Rh6AG067600

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000672
Physical Location & Seq
Reverse (-)
9864007 .. 9864840
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG067600.1

Sequence Viewer

Length: 834 bp
ATGAGCAGCATCACCGATGAGAACCTTGAATTTGTGGAGACAGGCATATTTGATACCTTAGCCTATCAGGAAGTAACGAACAGCTGCTACAGAAGCGGTGCCGGCGTGGACATACTGGCGATCAGATTCTGCTTCTTCAAGGTAATTAAATACTGTAATAGATTCGAAGAATTTGAGTTGGAACCAGGCGTTTTATTAGCTCATCATGTACTTAAGTTGCGGATCTCGAGAGAGAGGAGTTGTGATTCAAATAAAAGGATGGACAGGTTGGCTAGGTACAGAGGGATCATAGCTAGGTCTCCAAGGGAGAAGAGAGAGTTTGAGAGGAAGATGGTTAGGTATCTTTCAAGGATTGGAGCTCCGGAAGAAGAGCACGACTCTACTATTGAAAAAATATTGGAGGAGCTTAAAGATGCTGTCCCCGACTTGATACTTGATGTGCACATTGCGAAATTCATAACTAGATACACGGCCGAGCATTTCTTCGACGACACACACTACAGGGCCAAGCTAATTCCTGCAACCGAATCATTTATCCAGGGTTTGGAGAAAGTGAGATCACTAGAGAGTTTTGGCGGACAGACCTGTGCTATTTGTATGGAGGCATTTGCTGCACATCATCATCTGAATCGGTTGCCCTGCTTGCACTCTTATCATCAACATTGCATTGTCCAGTGGCTCCAAATCAATCACGTCTGCCCCATTTGTAGACACCCTTATGCCACTGCCTCTGCCGAGCCATCAGACCCTAATCCCAAATTCCCAATTGATATTGTTTGCTGCAAACTAGCTATTGACATTAGTATTTCCCAATTGATATATGCCGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

277

Amino Acids

31.93

Weight (kDa)

