Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004808.1

Orthogroup ID

OG0015165

Physical Location & Seq

Genomic Coordinates Forward (+)

52106 .. 55174

Gene Structure 3069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004808.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3069 bp

atgactgtgaccaacagcaccggcaaagaacgccttgtggtggaggtggtggcggcccacaacctcatgcccaaagacggcgaaggctcgtcttccccattcgtcgaaatcgaatttgaaaaccagaggctccgaacccaggtcaagtacaaggacctgaacccggtctggaacgagaagctagtctttcgtgtcaaggacgtggctgatcttccctacagagccatagaggtcaacattttcaacgagcggaggtccggtaacagcagaaattttctgggtaaagttagagtttctggttccaatattgctaaggaaggagaagagattcctcagctttatactctcgacaaaagaagcctcttttcacatatcagaggcgagattagcttgaagctttacctttcgacgagagaagaggtcaaggaagttggggctaatggaatagtgggttcctctgtttccaactctgcttcttcctctgggttttccaagaaaagcaagaaacttcagggtcaaaactcggttatggtgtcacagaaccagttgatacaagaagcaaagccaacgcagcagggtcagagcaacaataatcactcaaagcctgtggagaacaaccaaggagtgatgatgaagccgattctgatcaatacaggccctgtttctgcaatctccggcggcggcggcggagcaaccggcggaggaggcagtagcggaggtggtgtttacggaaatgggttgacggagttttcactgaaggagacgcggcctcagctcggcggtgagtctttgaaaaaggataaaactagctctacttatgaccttgttgagcaaatgcaatatttgtatgtgaaactggttaaagctagagacttctctgtttttggtggaggggaggttgtggctgaagtgaagttgggaaattacagaggggtaacaaagagggtgagtttgaacaatgtggagtggggtcaggtgtttgctttttctaaagattgcatacagtcttcagtggtggaggtttttgtgaaggaggggaacaaagatgacttcttgggaagggtatggtttgatttgaatgaggttccgaggagggtgccgccggatagtcagttggcgccgcagtggtatagaatggaggataagaagggagacaagtcgaaatcgggggaggtgatgatttcgatttggtttgggactcaggctgatgaggcatttgctgaagcttggcattccaaggctgcaaatgtgaattttgatgggcttggttcgattaagtccaaggtttacttgacaccaaggctttggtacctgagggttacagtgattgaagctcaagacattgttcctggggagaaagggtctgcaatgatgaggtttcctgagctttcggcgaaaatccaggtggggaatcaggtcttgaggactaggattgcgcagcctagcagtgtgaggagcctctcgaatcctttgtggaatgaggagatgatgtttgtggtggctgagcctattgaggactacttgctggtctgtgtcgaggatagggttgggccgggacgtgatgaggtggcagggagagtggttattccggtggcagcaattgaaaggcgaacagatgataagcctgtcatttcgaggtggttcaaccttgacaacggcaaccgtttcaccaatgcagctggggagtccaaagtgttgacaaggtttgggtctagaattcatttgagtgtttcacttgatggaggttatcacgtccttgatgaggctacaatgtatagcagtgatcttaagccgactgataagaggctttggaaacctcacattggtgtgcttgaaatgggtattttgggagccactgggcttatgccaatgaagatcaaagaagggaaaggagggtctagtgatgcttattgtgttgcaaagtatggacagaaatgggttcgaactcgaactgttgttgatagcttgtcgcctaagtggaacgagcagtacacgtgggaggtgtttgatccttgcactgttgttaccattggggtgtttgataattctcggattgataagaacacggccaacaatgctggagtccgtgattcccggattgggaaggttaggattcgattgtccacactcgagtctgaccgagtctacactcactcatatccgctcttgatgctgcacccttctggtgtcaagaaaatgggtgagcttcatttggcggtcaggttttcttgtgccaatgtgggtaacatgttgaacatgtacactatgccactgcttcccaagatgcattttgtgcagcctttgactgtgaatcaactggaaactttgagataccaggctatgaatgtggtggtgtcgaggcttagcaggacagagccaccgttggggagagaggtggtggagtacatgcttgaccatgactcgcatatgtggagcatgagaaggagcaaagccaacttcttcaggctagtgaatgttctatcagggcctgttgcttttggaagatttgtggagttgatgcgcagttggcagaagccaatctgctctgccttgttcgttgcaactttccttttgctagttgcatttccggagctcatagtcccaatgatcttgctgcatatggcatttgtgggaatgtggcggtttaagtcccgccctcgccacccatgtttcatggacacaaatctgtcccatgctgagagtgtttatgctgatgagttggatgaggagtttgattcgttcccaacgagtcggagtgcagagattgttaggatgaggtatgaccggcttaggagtgtggctgggaggattcaaactgttgttggtgatgtggctacacaaggtgagaggttccaagcattgctaagctggagagacccaagggcaacattcttgtttgtgatcttctgcttgattgctgctgttgtgttctatgctgtgccgattagagtggtggtggttttggtgggattgtatgtactcaggccaccgagattcaggagcaagctgccttctcagcctttgagcttcttcaggaggttgccaactagggctgatagcttgttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

1022

Amino Acids

114.48

Weight (kDa)

9.4

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04150
fragaria_vesca	FvH4_2g20170
malus_domestica	MD05G1185200.v1.1
prunus_persica	Prupe.8G211500_v2.0.a1
pyrus_communis	pycom05g16990
rosa_chinensis	RchiOBHm_Chr6g0285931
rosa_laevigata	RLG00000012596
rosa_multiflora	Rmu_co8487333.1_g000001 Rmu_sc0004808.1_g000007
rosa_roxburghii	Rroxscaffold_7G00182590
rosa_rugosa	Rorug06G0177500
rosa_samantha	Rh6AG289600 Rh6BG291500 Rh6CG292400 Rh6DG284500
rosa_wichuraiana	Rw6G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1437, 2522
Acc65I	GGTACC	1 cut(s)	1308
AccB1I	GGYRCC	3 cut(s)	1096, 1117, 1308
AccBSI	CCGCTC	2 cut(s)	250, 2164
AccI	GTMKAC	1 cut(s)	2145
AccII	CGCG	1 cut(s)	766
AccIII	TCCGGA	1 cut(s)	2587
AclWI	GGATC	1 cut(s)	2003
AcoI	YGGCCR	1 cut(s)	2067
AcsI	RAATTY	4 cut(s)	113, 271, 1252, 1716
AcuI	CTGAAG	7 cut(s)	494, 776, 927, 993, 1242, 2446, 3016
AcvI	CACGTG	1 cut(s)	1995
AcyI	GRCGYC	1 cut(s)	1118
AdeI	CACNNNGTG	1 cut(s)	2843
AfaI	GTAC	6 cut(s)	149, 1310, 1991, 2261, 2405, 2979
AfiI	CCNNNNNNNGG	9 cut(s)	40, 77, 139, 163, 776, 1762, 1823, 2100, 2384
