1296, 1313, 1363, 1568, 3005, 3063
BsaWI	WCCGGW	1 cut(s)	1117
BsaXI	ACNNNNNCTCC	2 cut(s)	1490, 1520
Bse118I	RCCGGY	2 cut(s)	701, 2799
Bse1I	ACTGG	1 cut(s)	721
Bse3DI	GCAATG	2 cut(s)	1389, 1690
BseAI	TCCGGA	1 cut(s)	1117
BseBI	CCWGG	5 cut(s)	681, 1365, 1430, 2094, 3064
BseDI	CCNNGG	9 cut(s)	274, 680, 1103, 1296, 1313, 1363, 1568, 3005, 3063
BseGI	GGATG	3 cut(s)	1636, 2613, 2743
BseMI	GCAATG	2 cut(s)	1389, 1690
BseNI	ACTGG	1 cut(s)	721
BseX3I	CGGCCG	1 cut(s)	782
BseYI	CCCAGC	2 cut(s)	330, 2980
BsgI	GTGCAG	4 cut(s)	581, 2014, 2174, 2252
Bsh1236I	CGCG	2 cut(s)	288, 2674
Bsh1285I	CGRYCG	2 cut(s)	785, 3002
BshFI	GGCC	8 cut(s)	679, 784, 1074, 1567, 1781, 1944, 2369, 2639
BshNI	GGYRCC	1 cut(s)	2346
BsiEI	CGRYCG	2 cut(s)	785, 3002
BsiHKAI	GWGCWC	2 cut(s)	14, 2101
BsiHKCI	CYCGRG	1 cut(s)	1397
BslFI	GGGAC	8 cut(s)	311, 727, 1181, 1225, 1294, 1346, 1969, 2661
BsmAI	GTCTC	6 cut(s)	457, 770, 895, 1836, 2330, 2883
BsmFI	GGGAC	8 cut(s)	311, 727, 1181, 1225, 1294, 1346, 1969, 2661
BsmI	GAATGC	2 cut(s)	1016, 1246
BsnI	GGCC	8 cut(s)	679, 784, 1074, 1567, 1781, 1944, 2369, 2639
Bso31I	GGTCTC	1 cut(s)	2883
BsoBI	CYCGRG	1 cut(s)	1397
Bsp119I	TTCGAA	5 cut(s)	500, 1004, 1250, 1957, 2785
Bsp1286I	GDGCHC	3 cut(s)	14, 299, 2101
Bsp13I	TCCGGA	1 cut(s)	1117
Bsp1407I	TGTACA	2 cut(s)	1788, 2274
Bsp143I	GATC	6 cut(s)	1798, 2023, 2152, 2428, 2532, 2916
Bsp1720I	GCTNAGC	2 cut(s)	1518, 2378
BspANI	GGCC	8 cut(s)	679, 784, 1074, 1567, 1781, 1944, 2369, 2639
BspEI	TCCGGA	1 cut(s)	1117
BspFNI	CGCG	2 cut(s)	288, 2674
BspHI	TCATGA	1 cut(s)	2181
BspMI	ACCTGC	1 cut(s)	623
BspPI	GGATC	2 cut(s)	2018, 2527
BspT104I	TTCGAA	5 cut(s)	500, 1004, 1250, 1957, 2785
BspT107I	GGYRCC	1 cut(s)	2346
BspTI	CTTAAG	2 cut(s)	770, 1802
BspTNI	GGTCTC	1 cut(s)	2883
BsrBI	CCGCTC	1 cut(s)	247
BsrDI	GCAATG	2 cut(s)	1389, 1690
BsrFI	RCCGGY	2 cut(s)	701, 2799
BsrGI	TGTACA	2 cut(s)	1788, 2274
BsrI	ACTGG	1 cut(s)	721
BssAI	RCCGGY	2 cut(s)	701, 2799
BssECI	CCNNGG	9 cut(s)	274, 680, 1103, 1296, 1313, 1363, 1568, 3005, 3063
BssMI	GATC	6 cut(s)	1798, 2023, 2152, 2428, 2532, 2916
BssNI	GRCGYC	1 cut(s)	198
BssSI	CACGAG	1 cut(s)	2100
BssT1I	CCWWGG	3 cut(s)	1296, 1313, 3005
Bst2BI	CACGAG	1 cut(s)	2100
