Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0015165

Physical Location & Seq

Genomic Coordinates Forward (+)

48186089 .. 48189435

Gene Structure 3347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G024950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2997 bp

ATGATTGTGAGCAACAGCACCGGCAAAGAACGCCTTGTGGTGGAGGTGGTGGCGGCCCACAACCTCATGCCCAAAGACGGCGAAGGCTCGTCTTCCCCATTCGTCGAAATCGAATTTGAAAACCAGAGGCTCCGAACCCAGGTCAAGTACAAGGACCTGAACCCGGTCTGGAACGAGAAGCTAGTCTTTCGTGTCAAGGACGTGGCTGATCTTCCCTACAGAGCCATAGAGGTCAACATTTTCAACGAGCGGAGGTCCGGTAACAGCAGAAATTTTCTGGGTAAAGTCAGAGTTTCTGGTTCCAATATTGCTAAGGAAGGAGAAGAGATTCCTCAGCTTTATACTCTCGACAAAAGAAGCCTCTTTTCACATATCAGAGGCGAGATTAGCTTGAAGCTTTACCTTTCGACGAGAGAAGAGGTCAAGGAAGTTGGGGCTAATGGAATAGTGGGTTCCTCTGTTTCCAACTCTGCTTCTTCCTCTGGGTTTTCCAAGAAAAGCAAGAAACTTCAGGGTCAAAACTCGGTTATGGTGTCACAGAACCAGTTGATACAAGAAGCAAAGCCAACGCAGCAGGGTCAGAGCAACAATAATCACTCAAAGCCTGTGGAGAACAACCAAGGAGTGATGATGAAGCCGATTCTGATCAATACAGGCCCTGTTTCTGCAATCTCCGGCGGCGGCGGCGGAGCAACCGGTGGAGGAGGCAGTAGCGGAGGTGGTGTTTACGGAAATGGGTTGACGGAGTTTTCGCTGAAGGAGACGCGGCCTCAGCTCGGCGGTGAGTCTTTGAAAAAGGATAAAACTAGCTCTACTTATGACCTTGTTGAGCAAATGCAATATTTGTATGTGAAACTGGTTAAAGCTAGAGACTTCTCTGTTTTTGGTGGAGGGGAGGTTGTGGCTGAAGTGAAGTTGGGAAATTACAGAGGGGTAACAAAGAGGGTGAGTTTGAACAATGTGGAGTGGGGTCAGGTGTTTGCTTTTTCTAAAGATTGCATACAGTCTTCAGTGGTGGAGGTTTTTGTGAAGGAGGGGAACAAAGATGACTTCTTGGGAAGGGTATGGTTTGATTTGAATGAGGTTCCGAGGAGGGTGCCGCCGGATAGTCAGTTGGCGCCGCAGTGGTATAGAATGGAGGATAAGAAGGGAGACAAGTCGAAATCGGGGGAGGTGATGATTTCGATTTGGTTTGGGACTCAGGCTGATGAGGCATTTGCTGAAGCTTGGCATTCCAAGGCTGCAAATGTGAATTTTGATGGGCTTGGTTCGATTAAGTCCAAGGTTTACTTGACACCAAGGCTTTGGTACCTGAGGGTTACAGTGATTGAAGCTCAAGACATTGTTCCTGGGGAGAAAGGGTCTGCAATGATGAGGTTTCCTGAGCTTTCGGCGAAAATCCAGGTGGGGAATCAGGTCTTGAGGACTAGGATTGCGCAGCCTAGCAGTGTGAGGAGCCTCTCGAATCCTTTGTGGAATGAGGAGATGATGTTTGTGGTGGCTGAGCCTATTGAGGACTACTTGCTGGTCTGTGTCGAGGATAGGGTTGGGCCGGGACATGACGAGGTGCAGGGAGAGCGAACAGATGATAAGCCTGTCATTTCGAGGTGGTTCAACCTTGACAACGGCAACCGTTTCACCAATGCAGCTGGGGAGTCCAAAGTGTTGACAAGGTTTGGGTCTAGAATTCATTTGAGTGTTTCACTTGATGGAGGTTATCACGTCCTTGATGAGGCTACAATGTATAGCAGTGATCTTAAGCCGACTGATAAGAGGCTTTGGAAACCTCACATTGGTGTGCTTGAAATGGGTATTTTGGGAGCCACTGGGCTTATGCCAATGAAGATCAAAGAAGGGAAAGGAGGGTCTAGTGATGCTTATTGTGTTGCAAAGTATGGACAGAAGTGGGTTCGAACTCGAACTGTTGTTGATAGCTTGTTGCCTAAGTGGAACGAGCAGTACACGTGGGAGGTGTTTGATCCTTGCACTGTCGTTACCATTGGGGTGTTTGATAATTCTCGGATTGATAAGAACACGGCCAACAATGCTGGAGTCCGTGATTCCCGGATTGGGAAGGTTAGGATTCGATTGTCCACACTCGAGTCTGACCGAGTCTACACTCACTCATATCCGCTCTTGATGCTGCACCCTTCTGGTGTCAAGAAAATGGGTGAGCTTCATTTGGCGGTCAGGTTTTCTTGTGCCAATATGGGTAACATGTTGAACATGTACACTATGCCACTGCTTCCCAAGATGCATTTTGTGCAGCCTTTGACTGTGAATCAACTGGAAACTTTGAGATACCAGGCTATGAATGTGGTGGTGTCGAGGCTTAGCAGGACAGAGCCACCGTTGGGGAGAGAGGTGGTGGAGTACATGCTTGACCATGACTCGCATATGTGGAGCATGAGAAGGAGCAAAGCCAACTTCTTCAGGCTAGTGAATGTTCTATCAGGGCCTGTTGCTTTTGGAAGATTTGTGGAGTTGATGCGCAGTTGGCAGAAGCCAATCTGCTCTGCCTTGTTTCTCCCAATGATCTTGCTGCATATGGCATTTGTGGGAATGTGGCGGTTTAAGTCCCGCCCTCGCCACCCATGTTTCATGGACACAAATCTGTCCCATGCTGAGAGTGTTTATGCTGATGAGTTGGATGAGGAGTTTGATTCGTTCCCAACGAGTCGGAGTGCAGAGATTGTTAGGATGAGGTATGACCGGCTTAGGAGTGTGGCTGGGAGGATTCAAACTGTTGTTGGTGATGTGGCTACACAAGGTGAGAGGTTCCAAGCATTGCTAAGCTGGAGAGACCCAAGGGCAACATTCTTGTTTGTGATCTTCTGCTTGATTGCTGCTGTTGTGTTCTATGCTGTGCCGATTAGAGTGGTGGTGGTTTTGGTGGGATTGTATGCACTCAGGCCACCGAGATTCAGGAGCAAGCTGCCTTCTCAGCCTTTGAGCTTCTTCAGGAGGTTGCCAACTAGGGCTGATAGCTTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

998

Amino Acids

111.96

Weight (kDa)

9.34

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	11 - 115	1.1e-21	C2 domain
C2	PF00168	281 - 378	9.7e-06	C2 domain
C2	PF00168	436 - 526	1.8e-09	C2 domain
C2	PF00168	599 - 712	3.7e-19	C2 domain
PRT_C	PF08372	843 - 998	9.9e-74	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04150
fragaria_vesca	FvH4_2g20170
malus_domestica	MD05G1185200.v1.1
prunus_persica	Prupe.8G211500_v2.0.a1
pyrus_communis	pycom05g16990
rosa_chinensis	RchiOBHm_Chr6g0285931
rosa_laevigata	RLG00000012596
rosa_multiflora	Rmu_co8487333.1_g000001 Rmu_sc0004808.1_g000007
rosa_roxburghii	Rroxscaffold_7G00182590
rosa_rugosa	Rorug06G0177500
rosa_samantha	Rh6AG289600 Rh6BG291500 Rh6CG292400 Rh6DG284500
rosa_wichuraiana	Rw6G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1437, 2492
Acc65I	GGTACC	1 cut(s)	1308
AccB1I	GGYRCC	3 cut(s)	1096, 1117, 1308
AccBSI	CCGCTC	2 cut(s)	250, 2134
AccI	GTMKAC	1 cut(s)	2115
AccII	CGCG	1 cut(s)	766
AclWI	GGATC	1 cut(s)	1973
AcoI	YGGCCR	1 cut(s)	2037
AcsI	RAATTY	4 cut(s)	113, 271, 1252, 1686
AcuI	CTGAAG	7 cut(s)	494, 776, 927, 993, 1242, 2416, 2944
AcvI	CACGTG	1 cut(s)	1965
AcyI	GRCGYC	1 cut(s)	1118
AdeI	CACNNNGTG	1 cut(s)	2771
AfaI	GTAC	5 cut(s)	149, 1310, 1961, 2231, 2375