AflII	CTTAAG	1 cut(s)	1787
AflIII	ACRYGT	3 cut(s)	1992, 2247, 2256
AjiI	CACGTC	3 cut(s)	202, 1559, 1753
AjnI	CCWGG	4 cut(s)	138, 1348, 1401, 2334
AleI	CACNNNNGTG	1 cut(s)	1824
Alw21I	GWGCWC	1 cut(s)	2595
Alw26I	GTCTC	4 cut(s)	755, 864, 1146, 2868
AlwI	GGATC	1 cut(s)	2003
AlwNI	CAGNNNCTG	2 cut(s)	659, 2489
Ama87I	CYCGRG	1 cut(s)	2129
Aor13HI	TCCGGA	1 cut(s)	2587
AoxI	GGCC	7 cut(s)	54, 655, 767, 1550, 2067, 2486, 2984
ApoI	RAATTY	4 cut(s)	113, 271, 1252, 1716
Asp700I	GAANNNNTTC	1 cut(s)	327
Asp718I	GGTACC	1 cut(s)	1308
AspLEI	GCGC	3 cut(s)	1120, 1438, 2523
AspS9I	GGNCC	6 cut(s)	55, 154, 255, 656, 1550, 2486
AsuC2I	CCSGG	3 cut(s)	164, 1554, 2095
AsuHPI	GGTGA	7 cut(s)	794, 958, 1186, 1660, 2213, 2837, 2855
AsuII	TTCGAA	1 cut(s)	1942
AvaI	CYCGRG	1 cut(s)	2129
AvaII	GGWCC	2 cut(s)	154, 255
AxyI	CCTNAGG	1 cut(s)	1313
BanI	GGYRCC	3 cut(s)	1096, 1117, 1308
BanII	GRGCYC	1 cut(s)	2595
BbrPI	CACGTG	1 cut(s)	1995
BbsI	GAAGAC	2 cut(s)	84, 999
Bbv12I	GWGCWC	1 cut(s)	2595
BbvCI	CCTCAGC	2 cut(s)	333, 771
BccI	CCATC	2 cut(s)	1253, 1733
BceAI	ACGGC	3 cut(s)	94, 1672, 2082
BcgI	CGANNNNNNTGC	2 cut(s)	1078, 1112
BciT130I	CCWGG	4 cut(s)	140, 1350, 1403, 2336
BclI	TGATCA	1 cut(s)	645
BcnI	CCSGG	3 cut(s)	164, 1554, 2095
BcoDI	GTCTC	4 cut(s)	755, 864, 1146, 2868
BfmI	CTRYAG	1 cut(s)	217
BfoI	RGCGCY	1 cut(s)	1121
BfrI	CTTAAG	1 cut(s)	1787
BlpI	GCTNAGC	3 cut(s)	1503, 2363, 2864
Bme1390I	CCNGG	7 cut(s)	140, 164, 1350, 1403, 1554, 2095, 2336
Bme18I	GGWCC	2 cut(s)	154, 255
BmeT110I	CYCGRG	1 cut(s)	2129
BmgBI	CACGTC	3 cut(s)	202, 1559, 1753
BmgT120I	GGNCC	6 cut(s)	55, 154, 255, 656, 1550, 2486
BmrFI	CCNGG	7 cut(s)	140, 164, 1350, 1403, 1554, 2095, 2336
BmrI	ACTGGG	1 cut(s)	1866
BmsI	GCATC	4 cut(s)	1894, 2160, 2274, 2508
BmuI	ACTGGG	1 cut(s)	1866
BpiI	GAAGAC	2 cut(s)	84, 999
BpmI	CTGGAG	2 cut(s)	2100, 2890
Bpu10I	CCTNAGC	5 cut(s)	312, 333, 771, 1383, 2789
Bpu1102I	GCTNAGC	3 cut(s)	1503, 2363, 2864
Bpu14I	TTCGAA	1 cut(s)	1942
BpuEI	CTTGAG	2 cut(s)	1320, 1441
BpuMI	CCSGG	3 cut(s)	164, 1554, 2095
BsaAI	YACGTR	1 cut(s)	1995
BsaBI	GATNNNNATC	1 cut(s)	644
BsaHI	GRCGYC	1 cut(s)	1118
BsaI	GGTCTC	1 cut(s)	2868
BsaJI	CCNNGG	8 cut(s)	138, 619, 1088, 1236, 1281, 1298, 1349, 2879
BsaWI	WCCGGW	3 cut(s)	257, 1588, 2587
Bsc4I	CCNNNNNNNGG	9 cut(s)	40, 77, 139, 163, 776, 1762, 1823, 2100, 2384
