Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Reverse (-)

3724757 .. 3732812

Gene Structure 8056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1986 bp

ATGAGGAAGGAACATCGCAGACGGAGATCATCGAAATTGTCCCTTCACTCCCTCGACGAGTCCGTCACACCTCTCCACTTGCCCTTCTTTCTTTTTAAACAAATATCTCTCTCCCCCTCTATATCCTTTCTCCTTCTCTCAGCTCTTCACCACCAAGCCCATTTCTCAAATGGAGGCCTCCACCGCACTCTCCCGCATCGGCCTCGCCGGCCTCGCCGTCATGGGCCAGAACCTCGCCCTCAACATCGCCGAGAAAGGCTTCCCCATTTCCGTCTACAACCGCACCTCCTCCAAGGTCGACGAGACCGTCCACCGCGCCGCCACCGAGGGCGACCTCCCTCTCTCCGGCCAGTACACCCCCAAAGACTTCGTCCTCTCTCTCCAGCGCCCCCGATCCGTCATCATCCTCGTCAAGGCCGGCGCCCCCGTCGACCAGACCATCGCCGCCTTGTCCGCCTACATGGAGCCCGGCGACGCCATCATCGACGGCGGCAACGAGTGGTACGAGAACACCGAGCGCCGCATCCACGAGGCTTCCGCCAAGGGCCTCCTCTACCTCGGCATGGGCGTCTCCGGCGGCGAGGAAGGCGCTCGCCACGGCCCCAGCCTCATGCCCGGGGGTCCCACCAAGCCTACTCCAATGTCCAGGACATTCTCCACAAGGTCGCCGCCCAGGTCGAGGACGGGCCCTGCGTCACCTACATCGGCGAGGGCGGCTCCGGCAACTTCGTCAAGATGGTCCACAACGGGATCGAGTACGGCGACATGCAGCTCATTTCCGAGGCCTACGACGTGTTGAAGAACATCGGCGGCCTCTCCAACTCCGAGCTGGCGCAAATCTTCGAGGAGTGGAACAGGGGAGAGCTGGAGAGCTTCTTAGTCGAGATTACCGCCGATATTTTCAAGGTCAAGGACGATTTGGCCGACGGCTTTTTGGTCGACAAGTTGCTGGATAAGACTGGGATGAAGGGGACTGGCAAATGGACGGTTCAGCAGGCTGCTGAGCTGTCCGTGGCCGCTCCTACTATTGCGGCCTCGCTTGATTGTAGATTCTTGAGTGGGTTGAAGGAGGAGAGGGAGAGCGCCGAGGAGGCTTTGAAGGAAGCTGGTTTCAAGGAGGAGATTGGGAATGTGGTTAGTGGGATTGATAAGAAGAGGTTGATCGATGATGTGAGGCAGGCTTTGTATGCTTCCAAGATTTGTAGCTATGCTCAGGGGATGAACTTGTTGAGGGCTAAGAGTATGGAGAAGGGATGGAATTTGAATTTGGGGGAATTGGCTAGGATTTGGAAAGGAGGCTGTATCATAAGAGCGGTGTTCTTGGATAGGATTAAGAACGCGTACCAGAGGAATCAGGGTCTGCCTAACTTGATTGTTGATCCCGACTTTGCTAAGGAAATGGTGCAGAGGCAAGCCGCGTGGAGGAGAGTTGTGGGGTTGGCTGTGGCCGCTGGGATTAGTACTCCGGGAATGTGTGCTAGTTTGTCATACTTTGATACATATAGGCGTGGTAGGCTTCCGGCTAATCTCGTTCAGGCTCAAAGAGATTTGTTTGGAGCGCATACTTATGAGAGGGTTGATCGCCCCGGATCATTTCATACAGAGTGGACTAAACTTGCTCAGAAGAGTTCGGTACATTTCATTATAAACCATGGATGCAATGCACTTTCCCAGTCTTATATAGATTTTTTTCTCACATATGCAGATGTACCAGAAGGTTCTTTTATCATCTGGGCACACACTCCAATGTCAAATTTGTTTTCCTGTCTTTGGTTCAATGAGGTTGAGCGGTTTACTCCTTGGGATCAGCTAAGCCTCATTGCTCAACCACCAGACATTCTCGAAGACCTCAATGACGACGACGTCCTCTGCTTTGCCCAGCCCAAGTTAATCGTGGCTCCGATGGTGAACAACACCGAGGCATCTTCGGGAATCAAAGCACGACGAGACCGCCTTGGACGCGCCTTCTTCGCCTTGACCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