AfiI	CCNNNNNNNGG	9 cut(s)	40, 77, 139, 163, 776, 1732, 1793, 2070, 2354
AflII	CTTAAG	1 cut(s)	1757
AflIII	ACRYGT	3 cut(s)	1962, 2217, 2226
AgeI	ACCGGT	1 cut(s)	695
AjiI	CACGTC	2 cut(s)	202, 1723
AjnI	CCWGG	4 cut(s)	138, 1348, 1401, 2304
AleI	CACNNNNGTG	1 cut(s)	1794
Alw26I	GTCTC	4 cut(s)	755, 864, 1146, 2796
AlwI	GGATC	1 cut(s)	1973
AlwNI	CAGNNNCTG	2 cut(s)	659, 2459
Ama87I	CYCGRG	1 cut(s)	2099
AoxI	GGCC	7 cut(s)	54, 655, 767, 1550, 2037, 2456, 2912
ApeKI	GCWGC	9 cut(s)	571, 1241, 1438, 1646, 2143, 2266, 2542, 2846, 2935
ApoI	RAATTY	4 cut(s)	113, 271, 1252, 1686
ArsI	GACNNNNNNTTYG	2 cut(s)	733, 765
AsiGI	ACCGGT	1 cut(s)	695
Asp700I	GAANNNNTTC	1 cut(s)	327
Asp718I	GGTACC	1 cut(s)	1308
AspLEI	GCGC	3 cut(s)	1120, 1438, 2493
AspS9I	GGNCC	6 cut(s)	55, 154, 255, 656, 1550, 2456
AsuC2I	CCSGG	3 cut(s)	164, 1554, 2065
AsuHPI	GGTGA	7 cut(s)	794, 958, 1186, 1630, 2183, 2765, 2783
AsuII	TTCGAA	1 cut(s)	1912
AvaI	CYCGRG	1 cut(s)	2099
AvaII	GGWCC	2 cut(s)	154, 255
AxyI	CCTNAGG	1 cut(s)	1313
BanI	GGYRCC	3 cut(s)	1096, 1117, 1308
BbrPI	CACGTG	1 cut(s)	1965
BbsI	GAAGAC	2 cut(s)	84, 999
BbvCI	CCTCAGC	2 cut(s)	333, 771
BbvI	GCAGC	9 cut(s)	583, 1228, 1450, 1658, 2130, 2278, 2529, 2833, 2922
BccI	CCATC	2 cut(s)	1253, 1703
BceAI	ACGGC	3 cut(s)	94, 1642, 2052
BcgI	CGANNNNNNTGC	2 cut(s)	1078, 1112
BciT130I	CCWGG	4 cut(s)	140, 1350, 1403, 2306
BclI	TGATCA	1 cut(s)	645
BcnI	CCSGG	3 cut(s)	164, 1554, 2065
BcoDI	GTCTC	4 cut(s)	755, 864, 1146, 2796
BfaI	CTAG	9 cut(s)	182, 807, 867, 1428, 1443, 1683, 1869, 2438, 2976
BfmI	CTRYAG	1 cut(s)	217
BfoI	RGCGCY	1 cut(s)	1121
BfrI	CTTAAG	1 cut(s)	1757
BlpI	GCTNAGC	3 cut(s)	1503, 2333, 2792
Bme1390I	CCNGG	7 cut(s)	140, 164, 1350, 1403, 1554, 2065, 2306
Bme18I	GGWCC	2 cut(s)	154, 255
BmeT110I	CYCGRG	1 cut(s)	2099
BmgBI	CACGTC	2 cut(s)	202, 1723
BmgT120I	GGNCC	6 cut(s)	55, 154, 255, 656, 1550, 2456
BmrFI	CCNGG	7 cut(s)	140, 164, 1350, 1403, 1554, 2065, 2306
BmrI	ACTGGG	1 cut(s)	1836
BmsI	GCATC	4 cut(s)	1864, 2130, 2244, 2478
BmuI	ACTGGG	1 cut(s)	1836
BpiI	GAAGAC	2 cut(s)	84, 999
BpmI	CTGGAG	2 cut(s)	2070, 2818
Bpu10I	CCTNAGC	5 cut(s)	312, 333, 771, 1383, 2717
Bpu1102I	GCTNAGC	3 cut(s)	1503, 2333, 2792
Bpu14I	TTCGAA	1 cut(s)	1912
BpuEI	CTTGAG	2 cut(s)	1320, 1441
BpuMI	CCSGG	3 cut(s)	164, 1554, 2065