Bse118I	RCCGGY	3 cut(s)	20, 695, 2784
Bse1I	ACTGG	4 cut(s)	544, 861, 1861, 2322
Bse21I	CCTNAGG	1 cut(s)	1313
Bse3DI	GCAATG	2 cut(s)	1374, 2858
Bse8I	GATNNNNATC	1 cut(s)	644
BseAI	TCCGGA	1 cut(s)	2587
BseBI	CCWGG	4 cut(s)	140, 1350, 1403, 2336
BseDI	CCNNGG	8 cut(s)	138, 619, 1088, 1236, 1281, 1298, 1349, 2879
BseGI	GGATG	2 cut(s)	2728, 2778
BseJI	GATNNNNATC	1 cut(s)	644
BseLI	CCNNNNNNNGG	9 cut(s)	40, 77, 139, 163, 776, 1762, 1823, 2100, 2384
BseMI	GCAATG	2 cut(s)	1374, 2858
BseMII	CTCAG	9 cut(s)	347, 785, 1214, 1304, 1374, 1494, 2688, 2995, 3029
BseNI	ACTGG	4 cut(s)	544, 861, 1861, 2322
BseRI	GAGGAG	5 cut(s)	717, 1105, 1468, 1496, 2741
BseYI	CCCAGC	2 cut(s)	1679, 2801
BsgI	GTGCAG	3 cut(s)	2159, 2315, 2778
Bsh1236I	CGCG	1 cut(s)	766
BshFI	GGCC	7 cut(s)	56, 657, 769, 1552, 2069, 2488, 2986
BshNI	GGYRCC	3 cut(s)	1096, 1117, 1308
BsiHKAI	GWGCWC	1 cut(s)	2595
BsiHKCI	CYCGRG	1 cut(s)	2129
BslFI	GGGAC	5 cut(s)	1210, 1569, 2585, 2635, 2674
BslI	CCNNNNNNNGG	9 cut(s)	40, 77, 139, 163, 776, 1762, 1823, 2100, 2384
BsmAI	GTCTC	4 cut(s)	755, 864, 1146, 2868
BsmBI	CGTCTC	1 cut(s)	755
BsmFI	GGGAC	5 cut(s)	1210, 1569, 2585, 2635, 2674
BsmI	GAATGC	1 cut(s)	1231
BsnI	GGCC	7 cut(s)	56, 657, 769, 1552, 2069, 2488, 2986
Bso31I	GGTCTC	1 cut(s)	2868
BsoBI	CYCGRG	1 cut(s)	2129
Bsp119I	TTCGAA	1 cut(s)	1942
Bsp1286I	GDGCHC	1 cut(s)	2595
Bsp13I	TCCGGA	1 cut(s)	2587
Bsp1407I	TGTACA	1 cut(s)	2259
Bsp143I	GATC	7 cut(s)	208, 645, 1783, 1875, 2008, 2607, 2901
Bsp1720I	GCTNAGC	3 cut(s)	1503, 2363, 2864
BspANI	GGCC	7 cut(s)	56, 657, 769, 1552, 2069, 2488, 2986
BspCNI	CTCAG	9 cut(s)	346, 784, 1213, 1305, 1375, 1495, 2689, 2994, 3028
BspEI	TCCGGA	1 cut(s)	2587
BspFNI	CGCG	1 cut(s)	766
BspPI	GGATC	1 cut(s)	2003
BspT104I	TTCGAA	1 cut(s)	1942
BspT107I	GGYRCC	3 cut(s)	1096, 1117, 1308
BspTI	CTTAAG	1 cut(s)	1787
BspTNI	GGTCTC	1 cut(s)	2868
BsrBI	CCGCTC	2 cut(s)	250, 2164
BsrDI	GCAATG	2 cut(s)	1374, 2858
BsrFI	RCCGGY	3 cut(s)	20, 695, 2784
BsrGI	TGTACA	1 cut(s)	2259
BsrI	ACTGG	4 cut(s)	544, 861, 1861, 2322
BssAI	RCCGGY	3 cut(s)	20, 695, 2784
BssECI	CCNNGG	8 cut(s)	138, 619, 1088, 1236, 1281, 1298, 1349, 2879
BssMI	GATC	7 cut(s)	208, 645, 1783, 1875, 2008, 2607, 2901
BssNI	GRCGYC	1 cut(s)	1118
BssT1I	CCWWGG	5 cut(s)	619, 1236, 1281, 1298, 2879