Bst2UI	CCWGG	5 cut(s)	681, 1365, 1430, 2094, 3064
Bst4CI	ACNGT	7 cut(s)	7, 451, 481, 1020, 1969, 2035, 2833
Bst6I	CTCTTC	2 cut(s)	315, 1585
BstACI	GRCGYC	1 cut(s)	198
BstAFI	CTTAAG	2 cut(s)	770, 1802
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstAUI	TGTACA	2 cut(s)	1788, 2274
BstBI	TTCGAA	5 cut(s)	500, 1004, 1250, 1957, 2785
BstC8I	GCNNGC	5 cut(s)	703, 1611, 2861, 3020, 3077
BstF5I	GGATG	3 cut(s)	1636, 2613, 2743
BstFNI	CGCG	2 cut(s)	288, 2674
BstH2I	RGCGCY	2 cut(s)	127, 2775
BstHHI	GCGC	5 cut(s)	55, 126, 1868, 2676, 2774
BstKTI	GATC	6 cut(s)	1801, 2026, 2155, 2431, 2535, 2919
BstMAI	GTCTC	6 cut(s)	457, 770, 895, 1836, 2330, 2883
BstMBI	GATC	6 cut(s)	1798, 2023, 2152, 2428, 2532, 2916
BstMCI	CGRYCG	2 cut(s)	785, 3002
BstMWI	GCNNNNNNNGC	8 cut(s)	294, 559, 580, 1226, 2255, 2860, 3001, 3031
BstNI	CCWGG	5 cut(s)	681, 1365, 1430, 2094, 3064
BstNSI	RCATGY	3 cut(s)	2266, 2275, 2425
BstSFI	CTRYAG	3 cut(s)	214, 940, 3080
BstUI	CGCG	2 cut(s)	288, 2674
BstV2I	GAAGAC	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	1320
BstZI	CGGCCG	1 cut(s)	782
BsuI	GTATCC	2 cut(s)	703, 2184
BsuRI	GGCC	8 cut(s)	679, 784, 1074, 1567, 1781, 1944, 2369, 2639
BtgZI	GCGATG	1 cut(s)	2369
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	3 cut(s)	1636, 2613, 2743
BtsI	GCAGTG	4 cut(s)	549, 1145, 1801, 2958
BtsIMutI	CAGTG	4 cut(s)	549, 1145, 1801, 2958
BveI	ACCTGC	1 cut(s)	623
Cac8I	GCNNGC	5 cut(s)	703, 1611, 2861, 3020, 3077
CaiI	CAGNNNCTG	2 cut(s)	556, 859
CciI	TCATGA	1 cut(s)	2181
CfoI	GCGC	5 cut(s)	55, 126, 1868, 2676, 2774
Cfr10I	RCCGGY	2 cut(s)	701, 2799
Cfr13I	GGNCC	5 cut(s)	252, 325, 677, 1072, 1565
CseI	GACGC	3 cut(s)	206, 462, 2707
CsiI	ACCWGGT	1 cut(s)	1428
Csp6I	GTAC	6 cut(s)	742, 1144, 1789, 2005, 2275, 2347
CviQI	GTAC	6 cut(s)	742, 1144, 1789, 2005, 2275, 2347
DpnI	GATC	6 cut(s)	1800, 2025, 2154, 2430, 2534, 2918
DpnII	GATC	6 cut(s)	1798, 2023, 2152, 2428, 2532, 2916
EaeI	YGGCCR	2 cut(s)	782, 1942
EagI	CGGCCG	1 cut(s)	782
Eam1104I	CTCTTC	2 cut(s)	315, 1585
EarI	CTCTTC	2 cut(s)	315, 1585
EciI	GGCGGA	3 cut(s)	685, 735, 935
Ecl136II	GAGCTC	1 cut(s)	2099
EclXI	CGGCCG	1 cut(s)	782
Eco130I	CCWWGG	3 cut(s)	1296, 1313, 3005