BsaAI	YACGTR	1 cut(s)	1965
BsaBI	GATNNNNATC	1 cut(s)	644
BsaHI	GRCGYC	1 cut(s)	1118
BsaI	GGTCTC	1 cut(s)	2796
BsaJI	CCNNGG	8 cut(s)	138, 619, 1088, 1236, 1281, 1298, 1349, 2807
BsaWI	WCCGGW	2 cut(s)	257, 695
Bsc4I	CCNNNNNNNGG	9 cut(s)	40, 77, 139, 163, 776, 1732, 1793, 2070, 2354
Bse118I	RCCGGY	3 cut(s)	20, 695, 2712
Bse1I	ACTGG	4 cut(s)	544, 861, 1831, 2292
Bse21I	CCTNAGG	1 cut(s)	1313
Bse3DI	GCAATG	2 cut(s)	1374, 2786
Bse8I	GATNNNNATC	1 cut(s)	644
BseBI	CCWGG	4 cut(s)	140, 1350, 1403, 2306
BseDI	CCNNGG	8 cut(s)	138, 619, 1088, 1236, 1281, 1298, 1349, 2807
BseGI	GGATG	2 cut(s)	2656, 2706
BseJI	GATNNNNATC	1 cut(s)	644
BseLI	CCNNNNNNNGG	9 cut(s)	40, 77, 139, 163, 776, 1732, 1793, 2070, 2354
BseMI	GCAATG	2 cut(s)	1374, 2786
BseMII	CTCAG	9 cut(s)	347, 785, 1214, 1304, 1374, 1494, 2616, 2923, 2957
BseNI	ACTGG	4 cut(s)	544, 861, 1831, 2292
BseRI	GAGGAG	5 cut(s)	717, 1105, 1468, 1496, 2669
BseXI	GCAGC	9 cut(s)	583, 1228, 1450, 1658, 2130, 2278, 2529, 2833, 2922
BseYI	CCCAGC	2 cut(s)	1649, 2729
BsgI	GTGCAG	4 cut(s)	1589, 2129, 2285, 2706
Bsh1236I	CGCG	1 cut(s)	766
BshFI	GGCC	7 cut(s)	56, 657, 769, 1552, 2039, 2458, 2914
BshNI	GGYRCC	3 cut(s)	1096, 1117, 1308
BshTI	ACCGGT	1 cut(s)	695
BsiHKCI	CYCGRG	1 cut(s)	2099
BsiSI	CCGG	9 cut(s)	21, 164, 258, 675, 696, 1103, 1553, 2065, 2713
BslFI	GGGAC	4 cut(s)	1210, 1569, 2563, 2602
BslI	CCNNNNNNNGG	9 cut(s)	40, 77, 139, 163, 776, 1732, 1793, 2070, 2354
BsmAI	GTCTC	4 cut(s)	755, 864, 1146, 2796
BsmBI	CGTCTC	1 cut(s)	755
BsmFI	GGGAC	4 cut(s)	1210, 1569, 2563, 2602
BsmI	GAATGC	1 cut(s)	1231
BsnI	GGCC	7 cut(s)	56, 657, 769, 1552, 2039, 2458, 2914
Bso31I	GGTCTC	1 cut(s)	2796
BsoBI	CYCGRG	1 cut(s)	2099
Bsp119I	TTCGAA	1 cut(s)	1912
Bsp1407I	TGTACA	1 cut(s)	2229
Bsp143I	GATC	7 cut(s)	208, 645, 1753, 1845, 1978, 2535, 2829
Bsp1720I	GCTNAGC	3 cut(s)	1503, 2333, 2792
BspANI	GGCC	7 cut(s)	56, 657, 769, 1552, 2039, 2458, 2914
BspCNI	CTCAG	9 cut(s)	346, 784, 1213, 1305, 1375, 1495, 2617, 2922, 2956
BspFNI	CGCG	1 cut(s)	766
BspPI	GGATC	1 cut(s)	1973
BspT104I	TTCGAA	1 cut(s)	1912
BspT107I	GGYRCC	3 cut(s)	1096, 1117, 1308
BspTI	CTTAAG	1 cut(s)	1757
BspTNI	GGTCTC	1 cut(s)	2796
BsrBI	CCGCTC	2 cut(s)	250, 2134
BsrDI	GCAATG	2 cut(s)	1374, 2786
BsrFI	RCCGGY	3 cut(s)	20, 695, 2712
BsrGI	TGTACA	1 cut(s)	2229
BsrI	ACTGG	4 cut(s)	544, 861, 1831, 2292