Bst2UI	CCWGG	4 cut(s)	140, 1350, 1403, 2336
Bst4CI	ACNGT	9 cut(s)	7, 1005, 1324, 1664, 1954, 2020, 2308, 2382, 2818
Bst6I	CTCTTC	2 cut(s)	318, 411
BstACI	GRCGYC	1 cut(s)	1118
BstAFI	CTTAAG	1 cut(s)	1787
BstAPI	GCANNNNNTGC	1 cut(s)	2293
BstAUI	TGTACA	1 cut(s)	2259
BstBAI	YACGTR	1 cut(s)	1995
BstBI	TTCGAA	1 cut(s)	1942
BstC8I	GCNNGC	1 cut(s)	3005
BstENI	CCTNNNNNAGG	1 cut(s)	1760
BstF5I	GGATG	2 cut(s)	2728, 2778
BstFNI	CGCG	1 cut(s)	766
BstH2I	RGCGCY	1 cut(s)	1121
BstHHI	GCGC	3 cut(s)	1120, 1438, 2523
BstKTI	GATC	7 cut(s)	211, 648, 1786, 1878, 2011, 2610, 2904
BstMAI	GTCTC	4 cut(s)	755, 864, 1146, 2868
BstMBI	GATC	7 cut(s)	208, 645, 1783, 1875, 2008, 2607, 2901
BstNI	CCWGG	4 cut(s)	140, 1350, 1403, 2336
BstNSI	RCATGY	3 cut(s)	2251, 2260, 2410
BstSCI	CCNGG	7 cut(s)	138, 162, 1348, 1401, 1552, 2093, 2334
BstSFI	CTRYAG	1 cut(s)	217
BstUI	CGCG	1 cut(s)	766
BstV2I	GAAGAC	2 cut(s)	84, 999
BstXI	CCANNNNNNTGG	1 cut(s)	1305
Bsu36I	CCTNAGG	1 cut(s)	1313
BsuRI	GGCC	7 cut(s)	56, 657, 769, 1552, 2069, 2488, 2986
BtrI	CACGTC	3 cut(s)	202, 1559, 1753
BtsCI	GGATG	2 cut(s)	2728, 2778
BtsI	GCAGTG	4 cut(s)	1130, 1453, 1786, 2270
BtsIMutI	CAGTG	9 cut(s)	752, 1017, 1130, 1329, 1453, 1786, 1854, 2016, 2270
Cac8I	GCNNGC	1 cut(s)	3005
CaiI	CAGNNNCTG	2 cut(s)	659, 2489
CfoI	GCGC	3 cut(s)	1120, 1438, 2523
Cfr10I	RCCGGY	3 cut(s)	20, 695, 2784
Cfr13I	GGNCC	6 cut(s)	55, 154, 255, 656, 1550, 2486
CseI	GACGC	1 cut(s)	772
Csp6I	GTAC	6 cut(s)	148, 1309, 1990, 2260, 2404, 2978
CspCI	CAANNNNNGTGG	2 cut(s)	588, 623
CviAII	CATG	9 cut(s)	67, 2248, 2257, 2407, 2417, 2437, 2667, 2674, 2693
CviQI	GTAC	6 cut(s)	148, 1309, 1990, 2260, 2404, 2978
DinI	GGCGCC	1 cut(s)	1119
DpnI	GATC	7 cut(s)	210, 647, 1785, 1877, 2010, 2609, 2903
DpnII	GATC	7 cut(s)	208, 645, 1783, 1875, 2008, 2607, 2901
DraIII	CACNNNGTG	1 cut(s)	2843
EaeI	YGGCCR	1 cut(s)	2067
Eam1104I	CTCTTC	2 cut(s)	318, 411
EarI	CTCTTC	2 cut(s)	318, 411
EciI	GGCGGA	2 cut(s)	702, 714
Ecl136II	GAGCTC	1 cut(s)	2593
Eco130I	CCWWGG	5 cut(s)	619, 1236, 1281, 1298, 2879
Eco24I	GRGCYC	1 cut(s)	2595
Eco31I	GGTCTC	1 cut(s)	2868
Eco47I	GGWCC	2 cut(s)	154, 255
Eco53kI	GAGCTC	1 cut(s)	2593
Eco57I	CTGAAG	7 cut(s)	494, 776, 927, 993, 1242, 2446, 3016
Eco72I	CACGTG	1 cut(s)	1995
Eco81I	CCTNAGG	1 cut(s)	1313
Eco88I	CYCGRG	1 cut(s)	2129
