Rh6DG461800

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000672
Physical Location & Seq
Forward (+)
63116388 .. 63117143
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG461800.1

Sequence Viewer

Length: 756 bp
ATGACCACCGTATTTGAGAGACGTGAATTTGCCACCGCCGTTTATCAAAGGTATGAAAACAGAACCTACCGAAGCAAATCCTGCGTGGACGTACTTCCGATCAAATTCTACCGGTGGAAGACATATTCAGACCATAACCCAGATATCCAAGTTTTTGACACTAAACCTCCAATTGTGTCATCTACAAACGTTCTCAAGTTGCGGTTCTCGAGGGAGAGGGCAAGTGGAAATGCAAAGACAACGATGGAGAGACTTGCTAGGTATCAAAGGGTCATAGCTGGGTCTCCCAGGGAAGCAAACAAGTTAGAGAACAAGTTGGGTAGGTACCTTACCACAACTTTGGGAATTCACGAAGATGAGCAACCGTTTATTACTGTAAAAATATTGGAAATGCTCCGAGAAGCCGTCCCCGATAAAATTATAGAAGTGCACTTGATAGAAATTACATTTAGAAGTACGAATTGGTCCTTTCTGTGGGGCTTCAACGAGGACGGGGACGATATATACTACAGGGCTAAGCTGGTTCCTGCTCCGAAATCATTCATCGAGTCTCTGGAGGAAGTGAGACTACTTGATGATGATGATAATCTGGAATTGCTTGGATTGGAGTGTCCTATTTGTATGCAGGTGTTTGCAGATACCAGCATTACTCGGCTGCCATGCTCACACAATTACCATCGAGATTGCATTGTCCAGTGGCTCCAGATCAATCATGTCTGTCCCACTTGTCGTCACCCTAATGCTCTGATGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

251

Amino Acids

29.34

Weight (kDa)