BssAI	RCCGGY	3 cut(s)	20, 695, 2712
BssECI	CCNNGG	8 cut(s)	138, 619, 1088, 1236, 1281, 1298, 1349, 2807
BssMI	GATC	7 cut(s)	208, 645, 1753, 1845, 1978, 2535, 2829
BssNI	GRCGYC	1 cut(s)	1118
BssT1I	CCWWGG	5 cut(s)	619, 1236, 1281, 1298, 2807
Bst2UI	CCWGG	4 cut(s)	140, 1350, 1403, 2306
Bst4CI	ACNGT	8 cut(s)	1005, 1324, 1634, 1924, 1990, 2278, 2352, 2746
Bst6I	CTCTTC	2 cut(s)	318, 411
BstACI	GRCGYC	1 cut(s)	1118
BstAFI	CTTAAG	1 cut(s)	1757
BstAPI	GCANNNNNTGC	1 cut(s)	2263
BstAUI	TGTACA	1 cut(s)	2229
BstBAI	YACGTR	1 cut(s)	1965
BstBI	TTCGAA	1 cut(s)	1912
BstC8I	GCNNGC	1 cut(s)	2933
BstENI	CCTNNNNNAGG	1 cut(s)	1730
BstF5I	GGATG	2 cut(s)	2656, 2706
BstFNI	CGCG	1 cut(s)	766
BstH2I	RGCGCY	1 cut(s)	1121
BstHHI	GCGC	3 cut(s)	1120, 1438, 2493
BstKTI	GATC	7 cut(s)	211, 648, 1756, 1848, 1981, 2538, 2832
BstMAI	GTCTC	4 cut(s)	755, 864, 1146, 2796
BstMBI	GATC	7 cut(s)	208, 645, 1753, 1845, 1978, 2535, 2829
BstNI	CCWGG	4 cut(s)	140, 1350, 1403, 2306
BstNSI	RCATGY	3 cut(s)	2221, 2230, 2380
BstSCI	CCNGG	7 cut(s)	138, 162, 1348, 1401, 1552, 2063, 2304
BstSFI	CTRYAG	1 cut(s)	217
BstUI	CGCG	1 cut(s)	766
BstV1I	GCAGC	9 cut(s)	583, 1228, 1450, 1658, 2130, 2278, 2529, 2833, 2922
BstV2I	GAAGAC	2 cut(s)	84, 999
BstXI	CCANNNNNNTGG	1 cut(s)	1305
Bsu36I	CCTNAGG	1 cut(s)	1313
BsuRI	GGCC	7 cut(s)	56, 657, 769, 1552, 2039, 2458, 2914
BtrI	CACGTC	2 cut(s)	202, 1723
BtsCI	GGATG	2 cut(s)	2656, 2706
BtsI	GCAGTG	4 cut(s)	1130, 1453, 1756, 2240
BtsIMutI	CAGTG	8 cut(s)	1017, 1130, 1329, 1453, 1756, 1824, 1986, 2240
Cac8I	GCNNGC	1 cut(s)	2933
CaiI	CAGNNNCTG	2 cut(s)	659, 2459
CfoI	GCGC	3 cut(s)	1120, 1438, 2493
Cfr10I	RCCGGY	3 cut(s)	20, 695, 2712
Cfr13I	GGNCC	6 cut(s)	55, 154, 255, 656, 1550, 2456
CseI	GACGC	1 cut(s)	772
Csp6I	GTAC	5 cut(s)	148, 1309, 1960, 2230, 2374
CspAI	ACCGGT	1 cut(s)	695
CspCI	CAANNNNNGTGG	2 cut(s)	588, 623
CviQI	GTAC	5 cut(s)	148, 1309, 1960, 2230, 2374
DinI	GGCGCC	1 cut(s)	1119
DpnI	GATC	7 cut(s)	210, 647, 1755, 1847, 1980, 2537, 2831
DpnII	GATC	7 cut(s)	208, 645, 1753, 1845, 1978, 2535, 2829
DraIII	CACNNNGTG	1 cut(s)	2771
EaeI	YGGCCR	1 cut(s)	2037
Eam1104I	CTCTTC	2 cut(s)	318, 411
EarI	CTCTTC	2 cut(s)	318, 411
EciI	GGCGGA	1 cut(s)	702
Eco130I	CCWWGG	5 cut(s)	619, 1236, 1281, 1298, 2807
Eco31I	GGTCTC	1 cut(s)	2796
Eco47I	GGWCC	2 cut(s)	154, 255