Eco24I	GRGCYC	2 cut(s)	299, 2101
Eco31I	GGTCTC	1 cut(s)	2883
Eco47I	GGWCC	2 cut(s)	252, 325
Eco47III	AGCGCT	1 cut(s)	2773
Eco52I	CGGCCG	1 cut(s)	782
Eco53kI	GAGCTC	1 cut(s)	2099
Eco57I	CTGAAG	3 cut(s)	503, 2181, 3031
Eco88I	CYCGRG	1 cut(s)	1397
EcoICRI	GAGCTC	1 cut(s)	2099
EcoO109I	RGGNCCY	2 cut(s)	325, 677
EcoRI	GAATTC	3 cut(s)	529, 2127, 2744
EcoRII	CCWGG	5 cut(s)	679, 1363, 1428, 2092, 3062
EcoT14I	CCWWGG	3 cut(s)	1296, 1313, 3005
EcoT22I	ATGCAT	2 cut(s)	1016, 2304
EcoT38I	GRGCYC	2 cut(s)	299, 2101
ErhI	CCWWGG	3 cut(s)	1296, 1313, 3005
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	8 cut(s)	311, 727, 1181, 1225, 1294, 1346, 1969, 2661
FauI	CCCGC	4 cut(s)	596, 899, 1901, 2809
FauNDI	CATATG	1 cut(s)	2442
FbaI	TGATCA	1 cut(s)	2428
FblI	GTMKAC	2 cut(s)	476, 2138
FokI	GGATG	3 cut(s)	1643, 2600, 2750
FriOI	GRGCYC	2 cut(s)	299, 2101
FspBI	CTAG	7 cut(s)	822, 1443, 1458, 1728, 1772, 2373, 2667
GlaI	GCGC	5 cut(s)	54, 125, 1867, 2675, 2773
GsaI	CCCAGC	2 cut(s)	334, 2984
GsuI	CTGGAG	1 cut(s)	2905
HaeII	RGCGCY	2 cut(s)	127, 2775
HaeIII	GGCC	8 cut(s)	679, 784, 1074, 1567, 1781, 1944, 2369, 2639
HgaI	GACGC	3 cut(s)	206, 462, 2707
HhaI	GCGC	5 cut(s)	55, 126, 1868, 2676, 2774
Hin1I	GRCGYC	1 cut(s)	198
Hin6I	GCGC	5 cut(s)	53, 124, 1866, 2674, 2772
HinP1I	GCGC	5 cut(s)	53, 124, 1866, 2674, 2772
HindIII	AAGCTT	2 cut(s)	515, 1978
HphI	GGTGA	4 cut(s)	647, 809, 2228, 2852
Hpy166II	GTNNAC	6 cut(s)	477, 742, 2007, 2139, 2277, 2311
Hpy188I	TCNGA	7 cut(s)	131, 278, 309, 374, 1104, 1329, 2152
Hpy8I	GTNNAC	6 cut(s)	477, 742, 2007, 2139, 2277, 2311
Hpy99I	CGWCG	1 cut(s)	409
HpyCH4III	ACNGT	7 cut(s)	7, 451, 481, 1020, 1969, 2035, 2833
HpyCH4IV	ACGT	3 cut(s)	189, 234, 2903
HpyF10VI	GCNNNNNNNGC	8 cut(s)	294, 559, 580, 1226, 2255, 2860, 3001, 3031
HpySE526I	ACGT	3 cut(s)	189, 234, 2903
Hsp92I	GRCGYC	1 cut(s)	198
HspAI	GCGC	5 cut(s)	53, 124, 1866, 2674, 2772
Kpn2I	TCCGGA	1 cut(s)	1117
KpnI	GGTACC	1 cut(s)	2350
KroI	GCCGGC	1 cut(s)	701
KroNI	GCCGGC	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	2428
Kzo9I	GATC	6 cut(s)	1798, 2023, 2152, 2428, 2532, 2916
LweI	GCATC	3 cut(s)	1909, 2175, 2289
MabI	ACCWGGT	1 cut(s)	1428