6.39

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 195 - 237 9.4e-12 Ring finger domain
zf-C3HC4_2 PF13923 196 - 236 2.1e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AccB7I CCANNNNNTGG 1 cut(s) 544
AccI GTMKAC 1 cut(s) 709
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 3 cut(s) 96, 220, 576
AclWI GGATC 2 cut(s) 230, 293
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 4 cut(s) 29, 170, 452, 758
AfaI GTAC 2 cut(s) 210, 278
AfiI CCNNNNNNNGG 1 cut(s) 544
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 5 cut(s) 29, 139, 249, 348, 389
AjiI CACGTC 1 cut(s) 694
AjnI CCWGG 2 cut(s) 184, 537
AluBI AGCT 7 cut(s) 84, 200, 293, 359, 406, 511, 791
AluI AGCT 7 cut(s) 84, 200, 293, 359, 406, 511, 791
Alw21I GWGCWC 3 cut(s) 361, 375, 444
Alw26I GTCTC 2 cut(s) 32, 303
Alw44I GTGCAC 1 cut(s) 440
AlwI GGATC 2 cut(s) 230, 293
AlwNI CAGNNNCTG 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 226
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 2 cut(s) 471, 504
ApaLI GTGCAC 1 cut(s) 440
ApeKI GCWGC 4 cut(s) 6, 84, 611, 780
ApoI RAATTY 4 cut(s) 29, 170, 452, 758
AspS9I GGNCC 1 cut(s) 504
AsuHPI GGTGA 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 165
AvaI CYCGRG 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 444
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 361
Bbv12I GWGCWC 3 cut(s) 361, 375, 444
BbvI GCAGC 4 cut(s) 18, 71, 598, 767
BccI CCATC 3 cut(s) 253, 325, 748
BceAI ACGGC 1 cut(s) 486
BciT130I CCWGG 2 cut(s) 186, 539
BcoDI GTCTC 2 cut(s) 32, 303
BfaI CTAG 6 cut(s) 273, 294, 462, 563, 788, 832
BfmI CTRYAG 2 cut(s) 88, 499
BfrI CTTAAG 1 cut(s) 212
BisI GCNGC 4 cut(s) 7, 85, 612, 781
BlsI GCNGC 4 cut(s) 8, 86, 613, 782
Bme1390I CCNGG 2 cut(s) 186, 539
BmeT110I CYCGRG 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 694
BmgT120I GGNCC 1 cut(s) 504
BmiI GGNNCC 3 cut(s) 100, 183, 680
BmrFI CCNGG 2 cut(s) 186, 539
BmsI GCATC 2 cut(s) 18, 403
BplI GAGNNNNNCTC 2 cut(s) 362, 394
Bpu10I CCTNAGC 1 cut(s) 58
Bpu14I TTCGAA 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 302, 538
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 120, 673
Bse3DI GCAATG 2 cut(s) 444, 661
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 2 cut(s) 186, 539
BseDI CCNNGG 2 cut(s) 302, 538
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 544
BseMI GCAATG 2 cut(s) 444, 661
BseNI ACTGG 2 cut(s) 120, 673
BseRI GAGGAG 2 cut(s) 250, 416
BseSI GKGCMC 1 cut(s) 444
BseX3I CGGCCG 1 cut(s) 471
BseXI GCAGC 4 cut(s) 18, 71, 598, 767
BsgI GTGCAG 1 cut(s) 597
Bsh1285I CGRYCG 1 cut(s) 474
BshFI GGCC 2 cut(s) 473, 506
BshNI GGYRCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 474
BsiHKAI GWGCWC 3 cut(s) 361, 375, 444
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 3 cut(s) 102, 362, 825
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 1 cut(s) 544
BsmAI GTCTC 2 cut(s) 32, 303
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 2 cut(s) 473, 506
Bso31I GGTCTC 1 cut(s) 303
BsoBI CYCGRG 1 cut(s) 226
Bsp119I TTCGAA 1 cut(s) 165
Bsp1286I GDGCHC 3 cut(s) 361, 375, 444
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 4 cut(s) 120, 222, 285, 557
BspACI CCGC 3 cut(s) 96, 220, 576
BspANI GGCC 2 cut(s) 473, 506
BspEI TCCGGA 1 cut(s) 361
BspLI GGNNCC 3 cut(s) 100, 183, 680
BspPI GGATC 2 cut(s) 230, 293
BspQI GCTCTTC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 303
BsrDI GCAATG 2 cut(s) 444, 661
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 2 cut(s) 120, 673
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 302, 538
BssMI GATC 4 cut(s) 120, 222, 285, 557
BssT1I CCWWGG 1 cut(s) 302
Bst2UI CCWGG 2 cut(s) 186, 539
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 2 cut(s) 305, 363
BstAFI CTTAAG 1 cut(s) 212
BstAPI GCANNNNNTGC 1 cut(s) 611
BstBI TTCGAA 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 103, 644
BstDEI CTNAG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 264
BstKTI GATC 4 cut(s) 123, 225, 288, 560
BstMAI GTCTC 2 cut(s) 32, 303
BstMBI GATC 4 cut(s) 120, 222, 285, 557
BstMCI CGRYCG 1 cut(s) 474
BstMWI GCNNNNNNNGC 4 cut(s) 93, 102, 611, 643
BstNI CCWGG 2 cut(s) 186, 539
BstSCI CCNGG 2 cut(s) 184, 537
BstSFI CTRYAG 2 cut(s) 88, 499
BstSLI GKGCMC 1 cut(s) 444
BstV1I GCAGC 4 cut(s) 18, 71, 598, 767
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BstZI CGGCCG 1 cut(s) 471
BsuRI GGCC 2 cut(s) 473, 506
BtrI CACGTC 1 cut(s) 694
BtsCI GGATG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 2 cut(s) 680, 723
Cac8I GCNNGC 2 cut(s) 103, 644
CaiI CAGNNNCTG 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 504
Csp6I GTAC 2 cut(s) 209, 277
CviAII CATG 1 cut(s) 206
CviQI GTAC 2 cut(s) 209, 277
DdeI CTNAG 1 cut(s) 58
DpnI GATC 4 cut(s) 122, 224, 287, 559
DpnII GATC 4 cut(s) 120, 222, 285, 557
EaeI YGGCCR 1 cut(s) 471
EagI CGGCCG 1 cut(s) 471
