Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Forward (+)

27014134 .. 27017078

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGCACCTTTTCTGATGATGAGAATTATTATTCGTTGTTCGAGACCCATCATGAATTTTCCAGCCAAGCAATTCAAATCAATAATATCAGGCACCGAAGCAGAGCCGGCGTGGACATAATTCCGATCACATTCCTCCATTTCAGGGTATATATAAACTACGATCCAGTTGTCCGTGGCTATGTTGTTGACCCACCAACTCTGTTACTTAAGAGAACTCTCAAGTTGCGGTTCTCCAGGGAGAAGGCCATCAGTGGAGATGCAAAGACAAGATTGGAGAGATTTGCAAGGTATAAAAGGGTCATAGCTGGCTCACCCAAGGAAGCTAACAAGTTACGGAACAAGCTGGGTAGGTATCTCTTCAAAGCTATGGGTTTTCCCGAACATAAGCATCCCTATATTATTGAACCATTATTGGCTAAGCTTAAATCAGCCATCCCCGATAAAGCTATCGGTGTGATGATCTCGGATCTGACATGTAGAGATACAGCGGAGTCAATGCACATGAACTTGAACCCGGACGATGAAGACTTCAAGCCCAAAATGATTCCGGCATCAGAATCATTCATCCTAGCTCTGGAGGAAGCGAGTCCACCAGATGATGATGAATTAGAGTGTGCTATTTGTATGGAAATGTTTGCGCATGCCAGCAATACCATCACTCGGTTGCCCTGCTCACACTATTATCATCGAGATTGCATTATCGCGTGGCTCCACATGAATCATCTCTGTCCTACTTGTCGACACCCTAACCCTCAATCTACTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

257

Amino Acids

29.52

Weight (kDa)