MaeI	CTAG	7 cut(s)	822, 1443, 1458, 1728, 1772, 2373, 2667
MaeII	ACGT	3 cut(s)	189, 234, 2903
MaeIII	GTNAC	3 cut(s)	949, 2038, 2840
MalI	GATC	6 cut(s)	1800, 2025, 2154, 2430, 2534, 2918
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	6 cut(s)	1798, 2023, 2152, 2428, 2532, 2916
MfeI	CAATTG	1 cut(s)	2043
MhlI	GDGCHC	3 cut(s)	14, 299, 2101
MlsI	TGGCCA	1 cut(s)	1944
MluNI	TGGCCA	1 cut(s)	1944
MlyI	GAGTC	6 cut(s)	571, 772, 809, 1207, 1247, 1709
MmeI	TCCRAC	4 cut(s)	324, 2313, 2522, 2783
Mox20I	TGGCCA	1 cut(s)	1944
Mph1103I	ATGCAT	2 cut(s)	1016, 2304
MreI	CGCCGGCG	1 cut(s)	701
MroI	TCCGGA	1 cut(s)	1117
MroNI	GCCGGC	1 cut(s)	701
MroXI	GAANNNNTTC	1 cut(s)	3044
MscI	TGGCCA	1 cut(s)	1944
MseI	TTAA	5 cut(s)	669, 771, 1290, 1803, 2961
MslI	CAYNNNNRTG	4 cut(s)	1839, 1841, 2618, 2939
Msp20I	TGGCCA	1 cut(s)	1944
MspA1I	CMGCKG	2 cut(s)	556, 2287
MspCI	CTTAAG	2 cut(s)	770, 1802
MunI	CAATTG	1 cut(s)	2043
Mva1269I	GAATGC	2 cut(s)	1016, 1246
MvaI	CCWGG	5 cut(s)	681, 1365, 1430, 2094, 3064
MvnI	CGCG	2 cut(s)	288, 2674
MwoI	GCNNNNNNNGC	8 cut(s)	294, 559, 580, 1226, 2255, 2860, 3001, 3031
NaeI	GCCGGC	1 cut(s)	703
NciI	CCSGG	5 cut(s)	493, 1569, 1742, 2065, 2384
NdeI	CATATG	1 cut(s)	2442
NdeII	GATC	6 cut(s)	1798, 2023, 2152, 2428, 2532, 2916
NgoMIV	GCCGGC	1 cut(s)	701
NmeAIII	GCCGAG	1 cut(s)	760
NmuCI	GTSAC	2 cut(s)	2038, 2840
NsiI	ATGCAT	2 cut(s)	1016, 2304
NspI	RCATGY	3 cut(s)	2266, 2275, 2425
NspV	TTCGAA	5 cut(s)	500, 1004, 1250, 1957, 2785
OliI	CACNNNNGTG	2 cut(s)	1839, 2939
PagI	TCATGA	1 cut(s)	2181
PaqCI	CACCTGC	1 cut(s)	623
PciI	ACATGT	1 cut(s)	2271
PcsI	WCGNNNNNNNCGW	7 cut(s)	105, 177, 186, 231, 240, 2107, 2715
PctI	GAATGC	2 cut(s)	1016, 1246
PdiI	GCCGGC	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	3044
PflFI	GACNNNGTC	1 cut(s)	1358
PfoI	TCCNGGA	2 cut(s)	2063, 2092
PleI	GAGTC	6 cut(s)	571, 772, 808, 1207, 1246, 1708
PpsI	GAGTC	6 cut(s)	571, 772, 808, 1207, 1246, 1708
PpuMI	RGGWCCY	1 cut(s)	325
PscI	ACATGT	1 cut(s)	2271
PshBI	ATTAAT	1 cut(s)	669
Psp124BI	GAGCTC	1 cut(s)	2101
Psp1406I	AACGTT	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	5 cut(s)	679, 1363, 1428, 2092, 3062
PspFI	CCCAGC	2 cut(s)	330, 2980
PspGI	CCWGG	5 cut(s)	679, 1363, 1428, 2092, 3062