6.66

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 203 - 244 3.4e-13 Ring finger domain
zf-C3HC4_2 PF13923 203 - 243 3.3e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 203 - 230 2.5e-07 RING-like zinc finger
zf-C3HC4 PF00097 204 - 243 5e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 204 - 241 6.5e-07 RING-type zinc-finger
zf-rbx1 PF12678 204 - 244 9.9e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 616
Acc36I ACCTGC 1 cut(s) 616
Acc65I GGTACC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 324
AciI CCGC 2 cut(s) 36, 202
AclI AACGTT 1 cut(s) 189
AcsI RAATTY 3 cut(s) 26, 104, 345
AfaI GTAC 3 cut(s) 93, 326, 457
AfiI CCNNNNNNNGG 1 cut(s) 474
AgeI ACCGGT 1 cut(s) 111
AgsI TTSAA 1 cut(s) 484
AjiI CACGTC 1 cut(s) 23
AjnI CCWGG 1 cut(s) 287
AjuI GAANNNNNNNTTGG 2 cut(s) 445, 477
AluBI AGCT 2 cut(s) 278, 520
AluI AGCT 2 cut(s) 278, 520
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 5 cut(s) 13, 244, 288, 555, 559
Alw44I GTGCAC 1 cut(s) 428
Ama87I CYCGRG 1 cut(s) 208
ApaLI GTGCAC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 655
ApoI RAATTY 3 cut(s) 26, 104, 345
AsiGI ACCGGT 1 cut(s) 111
Asp700I GAANNNNTTC 1 cut(s) 539
Asp718I GGTACC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 725
AvaI CYCGRG 1 cut(s) 208
AvaII GGWCC 1 cut(s) 465
BaeGI GKGCMC 1 cut(s) 432
BanI GGYRCC 1 cut(s) 324
BarI GAAGNNNNNNTAC 2 cut(s) 552, 584
BbsI GAAGAC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 642
BccI CCATC 3 cut(s) 238, 684, 742
BceAI ACGGC 2 cut(s) 23, 389
BciT130I CCWGG 1 cut(s) 289
BcoDI GTCTC 5 cut(s) 13, 244, 288, 555, 559
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 508
BfuAI ACCTGC 1 cut(s) 616
BisI GCNGC 1 cut(s) 656
BlpI GCTNAGC 1 cut(s) 516
BlsI GCNGC 1 cut(s) 657
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 465
BmeT110I CYCGRG 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 465
BmiI GGNNCC 3 cut(s) 326, 525, 701
BmrFI CCNGG 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 125
BpmI CTGGAG 2 cut(s) 575, 686
Bpu1102I GCTNAGC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 585
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 287, 288
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse118I RCCGGY 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 694
Bse8I GATNNNNATC 1 cut(s) 585
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 287, 288
BseJI GATNNNNATC 1 cut(s) 585
BseLI CCNNNNNNNGG 1 cut(s) 474
BseNI ACTGG 1 cut(s) 694
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 1 cut(s) 642
BseYI CCCAGC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 324
BshTI ACCGGT 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 3 cut(s) 392, 509, 705
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 5 cut(s) 13, 244, 288, 555, 559
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 3 cut(s) 392, 509, 705
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 2 cut(s) 99, 705
Bsp1720I GCTNAGC 1 cut(s) 516
BspACI CCGC 2 cut(s) 36, 202
BspLI GGNNCC 3 cut(s) 326, 525, 701
BspMI ACCTGC 1 cut(s) 616
BspT107I GGYRCC 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 111
BsrI ACTGG 1 cut(s) 694
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 287, 288
BssMI GATC 2 cut(s) 99, 705
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 3 cut(s) 10, 366, 376
BstAPI GCANNNNNTGC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 516
BstKTI GATC 2 cut(s) 102, 708
BstMAI GTCTC 5 cut(s) 13, 244, 288, 555, 559
BstMBI GATC 2 cut(s) 99, 705
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 508
BstSLI GKGCMC 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 642
BstV2I GAAGAC 1 cut(s) 125
BstXI CCANNNNNNTGG 1 cut(s) 340
BtrI CACGTC 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 701
BveI ACCTGC 1 cut(s) 616
Cfr10I RCCGGY 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 465
Csp6I GTAC 3 cut(s) 92, 325, 456
CspAI ACCGGT 1 cut(s) 111
CspCI CAANNNNNGTGG 1 cut(s) 30
CviAII CATG 2 cut(s) 660, 713
CviJI RGCY 7 cut(s) 278, 404, 480, 515, 520, 655, 700
CviKI_1 RGCY 7 cut(s) 278, 404, 480, 515, 520, 655, 700
CviQI GTAC 3 cut(s) 92, 325, 456
DdeI CTNAG 1 cut(s) 516
DpnI GATC 2 cut(s) 101, 707
DpnII GATC 2 cut(s) 99, 705
Eco31I GGTCTC 1 cut(s) 288
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 287
EcoRV GATATC 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 2 cut(s) 663, 716
FaqI GGGAC 3 cut(s) 392, 509, 705
FatI CATG 2 cut(s) 659, 712
Fnu4HI GCNGC 1 cut(s) 656
Fsp4HI GCNGC 1 cut(s) 656
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 656
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 2 cut(s) 575, 686
HapII CCGG 1 cut(s) 112
Hin1II CATG 2 cut(s) 663, 716
HinfI GANTC 1 cut(s) 548
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 725
Hpy166II GTNNAC 2 cut(s) 88, 430
Hpy188I TCNGA 5 cut(s) 99, 130, 398, 534, 747
Hpy188III TCNNGA 6 cut(s) 208, 350, 554, 590, 680, 703
Hpy8I GTNNAC 2 cut(s) 88, 430
HpyCH4III ACNGT 3 cut(s) 10, 366, 376
HpyCH4IV ACGT 3 cut(s) 22, 90, 189
HpyCH4V TGCA 5 cut(s) 233, 430, 625, 635, 687
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 516
HpySE526I ACGT 3 cut(s) 22, 90, 189
Hsp92II CATG 2 cut(s) 663, 716
KpnI GGTACC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 99, 705
LmnI GCTCC 3 cut(s) 399, 535, 705
Lsp1109I GCAGC 1 cut(s) 642
MaeI CTAG 1 cut(s) 258
MaeII ACGT 3 cut(s) 22, 90, 189
MaeIII GTNAC 1 cut(s) 731
MalI GATC 2 cut(s) 101, 707
MboI GATC 2 cut(s) 99, 705
MboII GAAGA 2 cut(s) 130, 365
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 9 cut(s) 26, 104, 171, 345, 417, 441, 460, 593, 670
MlyI GAGTC 1 cut(s) 557
MnlI CCTC 5 cut(s) 177, 204, 210, 481, 550
MroXI GAANNNNTTC 1 cut(s) 539
MslI CAYNNNNRTG 2 cut(s) 354, 738
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 289
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 2 cut(s) 99, 705
NlaIII CATG 2 cut(s) 663, 716
NlaIV GGNNCC 3 cut(s) 326, 525, 701
NmeAIII GCCGAG 1 cut(s) 631
NmuCI GTSAC 1 cut(s) 731
PaeR7I CTCGAG 1 cut(s) 208
PaqCI CACCTGC 1 cut(s) 616
PasI CCCWGGG 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 539
PinAI ACCGGT 1 cut(s) 111
PkrI GCNGC 1 cut(s) 657
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
Psp1406I AACGTT 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 3 cut(s) 326, 525, 701
PspPI GGNCC 1 cut(s) 465
RsaI GTAC 3 cut(s) 93, 326, 457
RsaNI GTAC 3 cut(s) 92, 325, 456
RseI CAYNNNNRTG 2 cut(s) 354, 738
SatI GCNGC 1 cut(s) 656
Sau3AI GATC 2 cut(s) 99, 705
Sau96I GGNCC 1 cut(s) 465
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 432
SfcI CTRYAG 1 cut(s) 508
Sfr274I CTCGAG 1 cut(s) 208
SinI GGWCC 1 cut(s) 465
SlaI CTCGAG 1 cut(s) 208
SmiMI CAYNNNNRTG 2 cut(s) 354, 738
SmlI CTYRAG 2 cut(s) 194, 208
SmoI CTYRAG 2 cut(s) 194, 208
Sse9I AATT 9 cut(s) 26, 104, 171, 345, 417, 441, 460, 593, 670
SsiI CCGC 2 cut(s) 36, 202
SspI AATATT 1 cut(s) 384
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 3 cut(s) 10, 366, 376
TaiI ACGT 3 cut(s) 25, 93, 192
TaqI TCGA 3 cut(s) 209, 546, 679
TasI AATT 9 cut(s) 26, 104, 171, 345, 417, 441, 460, 593, 670
TscAI CASTG 1 cut(s) 701
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 1 cut(s) 655
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 2 cut(s) 69, 532
TspRI CASTG 1 cut(s) 701
VneI GTGCAC 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 465
XapI RAATTY 3 cut(s) 26, 104, 345
XhoI CTCGAG 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 539
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.