Eco57I	CTGAAG	7 cut(s)	494, 776, 927, 993, 1242, 2416, 2944
Eco72I	CACGTG	1 cut(s)	1965
Eco81I	CCTNAGG	1 cut(s)	1313
Eco88I	CYCGRG	1 cut(s)	2099
EcoNI	CCTNNNNNAGG	1 cut(s)	1730
EcoO109I	RGGNCCY	3 cut(s)	154, 656, 2456
EcoRI	GAATTC	1 cut(s)	1686
EcoRII	CCWGG	4 cut(s)	138, 1348, 1401, 2304
EcoT14I	CCWWGG	5 cut(s)	619, 1236, 1281, 1298, 2807
EcoT22I	ATGCAT	1 cut(s)	2259
EgeI	GGCGCC	1 cut(s)	1119
EheI	GGCGCC	1 cut(s)	1119
ErhI	CCWWGG	5 cut(s)	619, 1236, 1281, 1298, 2807
Esp3I	CGTCTC	1 cut(s)	755
FalI	AAGNNNNNCTT	6 cut(s)	18, 50, 170, 202, 1274, 1306
FaqI	GGGAC	4 cut(s)	1210, 1569, 2563, 2602
FauI	CCCGC	1 cut(s)	2588
FauNDI	CATATG	2 cut(s)	2397, 2547
FbaI	TGATCA	1 cut(s)	645
FblI	GTMKAC	1 cut(s)	2115
FokI	GGATG	2 cut(s)	2663, 2713
FspBI	CTAG	9 cut(s)	182, 807, 867, 1428, 1443, 1683, 1869, 2438, 2976
FspI	TGCGCA	2 cut(s)	1437, 2492
GlaI	GCGC	3 cut(s)	1119, 1437, 2492
GsaI	CCCAGC	2 cut(s)	1653, 2733
GsuI	CTGGAG	2 cut(s)	2070, 2818
HaeII	RGCGCY	1 cut(s)	1121
HaeIII	GGCC	7 cut(s)	56, 657, 769, 1552, 2039, 2458, 2914
HapII	CCGG	9 cut(s)	21, 164, 258, 675, 696, 1103, 1553, 2065, 2713
HgaI	GACGC	1 cut(s)	772
HhaI	GCGC	3 cut(s)	1120, 1438, 2493
Hin1I	GRCGYC	1 cut(s)	1118
Hin6I	GCGC	3 cut(s)	1118, 1436, 2491
HinP1I	GCGC	3 cut(s)	1118, 1436, 2491
HincII	GTYRAC	3 cut(s)	235, 741, 1668
HindII	GTYRAC	3 cut(s)	235, 741, 1668
HindIII	AAGCTT	2 cut(s)	395, 1224
HpaII	CCGG	9 cut(s)	21, 164, 258, 675, 696, 1103, 1553, 2065, 2713
HphI	GGTGA	7 cut(s)	794, 958, 1186, 1630, 2183, 2765, 2783
Hpy166II	GTNNAC	9 cut(s)	235, 727, 741, 1288, 1668, 1962, 2094, 2116, 2232
Hpy188I	TCNGA	9 cut(s)	134, 290, 377, 582, 645, 1089, 2022, 2107, 2682
Hpy8I	GTNNAC	9 cut(s)	235, 727, 741, 1288, 1668, 1962, 2094, 2116, 2232
Hpy99I	CGWCG	2 cut(s)	107, 412
HpyCH4III	ACNGT	8 cut(s)	1005, 1324, 1634, 1924, 1990, 2278, 2352, 2746
HpyCH4IV	ACGT	3 cut(s)	201, 1722, 1964
HpySE526I	ACGT	3 cut(s)	201, 1722, 1964
Hsp92I	GRCGYC	1 cut(s)	1118
HspAI	GCGC	3 cut(s)	1118, 1436, 2491
KasI	GGCGCC	1 cut(s)	1117
KpnI	GGTACC	1 cut(s)	1312
Ksp22I	TGATCA	1 cut(s)	645
Kzo9I	GATC	7 cut(s)	208, 645, 1753, 1845, 1978, 2535, 2829
LmnI	GCTCC	7 cut(s)	135, 689, 1455, 1820, 2403, 2415, 2928
Lsp1109I	GCAGC	9 cut(s)	583, 1228, 1450, 1658, 2130, 2278, 2529, 2833, 2922
LweI	GCATC	4 cut(s)	1864, 2130, 2244, 2478