Eam1104I CTCTTC 2 cut(s) 305, 363
EarI CTCTTC 2 cut(s) 305, 363
EciI GGCGGA 1 cut(s) 591
Ecl136II GAGCTC 1 cut(s) 359
EclXI CGGCCG 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 361
Eco31I GGTCTC 1 cut(s) 303
Eco52I CGGCCG 1 cut(s) 471
Eco53kI GAGCTC 1 cut(s) 359
Eco88I CYCGRG 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 359
EcoRII CCWGG 2 cut(s) 184, 537
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 1 cut(s) 209
FaiI YATR 9 cut(s) 47, 113, 207, 290, 458, 599, 720, 820, 822
FaqI GGGAC 1 cut(s) 404
FatI CATG 1 cut(s) 205
FblI GTMKAC 1 cut(s) 709
Fnu4HI GCNGC 4 cut(s) 7, 85, 612, 781
FokI GGATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 4 cut(s) 7, 85, 612, 781
FspBI CTAG 6 cut(s) 273, 294, 462, 563, 788, 832
GluI GCNGC 4 cut(s) 7, 85, 612, 781
HaeIII GGCC 2 cut(s) 473, 506
HapII CCGG 3 cut(s) 102, 362, 825
Hin1II CATG 1 cut(s) 209
HinfI GANTC 6 cut(s) 126, 162, 245, 377, 527, 628
HpaII CCGG 3 cut(s) 102, 362, 825
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 3 cut(s) 109, 442, 710
Hpy188I TCNGA 3 cut(s) 125, 627, 745
Hpy188III TCNNGA 4 cut(s) 68, 226, 228, 362
Hpy8I GTNNAC 3 cut(s) 109, 442, 710
Hpy99I CGWCG 1 cut(s) 491
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 693
HpyCH4V TGCA 6 cut(s) 442, 521, 614, 646, 666, 783
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 102, 611, 643
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 1 cut(s) 693
Hsp92II CATG 1 cut(s) 209
Kpn2I TCCGGA 1 cut(s) 361
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 4 cut(s) 120, 222, 285, 557
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 4 cut(s) 356, 364, 403, 684
Lsp1109I GCAGC 4 cut(s) 18, 71, 598, 767
LweI GCATC 2 cut(s) 18, 403
MaeI CTAG 6 cut(s) 273, 294, 462, 563, 788, 832
MaeII ACGT 1 cut(s) 693
MaeIII GTNAC 1 cut(s) 73
MalI GATC 4 cut(s) 122, 224, 287, 559
MboI GATC 4 cut(s) 120, 222, 285, 557
MboII GAAGA 7 cut(s) 127, 179, 322, 340, 377, 380, 475
MfeI CAATTG 2 cut(s) 765, 812
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 3 cut(s) 361, 375, 444
MluCI AATT 8 cut(s) 29, 144, 170, 452, 513, 758, 765, 812
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 6 cut(s) 228, 275, 318, 394, 595, 739
MroI TCCGGA 1 cut(s) 361
MroNI GCCGGC 1 cut(s) 101
MseI TTAA 3 cut(s) 147, 213, 408
MslI CAYNNNNRTG 1 cut(s) 717
MspA1I CMGCKG 1 cut(s) 84
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 3 cut(s) 102, 362, 825
MspR9I CCNGG 2 cut(s) 186, 539
MunI CAATTG 2 cut(s) 765, 812
MvaI CCWGG 2 cut(s) 186, 539
MwoI GCNNNNNNNGC 4 cut(s) 93, 102, 611, 643
NaeI GCCGGC 1 cut(s) 103
NdeII GATC 4 cut(s) 120, 222, 285, 557
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 3 cut(s) 100, 183, 680
NmeAIII GCCGAG 2 cut(s) 499, 760
NspV TTCGAA 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 363
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 5 cut(s) 126, 162, 245, 527, 628
PflMI CCANNNNNTGG 1 cut(s) 544
PkrI GCNGC 4 cut(s) 8, 86, 613, 782
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 361
Psp6I CCWGG 2 cut(s) 184, 537
PspGI CCWGG 2 cut(s) 184, 537
PspN4I GGNNCC 3 cut(s) 100, 183, 680
PspPI GGNCC 1 cut(s) 504
PsrI GAACNNNNNNTAC 2 cut(s) 71, 103
PstNI CAGNNNCTG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 222
PvuII CAGCTG 1 cut(s) 84
RsaI GTAC 2 cut(s) 210, 278
RsaNI GTAC 2 cut(s) 209, 277
RseI CAYNNNNRTG 1 cut(s) 717
SacI GAGCTC 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 3 cut(s) 147, 213, 408
SatI GCNGC 4 cut(s) 7, 85, 612, 781
Sau3AI GATC 4 cut(s) 120, 222, 285, 557
Sau96I GGNCC 1 cut(s) 504
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 186, 539
SduI GDGCHC 3 cut(s) 361, 375, 444
SfaNI GCATC 2 cut(s) 18, 403
SfcI CTRYAG 2 cut(s) 88, 499
Sfr274I CTCGAG 1 cut(s) 226
SfuI TTCGAA 1 cut(s) 165
SlaI CTCGAG 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 717
SmlI CTYRAG 2 cut(s) 212, 226
SmoI CTYRAG 2 cut(s) 212, 226
Sse9I AATT 8 cut(s) 29, 144, 170, 452, 513, 758, 765, 812
SsiI CCGC 3 cut(s) 96, 220, 576
SspI AATATT 1 cut(s) 396
SspMI CTAG 6 cut(s) 273, 294, 462, 563, 788, 832
SstI GAGCTC 1 cut(s) 361
StyD4I CCNGG 2 cut(s) 184, 537
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 696
TaqI TCGA 3 cut(s) 165, 227, 486
TasI AATT 8 cut(s) 29, 144, 170, 452, 513, 758, 765, 812
TatI WGTACW 1 cut(s) 208
TfiI GAWTC 5 cut(s) 126, 162, 245, 527, 628
Tru1I TTAA 3 cut(s) 147, 213, 408
Tru9I TTAA 3 cut(s) 147, 213, 408
TscAI CASTG 2 cut(s) 680, 730
TseI GCWGC 4 cut(s) 6, 84, 611, 780
TspDTI ATGAA 1 cut(s) 445
TspRI CASTG 2 cut(s) 680, 730
Van91I CCANNNNNTGG 1 cut(s) 544
Vha464I CTTAAG 1 cut(s) 212
VneI GTGCAC 1 cut(s) 440
XapI RAATTY 4 cut(s) 29, 170, 452, 758
XhoI CTCGAG 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 709
XspI CTAG 6 cut(s) 273, 294, 462, 563, 788, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.