7.68

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	205 - 248	4.7e-12	Ring finger domain
zf-RING_11	PF17123	205 - 234	1.8e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	205 - 247	3.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	206 - 247	7.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	642
AccB1I	GGYRCC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	742
AccII	CGCG	1 cut(s)	707
AciI	CCGC	2 cut(s)	229, 491
AclWI	GGATC	2 cut(s)	158, 477
AcsI	RAATTY	1 cut(s)	56
AfiI	CCNNNNNNNGG	3 cut(s)	145, 577, 663
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	476
AgsI	TTSAA	5 cut(s)	77, 364, 407, 514, 535
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	7 cut(s)	308, 326, 346, 368, 424, 449, 575
AluI	AGCT	7 cut(s)	308, 326, 346, 368, 424, 449, 575
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	158, 477
AoxI	GGCC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	643
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	4 cut(s)	57, 257, 443, 665
BciT130I	CCWGG	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	572
BfrI	CTTAAG	1 cut(s)	209
BlpI	GCTNAGC	1 cut(s)	420
Bme1390I	CCNGG	2 cut(s)	238, 518
BmiI	GGNNCC	2 cut(s)	95, 713
BmrFI	CCNGG	2 cut(s)	238, 518
BmsI	GCATC	3 cut(s)	250, 400, 563
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	2 cut(s)	220, 599
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	518
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	175, 237, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 577, 663
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	3 cut(s)	175, 237, 318
BseGI	GGATG	3 cut(s)	391, 435, 567
BseLI	CCNNNNNNNGG	3 cut(s)	145, 577, 663
BseNI	ACTGG	1 cut(s)	167
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	707
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	3 cut(s)	108, 518, 551
BslI	CCNNNNNNNGG	3 cut(s)	145, 577, 663
BsmAI	GTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	248
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	126, 163, 462, 469
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	2 cut(s)	229, 491
BspANI	GGCC	1 cut(s)	248
BspFNI	CGCG	1 cut(s)	707
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	95, 713
BspPI	GGATC	2 cut(s)	158, 477
BspT107I	GGYRCC	1 cut(s)	93
BspTI	CTTAAG	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	3 cut(s)	175, 237, 318
BssMI	GATC	4 cut(s)	126, 163, 462, 469
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	365
BstAFI	CTTAAG	1 cut(s)	209
BstC8I	GCNNGC	4 cut(s)	109, 310, 645, 649
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	3 cut(s)	391, 435, 567
BstFNI	CGCG	1 cut(s)	707
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	4 cut(s)	129, 166, 465, 472
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	4 cut(s)	126, 163, 462, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	238
BstNSI	RCATGY	2 cut(s)	480, 647
BstSCI	CCNGG	2 cut(s)	236, 516
BstUI	CGCG	1 cut(s)	707
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	3 cut(s)	391, 435, 567
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	4 cut(s)	109, 310, 645, 649
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	1 cut(s)	643
Cfr10I	RCCGGY	1 cut(s)	107
CviAII	CATG	5 cut(s)	53, 477, 505, 644, 718
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	4 cut(s)	128, 165, 464, 471
DpnII	GATC	4 cut(s)	126, 163, 462, 469
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	5 cut(s)	56, 480, 508, 647, 721
FatI	CATG	5 cut(s)	52, 476, 504, 643, 717
FblI	GTMKAC	1 cut(s)	742
FokI	GGATG	3 cut(s)	378, 422, 554
FspBI	CTAG	1 cut(s)	572
FspI	TGCGCA	1 cut(s)	642
GlaI	GCGC	1 cut(s)	642
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	2 cut(s)	220, 599
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	3 cut(s)	108, 518, 551
HhaI	GCGC	1 cut(s)	643
Hin1II	CATG	5 cut(s)	56, 480, 508, 647, 721
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HincII	GTYRAC	2 cut(s)	190, 743
HindII	GTYRAC	2 cut(s)	190, 743
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	5 cut(s)	494, 547, 560, 589, 721
HpaII	CCGG	3 cut(s)	108, 518, 551
HphI	GGTGA	1 cut(s)	306
Hpy166II	GTNNAC	4 cut(s)	115, 190, 593, 743
Hpy188I	TCNGA	5 cut(s)	16, 126, 469, 474, 559
Hpy188III	TCNNGA	5 cut(s)	43, 53, 380, 578, 692
Hpy8I	GTNNAC	4 cut(s)	115, 190, 593, 743
HpyAV	CCTTC	1 cut(s)	238
HpyCH4V	TGCA	4 cut(s)	263, 287, 502, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	5 cut(s)	56, 480, 508, 647, 721
HspAI	GCGC	1 cut(s)	641
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	126, 163, 462, 469
LmnI	GCTCC	1 cut(s)	717
LweI	GCATC	3 cut(s)	250, 400, 563
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	204, 333
MalI	GATC	4 cut(s)	128, 165, 464, 471
MboI	GATC	4 cut(s)	126, 163, 462, 469
MboII	GAAGA	2 cut(s)	352, 539
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	25, 56, 72, 120, 608
MlyI	GAGTC	2 cut(s)	503, 598
MnlI	CCTC	3 cut(s)	146, 574, 765
MroNI	GCCGGC	1 cut(s)	107
MseI	TTAA	2 cut(s)	210, 426
MspA1I	CMGCKG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	3 cut(s)	108, 518, 551
MspR9I	CCNGG	2 cut(s)	238, 518
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	707
MwoI	GCNNNNNNNGC	1 cut(s)	108
NaeI	GCCGGC	1 cut(s)	109
NciI	CCSGG	1 cut(s)	518
NdeII	GATC	4 cut(s)	126, 163, 462, 469
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	5 cut(s)	56, 480, 508, 647, 721
NlaIV	GGNNCC	2 cut(s)	95, 713
NsbI	TGCGCA	1 cut(s)	642
NspI	RCATGY	2 cut(s)	480, 647
PaeI	GCATGC	1 cut(s)	647
PagI	TCATGA	1 cut(s)	52
PciI	ACATGT	1 cut(s)	476
PdiI	GCCGGC	1 cut(s)	109
PfeI	GAWTC	3 cut(s)	547, 560, 721
PleI	GAGTC	2 cut(s)	502, 597
PpsI	GAGTC	2 cut(s)	502, 597
PscI	ACATGT	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	95, 713
PsuI	RGATCY	1 cut(s)	469
SalI	GTCGAC	1 cut(s)	741
SaqAI	TTAA	2 cut(s)	210, 426
Sau3AI	GATC	4 cut(s)	126, 163, 462, 469
SchI	GAGTC	2 cut(s)	503, 598
ScrFI	CCNGG	2 cut(s)	238, 518
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	250, 400, 563
SmlI	CTYRAG	2 cut(s)	209, 221
SmoI	CTYRAG	2 cut(s)	209, 221
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	5 cut(s)	25, 56, 72, 120, 608
SsiI	CCGC	2 cut(s)	229, 491
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	2 cut(s)	236, 516
StyI	CCWWGG	1 cut(s)	318
TaqI	TCGA	3 cut(s)	42, 691, 742
TasI	AATT	5 cut(s)	25, 56, 72, 120, 608
TfiI	GAWTC	3 cut(s)	547, 560, 721
Tru1I	TTAA	2 cut(s)	210, 426
Tru9I	TTAA	2 cut(s)	210, 426
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	6 cut(s)	69, 521, 540, 556, 621, 734
TspGWI	ACGGA	2 cut(s)	164, 352
TspRI	CASTG	1 cut(s)	259
Vha464I	CTTAAG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	2 cut(s)	480, 647
XmiI	GTMKAC	1 cut(s)	742
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.