MaeI	CTAG	9 cut(s)	182, 807, 867, 1428, 1443, 1683, 1869, 2438, 2976
MaeII	ACGT	3 cut(s)	201, 1722, 1964
MaeIII	GTNAC	6 cut(s)	260, 534, 934, 1318, 1993, 2213
MalI	GATC	7 cut(s)	210, 647, 1755, 1847, 1980, 2537, 2831
MbiI	CCGCTC	2 cut(s)	250, 2134
MboI	GATC	7 cut(s)	208, 645, 1753, 1845, 1978, 2535, 2829
MluCI	AATT	6 cut(s)	113, 271, 922, 1252, 1686, 2014
Mly113I	GGCGCC	1 cut(s)	1118
MlyI	GAGTC	8 cut(s)	794, 1192, 1664, 2061, 2111, 2121, 2384, 2686
MmeI	TCCRAC	3 cut(s)	489, 2628, 2660
Mph1103I	ATGCAT	1 cut(s)	2259
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	4 cut(s)	861, 1275, 1758, 2574
MslI	CAYNNNNRTG	4 cut(s)	1695, 1794, 1796, 2003
MspA1I	CMGCKG	1 cut(s)	1649
MspCI	CTTAAG	1 cut(s)	1757
MspI	CCGG	9 cut(s)	21, 164, 258, 675, 696, 1103, 1553, 2065, 2713
MspR9I	CCNGG	7 cut(s)	140, 164, 1350, 1403, 1554, 2065, 2306
Mva1269I	GAATGC	1 cut(s)	1231
MvaI	CCWGG	4 cut(s)	140, 1350, 1403, 2306
MvnI	CGCG	1 cut(s)	766
NarI	GGCGCC	1 cut(s)	1118
NciI	CCSGG	3 cut(s)	164, 1554, 2065
NdeI	CATATG	2 cut(s)	2397, 2547
NdeII	GATC	7 cut(s)	208, 645, 1753, 1845, 1978, 2535, 2829
NmeAIII	GCCGAG	1 cut(s)	756
NmuCI	GTSAC	1 cut(s)	534
NsbI	TGCGCA	2 cut(s)	1437, 2492
NsiI	ATGCAT	1 cut(s)	2259
NspI	RCATGY	3 cut(s)	2221, 2230, 2380
NspV	TTCGAA	1 cut(s)	1912
OliI	CACNNNNGTG	1 cut(s)	1794
PaeR7I	CTCGAG	1 cut(s)	2099
PciI	ACATGT	2 cut(s)	2217, 2226
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 2672
PctI	GAATGC	1 cut(s)	1231
PdmI	GAANNNNTTC	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	2111
PfoI	TCCNGGA	1 cut(s)	2063
PinAI	ACCGGT	1 cut(s)	695
PleI	GAGTC	8 cut(s)	793, 1192, 1663, 2060, 2110, 2120, 2384, 2685
PluTI	GGCGCC	1 cut(s)	1121
PmaCI	CACGTG	1 cut(s)	1965
PmlI	CACGTG	1 cut(s)	1965
PpsI	GAGTC	8 cut(s)	793, 1192, 1663, 2060, 2110, 2120, 2384, 2685
Ppu21I	YACGTR	1 cut(s)	1965
PpuMI	RGGWCCY	1 cut(s)	154
PscI	ACATGT	2 cut(s)	2217, 2226
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	4 cut(s)	138, 1348, 1401, 2304
PspCI	CACGTG	1 cut(s)	1965
PspFI	CCCAGC	2 cut(s)	1649, 2729
PspGI	CCWGG	4 cut(s)	138, 1348, 1401, 2304
PspPI	GGNCC	6 cut(s)	55, 154, 255, 656, 1550, 2456
PspPPI	RGGWCCY	1 cut(s)	154
PspXI	VCTCGAGB	1 cut(s)	2099
PsrI	GAACNNNNNNTAC	2 cut(s)	1943, 1975
PstNI	CAGNNNCTG	2 cut(s)	659, 2459
PsyI	GACNNNGTC	1 cut(s)	2111
PvuII	CAGCTG	1 cut(s)	1649