PspPI	GGNCC	5 cut(s)	252, 325, 677, 1072, 1565
PspPPI	RGGWCCY	1 cut(s)	325
PsrI	GAACNNNNNNTAC	2 cut(s)	1988, 2020
PstNI	CAGNNNCTG	2 cut(s)	556, 859
PsyI	GACNNNGTC	1 cut(s)	1358
PvuII	CAGCTG	1 cut(s)	556
RsaI	GTAC	6 cut(s)	743, 1145, 1790, 2006, 2276, 2348
RsaNI	GTAC	6 cut(s)	742, 1144, 1789, 2005, 2275, 2347
RseI	CAYNNNNRTG	4 cut(s)	1839, 1841, 2618, 2939
SacI	GAGCTC	1 cut(s)	2101
SaqAI	TTAA	5 cut(s)	669, 771, 1290, 1803, 2961
Sau3AI	GATC	6 cut(s)	1798, 2023, 2152, 2428, 2532, 2916
Sau96I	GGNCC	5 cut(s)	252, 325, 677, 1072, 1565
SchI	GAGTC	6 cut(s)	571, 772, 809, 1207, 1247, 1709
SduI	GDGCHC	3 cut(s)	14, 299, 2101
SexAI	ACCWGGT	1 cut(s)	1428
SfaNI	GCATC	3 cut(s)	1909, 2175, 2289
SfcI	CTRYAG	3 cut(s)	214, 940, 3080
SfuI	TTCGAA	5 cut(s)	500, 1004, 1250, 1957, 2785
SgrAI	CRCCGGYG	1 cut(s)	701
SinI	GGWCC	2 cut(s)	252, 325
SmiMI	CAYNNNNRTG	4 cut(s)	1839, 1841, 2618, 2939
SmlI	CTYRAG	4 cut(s)	770, 1350, 1802, 1847
SmoI	CTYRAG	4 cut(s)	770, 1350, 1802, 1847
SspMI	CTAG	7 cut(s)	822, 1443, 1458, 1728, 1772, 2373, 2667
SstI	GAGCTC	1 cut(s)	2101
StyI	CCWWGG	3 cut(s)	1296, 1313, 3005
TaaI	ACNGT	7 cut(s)	7, 451, 481, 1020, 1969, 2035, 2833
TaiI	ACGT	3 cut(s)	192, 237, 2906
TatI	WGTACW	4 cut(s)	741, 1788, 2004, 2274
TauI	GCSGC	9 cut(s)	53, 203, 250, 701, 787, 906, 1822, 2287, 2395
Tru1I	TTAA	5 cut(s)	669, 771, 1290, 1803, 2961
Tru9I	TTAA	5 cut(s)	669, 771, 1290, 1803, 2961
TscAI	CASTG	4 cut(s)	549, 1145, 1801, 2958
TseFI	GTSAC	2 cut(s)	2038, 2840
Tsp45I	GTSAC	2 cut(s)	2038, 2840
TspDTI	ATGAA	8 cut(s)	821, 1647, 1901, 2213, 2232, 2372, 2501, 2745
TspGWI	ACGGA	2 cut(s)	1643, 2525
TspRI	CASTG	4 cut(s)	549, 1145, 1801, 2958
Tth111I	GACNNNGTC	1 cut(s)	1358
Vha464I	CTTAAG	2 cut(s)	770, 1802
VpaK11BI	GGWCC	2 cut(s)	252, 325
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	6 cut(s)	268, 529, 1267, 2127, 2744, 3040
XbaI	TCTAGA	2 cut(s)	1727, 2666
XceI	RCATGY	3 cut(s)	2266, 2275, 2425
XcmI	CCANNNNNNNNNTGG	2 cut(s)	28, 1682
XmiI	GTMKAC	2 cut(s)	476, 2138
XmnI	GAANNNNTTC	1 cut(s)	3044
XspI	CTAG	7 cut(s)	822, 1443, 1458, 1728, 1772, 2373, 2667
Zsp2I	ATGCAT	2 cut(s)	1016, 2304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.