EcoICRI	GAGCTC	1 cut(s)	2593
EcoNI	CCTNNNNNAGG	1 cut(s)	1760
EcoO109I	RGGNCCY	3 cut(s)	154, 656, 2486
EcoRI	GAATTC	1 cut(s)	1716
EcoRII	CCWGG	4 cut(s)	138, 1348, 1401, 2334
EcoT14I	CCWWGG	5 cut(s)	619, 1236, 1281, 1298, 2879
EcoT22I	ATGCAT	1 cut(s)	2289
EcoT38I	GRGCYC	1 cut(s)	2595
EgeI	GGCGCC	1 cut(s)	1119
EheI	GGCGCC	1 cut(s)	1119
ErhI	CCWWGG	5 cut(s)	619, 1236, 1281, 1298, 2879
Esp3I	CGTCTC	1 cut(s)	755
FaeI	CATG	9 cut(s)	70, 2251, 2260, 2410, 2420, 2440, 2670, 2677, 2696
FalI	AAGNNNNNCTT	6 cut(s)	18, 50, 170, 202, 1274, 1306
FaqI	GGGAC	5 cut(s)	1210, 1569, 2585, 2635, 2674
FatI	CATG	9 cut(s)	66, 2247, 2256, 2406, 2416, 2436, 2666, 2673, 2692
FauI	CCCGC	1 cut(s)	2660
FauNDI	CATATG	2 cut(s)	2427, 2619
FbaI	TGATCA	1 cut(s)	645
FblI	GTMKAC	1 cut(s)	2145
FokI	GGATG	2 cut(s)	2735, 2785
FriOI	GRGCYC	1 cut(s)	2595
FspI	TGCGCA	2 cut(s)	1437, 2522
GlaI	GCGC	3 cut(s)	1119, 1437, 2522
GsaI	CCCAGC	2 cut(s)	1683, 2805
GsuI	CTGGAG	2 cut(s)	2100, 2890
HaeII	RGCGCY	1 cut(s)	1121
HaeIII	GGCC	7 cut(s)	56, 657, 769, 1552, 2069, 2488, 2986
HgaI	GACGC	1 cut(s)	772
HhaI	GCGC	3 cut(s)	1120, 1438, 2523
Hin1I	GRCGYC	1 cut(s)	1118
Hin1II	CATG	9 cut(s)	70, 2251, 2260, 2410, 2420, 2440, 2670, 2677, 2696
Hin6I	GCGC	3 cut(s)	1118, 1436, 2521
HinP1I	GCGC	3 cut(s)	1118, 1436, 2521
HincII	GTYRAC	3 cut(s)	235, 741, 1698
HindII	GTYRAC	3 cut(s)	235, 741, 1698
HindIII	AAGCTT	2 cut(s)	395, 1224
HphI	GGTGA	7 cut(s)	794, 958, 1186, 1660, 2213, 2837, 2855
Hpy166II	GTNNAC	9 cut(s)	235, 727, 741, 1288, 1698, 1992, 2124, 2146, 2262
Hpy188I	TCNGA	8 cut(s)	134, 377, 582, 645, 1089, 2052, 2137, 2754
Hpy8I	GTNNAC	9 cut(s)	235, 727, 741, 1288, 1698, 1992, 2124, 2146, 2262
Hpy99I	CGWCG	2 cut(s)	107, 412
HpyCH4III	ACNGT	9 cut(s)	7, 1005, 1324, 1664, 1954, 2020, 2308, 2382, 2818
HpyCH4IV	ACGT	4 cut(s)	201, 1558, 1752, 1994
HpySE526I	ACGT	4 cut(s)	201, 1558, 1752, 1994
Hsp92I	GRCGYC	1 cut(s)	1118
Hsp92II	CATG	9 cut(s)	70, 2251, 2260, 2410, 2420, 2440, 2670, 2677, 2696
HspAI	GCGC	3 cut(s)	1118, 1436, 2521
KasI	GGCGCC	1 cut(s)	1117
Kpn2I	TCCGGA	1 cut(s)	2587
KpnI	GGTACC	1 cut(s)	1312
Ksp22I	TGATCA	1 cut(s)	645
Kzo9I	GATC	7 cut(s)	208, 645, 1783, 1875, 2008, 2607, 2901
LmnI	GCTCC	8 cut(s)	135, 689, 1455, 1850, 2433, 2445, 2590, 3000
LweI	GCATC	4 cut(s)	1894, 2160, 2274, 2508