RsaI	GTAC	5 cut(s)	149, 1310, 1961, 2231, 2375
RsaNI	GTAC	5 cut(s)	148, 1309, 1960, 2230, 2374
RseI	CAYNNNNRTG	4 cut(s)	1695, 1794, 1796, 2003
SaqAI	TTAA	4 cut(s)	861, 1275, 1758, 2574
Sau3AI	GATC	7 cut(s)	208, 645, 1753, 1845, 1978, 2535, 2829
Sau96I	GGNCC	6 cut(s)	55, 154, 255, 656, 1550, 2456
SchI	GAGTC	8 cut(s)	794, 1192, 1664, 2061, 2111, 2121, 2384, 2686
ScrFI	CCNGG	7 cut(s)	140, 164, 1350, 1403, 1554, 2065, 2306
SfaNI	GCATC	4 cut(s)	1864, 2130, 2244, 2478
SfcI	CTRYAG	1 cut(s)	217
SfoI	GGCGCC	1 cut(s)	1119
Sfr274I	CTCGAG	1 cut(s)	2099
SfuI	TTCGAA	1 cut(s)	1912
SinI	GGWCC	2 cut(s)	154, 255
SlaI	CTCGAG	1 cut(s)	2099
SmiMI	CAYNNNNRTG	4 cut(s)	1695, 1794, 1796, 2003
SmlI	CTYRAG	4 cut(s)	1335, 1420, 1757, 2099
SmoI	CTYRAG	4 cut(s)	1335, 1420, 1757, 2099
Sse9I	AATT	6 cut(s)	113, 271, 922, 1252, 1686, 2014
SspDI	GGCGCC	1 cut(s)	1117
SspI	AATATT	2 cut(s)	307, 842
SspMI	CTAG	9 cut(s)	182, 807, 867, 1428, 1443, 1683, 1869, 2438, 2976
StyD4I	CCNGG	7 cut(s)	138, 162, 1348, 1401, 1552, 2063, 2304
StyI	CCWWGG	5 cut(s)	619, 1236, 1281, 1298, 2807
TaaI	ACNGT	8 cut(s)	1005, 1324, 1634, 1924, 1990, 2278, 2352, 2746
TaiI	ACGT	3 cut(s)	204, 1725, 1967
TaqII	GACCGA	1 cut(s)	2124
TasI	AATT	6 cut(s)	113, 271, 922, 1252, 1686, 2014
TatI	WGTACW	4 cut(s)	147, 1959, 2229, 2373
TauI	GCSGC	7 cut(s)	56, 681, 684, 687, 769, 1102, 1123
Tru1I	TTAA	4 cut(s)	861, 1275, 1758, 2574
Tru9I	TTAA	4 cut(s)	861, 1275, 1758, 2574
TscAI	CASTG	8 cut(s)	1017, 1130, 1329, 1453, 1756, 1831, 1993, 2247
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	9 cut(s)	571, 1241, 1438, 1646, 2143, 2266, 2542, 2846, 2935
Tsp45I	GTSAC	1 cut(s)	534
TspDTI	ATGAA	6 cut(s)	647, 1679, 1856, 2168, 2327, 2590
TspGWI	ACGGA	3 cut(s)	744, 758, 2045
TspRI	CASTG	8 cut(s)	1017, 1130, 1329, 1453, 1756, 1831, 1993, 2247
Tth111I	GACNNNGTC	1 cut(s)	2111
Vha464I	CTTAAG	1 cut(s)	1757
VpaK11BI	GGWCC	2 cut(s)	154, 255
XagI	CCTNNNNNAGG	1 cut(s)	1730
XapI	RAATTY	4 cut(s)	113, 271, 1252, 1686
XbaI	TCTAGA	1 cut(s)	1682
XceI	RCATGY	3 cut(s)	2221, 2230, 2380
XhoI	CTCGAG	1 cut(s)	2099
XmiI	GTMKAC	1 cut(s)	2115
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	9 cut(s)	182, 807, 867, 1428, 1443, 1683, 1869, 2438, 2976
Zsp2I	ATGCAT	1 cut(s)	2259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.