Rorug06G0177500

Multiple C2 and transmembrane domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
27984460 .. 27989164
4705 bp
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UTR
Exon/CDS
Intron
Rorug06G0177500.1

Sequence Viewer

Length: 258 bp
ATGCCCACCAACTGTTCGATGAAAGGCCACAGACAATCTCTGCAAAATTTGATTGAGGTACGTCAAGGGCTTTTGCGAAGCTCCAGTAGTGATCAATTGCTGTGCTTTTGGAAGAACCCGCTTCTTTTCTTATTTGCTCAATGGCACATCCGAAAGAAGGACAGGTGCCGCTTCGTCAGTAGCTGTAGGATAGGTGCAGATGCAGATGCAGACAAGAACTTTGACAACAAACACCATCTTGCTGTAACAAGGCTTTGA

Protein Analysis

85

Amino Acids

9.9

Weight (kDa)

9.84

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 165
AciI CCGC 2 cut(s) 119, 169
AcsI RAATTY 1 cut(s) 46
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 157
AluBI AGCT 2 cut(s) 81, 183
AluI AGCT 2 cut(s) 81, 183
AlwNI CAGNNNCTG 1 cut(s) 183
AoxI GGCC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 46
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
BanI GGYRCC 1 cut(s) 165
BccI CCATC 1 cut(s) 243
BclI TGATCA 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 167
BmsI GCATC 2 cut(s) 190, 196
BpmI CTGGAG 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 84
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 157
BsnI GGCC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 2 cut(s) 119, 169
BspANI GGCC 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 84
BssMI GATC 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 14
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 184
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 183
Csp6I GTAC 1 cut(s) 59
CviJI RGCY 5 cut(s) 27, 70, 81, 183, 253
CviKI_1 RGCY 5 cut(s) 27, 70, 81, 183, 253
CviQI GTAC 1 cut(s) 59
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
FauI CCCGC 1 cut(s) 126
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 169
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 1 cut(s) 27
Hpy188I TCNGA 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 4 cut(s) 43, 197, 203, 209
HpySE526I ACGT 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 2 cut(s) 97, 148
LweI GCATC 2 cut(s) 190, 196
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 1 cut(s) 124
MfeI CAATTG 1 cut(s) 95
MluCI AATT 2 cut(s) 46, 95
MnlI CCTC 1 cut(s) 49
MunI CAATTG 1 cut(s) 95
NdeII GATC 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 167
PstNI CAGNNNCTG 1 cut(s) 183
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 1 cut(s) 91
SetI ASST 6 cut(s) 60, 64, 83, 167, 185, 196
SfaNI GCATC 2 cut(s) 190, 196
SfcI CTRYAG 1 cut(s) 184
SgeI CNNG 6 cut(s) 77, 96, 130, 175, 226, 251
Sse9I AATT 2 cut(s) 46, 95
SsiI CCGC 2 cut(s) 119, 169
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 17
TasI AATT 2 cut(s) 46, 95
TauI GCSGC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 35
XapI RAATTY 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.