MaeII	ACGT	4 cut(s)	201, 1558, 1752, 1994
MaeIII	GTNAC	7 cut(s)	7, 260, 534, 934, 1318, 2023, 2243
MalI	GATC	7 cut(s)	210, 647, 1785, 1877, 2010, 2609, 2903
MbiI	CCGCTC	2 cut(s)	250, 2164
MboI	GATC	7 cut(s)	208, 645, 1783, 1875, 2008, 2607, 2901
MfeI	CAATTG	1 cut(s)	1599
MhlI	GDGCHC	1 cut(s)	2595
MluCI	AATT	7 cut(s)	113, 271, 922, 1252, 1599, 1716, 2044
Mly113I	GGCGCC	1 cut(s)	1118
MlyI	GAGTC	8 cut(s)	794, 1192, 1694, 2091, 2141, 2151, 2414, 2758
MmeI	TCCRAC	3 cut(s)	489, 2700, 2732
Mph1103I	ATGCAT	1 cut(s)	2289
MroI	TCCGGA	1 cut(s)	2587
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	4 cut(s)	861, 1275, 1788, 2646
MslI	CAYNNNNRTG	4 cut(s)	1725, 1824, 1826, 2033
MspA1I	CMGCKG	1 cut(s)	1679
MspCI	CTTAAG	1 cut(s)	1787
MspR9I	CCNGG	7 cut(s)	140, 164, 1350, 1403, 1554, 2095, 2336
MunI	CAATTG	1 cut(s)	1599
Mva1269I	GAATGC	1 cut(s)	1231
MvaI	CCWGG	4 cut(s)	140, 1350, 1403, 2336
MvnI	CGCG	1 cut(s)	766
NarI	GGCGCC	1 cut(s)	1118
NciI	CCSGG	3 cut(s)	164, 1554, 2095
NdeI	CATATG	2 cut(s)	2427, 2619
NdeII	GATC	7 cut(s)	208, 645, 1783, 1875, 2008, 2607, 2901
NlaIII	CATG	9 cut(s)	70, 2251, 2260, 2410, 2420, 2440, 2670, 2677, 2696
NmeAIII	GCCGAG	1 cut(s)	756
NmuCI	GTSAC	2 cut(s)	7, 534
NsbI	TGCGCA	2 cut(s)	1437, 2522
NsiI	ATGCAT	1 cut(s)	2289
NspI	RCATGY	3 cut(s)	2251, 2260, 2410
NspV	TTCGAA	1 cut(s)	1942
OliI	CACNNNNGTG	1 cut(s)	1824
PaeR7I	CTCGAG	1 cut(s)	2129
PciI	ACATGT	2 cut(s)	2247, 2256
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 2744
PctI	GAATGC	1 cut(s)	1231
PdmI	GAANNNNTTC	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	2141
PfoI	TCCNGGA	1 cut(s)	2093
PleI	GAGTC	8 cut(s)	793, 1192, 1693, 2090, 2140, 2150, 2414, 2757
PluTI	GGCGCC	1 cut(s)	1121
PmaCI	CACGTG	1 cut(s)	1995
PmlI	CACGTG	1 cut(s)	1995
PpsI	GAGTC	8 cut(s)	793, 1192, 1693, 2090, 2140, 2150, 2414, 2757
Ppu21I	YACGTR	1 cut(s)	1995
PpuMI	RGGWCCY	1 cut(s)	154
PscI	ACATGT	2 cut(s)	2247, 2256
Psp124BI	GAGCTC	1 cut(s)	2595
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	4 cut(s)	138, 1348, 1401, 2334
PspCI	CACGTG	1 cut(s)	1995
PspFI	CCCAGC	2 cut(s)	1679, 2801
PspGI	CCWGG	4 cut(s)	138, 1348, 1401, 2334
PspPI	GGNCC	6 cut(s)	55, 154, 255, 656, 1550, 2486
PspPPI	RGGWCCY	1 cut(s)	154
PspXI	VCTCGAGB	1 cut(s)	2129
PsrI	GAACNNNNNNTAC	2 cut(s)	1973, 2005
