Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001809.1

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Reverse (-)

315179 .. 315676

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001809.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggagagatttgctaggtatcaaagggtcatagctgggtctcccagggaagcgaacaagttacggagcaagttgggtaggtaccttaccacaactgtgggaattcaccaagatgtgcaaccgtttgttattgaacaaatattggaaacgctcgaagaagccgcccccgataaacttatggaggtgctaatcagggaaatgatatttagagatacggaggagtccttgcggttgcacttggacgaaatataccacagggccaagctgattcctgctccgaaatcattcatcgagtctctggaggaagtgagactacttaatgatggtgataatctggaattgcttggattagagtgtcctatttgtatgcaggtgtttgcagataccagcattactcggttgccatgctcacactattatcatcgagattgcattgtccagtggctccagatcaatcatgtctgccccacttgtcgacaccctaatgctccgagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

165

Amino Acids

19.17

Weight (kDa)

5.8

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	1 cut(s)	361
Acc65I	GGTACC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	475
AciI	CCGC	2 cut(s)	162, 229
AcsI	RAATTY	1 cut(s)	102
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	44
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	2 cut(s)	35, 265
AluI	AGCT	2 cut(s)	35, 265
Alw26I	GTCTC	3 cut(s)	45, 300, 304
AoxI	GGCC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	284
Asp718I	GGTACC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	98, 338
BanI	GGYRCC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	45, 300, 304
BfaI	CTAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	2 cut(s)	83, 446
BmrFI	CCNGG	1 cut(s)	46
BpmI	CTGGAG	2 cut(s)	320, 431
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	44, 45
Bse1I	ACTGG	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	2 cut(s)	44, 45
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	1 cut(s)	233
BseYI	CCCAGC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	260
BshNI	GGYRCC	1 cut(s)	81
BsmAI	GTCTC	3 cut(s)	45, 300, 304
BsnI	GGCC	1 cut(s)	260
Bso31I	GGTCTC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	450
BspACI	CCGC	2 cut(s)	162, 229
BspANI	GGCC	1 cut(s)	260
BspLI	GGNNCC	2 cut(s)	83, 446
BspMI	ACCTGC	1 cut(s)	361
BspT107I	GGYRCC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	44, 45
BssMI	GATC	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	97, 123
BstKTI	GATC	1 cut(s)	453
BstMAI	GTCTC	3 cut(s)	45, 300, 304
BstMBI	GATC	1 cut(s)	450
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	446
BveI	ACCTGC	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	2 cut(s)	405, 458
CviJI	RGCY	5 cut(s)	35, 161, 260, 265, 445
CviKI_1	RGCY	5 cut(s)	35, 161, 260, 265, 445
CviQI	GTAC	1 cut(s)	82
DpnI	GATC	1 cut(s)	452
DpnII	GATC	1 cut(s)	450
Eco31I	GGTCTC	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	44
FaeI	CATG	2 cut(s)	408, 461
FaiI	YATR	6 cut(s)	32, 179, 250, 368, 406, 459
FatI	CATG	2 cut(s)	404, 457
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	2 cut(s)	320, 431
HaeIII	GGCC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	408, 461
HincII	GTYRAC	1 cut(s)	476
HindII	GTYRAC	1 cut(s)	476
HinfI	GANTC	3 cut(s)	221, 268, 293
HphI	GGTGA	2 cut(s)	98, 338
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	2 cut(s)	279, 492
Hpy188III	TCNNGA	4 cut(s)	299, 335, 425, 448
Hpy8I	GTNNAC	1 cut(s)	476
HpyCH4III	ACNGT	2 cut(s)	97, 123
HpyCH4V	TGCA	5 cut(s)	118, 235, 370, 380, 432
Hsp92II	CATG	2 cut(s)	408, 461
KpnI	GGTACC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	450
LmnI	GCTCC	4 cut(s)	66, 280, 450, 493
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	1 cut(s)	452
MboI	GATC	1 cut(s)	450
MboII	GAAGA	1 cut(s)	167
MluCI	AATT	2 cut(s)	102, 338
MlyI	GAGTC	2 cut(s)	230, 302
MnlI	CCTC	3 cut(s)	175, 211, 295
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	3 cut(s)	95, 111, 483
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	450
NlaIII	CATG	2 cut(s)	408, 461
NlaIV	GGNNCC	2 cut(s)	83, 446
OliI	CACNNNNGTG	1 cut(s)	95
PaqCI	CACCTGC	1 cut(s)	361
PasI	CCCWGGG	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	2 cut(s)	229, 301
PpsI	GAGTC	2 cut(s)	229, 301
Psp6I	CCWGG	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	83, 446
PspPI	GGNCC	1 cut(s)	258
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	3 cut(s)	95, 111, 483
SalI	GTCGAC	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	450
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	2 cut(s)	230, 302
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	7 cut(s)	20, 37, 83, 87, 186, 267, 375
SmiMI	CAYNNNNRTG	3 cut(s)	95, 111, 483
Sse9I	AATT	2 cut(s)	102, 338
SsiI	CCGC	2 cut(s)	162, 229
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	97, 123
TaqI	TCGA	4 cut(s)	153, 291, 424, 475
TasI	AATT	2 cut(s)	102, 338
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	277
TspGWI	ACGGA	2 cut(s)	79, 230
TspRI	CASTG	1 cut(s)	446
XapI	RAATTY	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.