PstNI	CAGNNNCTG	2 cut(s)	659, 2489
PsyI	GACNNNGTC	1 cut(s)	2141
PvuII	CAGCTG	1 cut(s)	1679
RsaI	GTAC	6 cut(s)	149, 1310, 1991, 2261, 2405, 2979
RsaNI	GTAC	6 cut(s)	148, 1309, 1990, 2260, 2404, 2978
RseI	CAYNNNNRTG	4 cut(s)	1725, 1824, 1826, 2033
SacI	GAGCTC	1 cut(s)	2595
SaqAI	TTAA	4 cut(s)	861, 1275, 1788, 2646
Sau3AI	GATC	7 cut(s)	208, 645, 1783, 1875, 2008, 2607, 2901
Sau96I	GGNCC	6 cut(s)	55, 154, 255, 656, 1550, 2486
SchI	GAGTC	8 cut(s)	794, 1192, 1694, 2091, 2141, 2151, 2414, 2758
ScrFI	CCNGG	7 cut(s)	140, 164, 1350, 1403, 1554, 2095, 2336
SduI	GDGCHC	1 cut(s)	2595
SfaNI	GCATC	4 cut(s)	1894, 2160, 2274, 2508
SfcI	CTRYAG	1 cut(s)	217
SfoI	GGCGCC	1 cut(s)	1119
Sfr274I	CTCGAG	1 cut(s)	2129
SfuI	TTCGAA	1 cut(s)	1942
SinI	GGWCC	2 cut(s)	154, 255
SlaI	CTCGAG	1 cut(s)	2129
SmiMI	CAYNNNNRTG	4 cut(s)	1725, 1824, 1826, 2033
SmlI	CTYRAG	4 cut(s)	1335, 1420, 1787, 2129
SmoI	CTYRAG	4 cut(s)	1335, 1420, 1787, 2129
Sse9I	AATT	7 cut(s)	113, 271, 922, 1252, 1599, 1716, 2044
SspDI	GGCGCC	1 cut(s)	1117
SspI	AATATT	2 cut(s)	307, 842
SstI	GAGCTC	1 cut(s)	2595
StyD4I	CCNGG	7 cut(s)	138, 162, 1348, 1401, 1552, 2093, 2334
StyI	CCWWGG	5 cut(s)	619, 1236, 1281, 1298, 2879
TaaI	ACNGT	9 cut(s)	7, 1005, 1324, 1664, 1954, 2020, 2308, 2382, 2818
TaiI	ACGT	4 cut(s)	204, 1561, 1755, 1997
TaqII	GACCGA	1 cut(s)	2154
TasI	AATT	7 cut(s)	113, 271, 922, 1252, 1599, 1716, 2044
TatI	WGTACW	5 cut(s)	147, 1989, 2259, 2403, 2977
TauI	GCSGC	7 cut(s)	56, 681, 684, 687, 769, 1102, 1123
Tru1I	TTAA	4 cut(s)	861, 1275, 1788, 2646
Tru9I	TTAA	4 cut(s)	861, 1275, 1788, 2646
TscAI	CASTG	9 cut(s)	759, 1017, 1130, 1329, 1453, 1786, 1861, 2023, 2277
TseFI	GTSAC	2 cut(s)	7, 534
Tsp45I	GTSAC	2 cut(s)	7, 534
TspDTI	ATGAA	6 cut(s)	647, 1709, 1886, 2198, 2357, 2662
TspGWI	ACGGA	3 cut(s)	744, 758, 2075
TspRI	CASTG	9 cut(s)	759, 1017, 1130, 1329, 1453, 1786, 1861, 2023, 2277
Tth111I	GACNNNGTC	1 cut(s)	2141
Vha464I	CTTAAG	1 cut(s)	1787
VpaK11BI	GGWCC	2 cut(s)	154, 255
XagI	CCTNNNNNAGG	1 cut(s)	1760
XapI	RAATTY	4 cut(s)	113, 271, 1252, 1716
XbaI	TCTAGA	1 cut(s)	1712
XceI	RCATGY	3 cut(s)	2251, 2260, 2410
XhoI	CTCGAG	1 cut(s)	2129
XmiI	GTMKAC	1 cut(s)	2145
XmnI	GAANNNNTTC	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	2289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.