662

Amino Acids

75.53

Weight (kDa)

10.46

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
6PGD	PF00393	241 - 536	4.2e-124	6-phosphogluconate dehydrogenase, C-terminal domain
TOD1_MUCI70	PF04765	542 - 606	1.5e-17	TOD1/MUCI70, glycosyltransferase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1646
AasI	GACNNNNNNGTC	3 cut(s)	62, 306, 1862
AatII	GACGTC	1 cut(s)	1866
AccB1I	GGYRCC	1 cut(s)	420
AccBSI	CCGCTC	3 cut(s)	1019, 1313, 1789
AccI	GTMKAC	4 cut(s)	274, 298, 430, 939
AccII	CGCG	4 cut(s)	316, 1340, 1418, 1962
AclWI	GGATC	5 cut(s)	388, 758, 1373, 1597, 1812
AcoI	YGGCCR	4 cut(s)	347, 921, 1014, 1446
AcsI	RAATTY	3 cut(s)	1258, 1264, 1753
AcyI	GRCGYC	4 cut(s)	421, 475, 568, 1863
AfaI	GTAC	7 cut(s)	354, 504, 758, 1343, 1462, 1635, 1710
AfiI	CCNNNNNNNGG	6 cut(s)	345, 413, 563, 679, 1422, 1770
AflIII	ACRYGT	2 cut(s)	792, 1338
AgsI	TTSAA	7 cut(s)	799, 904, 1066, 1099, 1114, 1264, 1777
AjiI	CACGTC	1 cut(s)	793
AjnI	CCWGG	2 cut(s)	645, 672
AjuI	GAANNNNNNNTTGG	2 cut(s)	1250, 1282
AluBI	AGCT	9 cut(s)	143, 772, 829, 865, 873, 1006, 1106, 1206, 1810
AluI	AGCT	9 cut(s)	143, 772, 829, 865, 873, 1006, 1106, 1206, 1810
Alw26I	GTCTC	3 cut(s)	297, 575, 1941
AlwI	GGATC	5 cut(s)	388, 758, 1373, 1597, 1812
AlwNI	CAGNNNCTG	1 cut(s)	1360
Ama87I	CYCGRG	1 cut(s)	615
ApaI	GGGCCC	1 cut(s)	690
ApeKI	GCWGC	2 cut(s)	769, 998
ApoI	RAATTY	3 cut(s)	1258, 1264, 1753
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
Asp700I	GAANNNNTTC	1 cut(s)	258
AspLEI	GCGC	9 cut(s)	318, 388, 423, 520, 591, 835, 1085, 1561, 1964
AspS9I	GGNCC	7 cut(s)	224, 545, 600, 621, 686, 687, 739
AsuC2I	CCSGG	5 cut(s)	469, 616, 617, 1467, 1587
AsuHPI	GGTGA	3 cut(s)	140, 688, 1918
AvaI	CYCGRG	1 cut(s)	615
AvaII	GGWCC	2 cut(s)	621, 739
BaeGI	GKGCMC	2 cut(s)	690, 1738
BanI	GGYRCC	1 cut(s)	420
BanII	GRGCYC	2 cut(s)	469, 690
BauI	CACGAG	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	1851
BbvI	GCAGC	2 cut(s)	781, 985
BccI	CCATC	5 cut(s)	447, 486, 730, 1248, 1897
BceAI	ACGGC	5 cut(s)	201, 503, 614, 775, 943
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	2 cut(s)	647, 674
BcnI	CCSGG	5 cut(s)	469, 616, 617, 1467, 1587
BcoDI	GTCTC	3 cut(s)	297, 575, 1941
BfaI	CTAG	3 cut(s)	1281, 1479, 1984
BfoI	RGCGCY	5 cut(s)	389, 424, 521, 592, 1086
BglI	GCCNNNNNGGC	2 cut(s)	208, 1091
BlpI	GCTNAGC	2 cut(s)	1002, 1811
BmcAI	AGTACT	1 cut(s)	1462
Bme1390I	CCNGG	7 cut(s)	469, 616, 617, 647, 674, 1467, 1587
Bme18I	GGWCC	2 cut(s)	621, 739
BmeT110I	CYCGRG	1 cut(s)	615
BmgBI	CACGTC	1 cut(s)	793
BmgT120I	GGNCC	7 cut(s)	224, 545, 600, 621, 686, 687, 739
BmiI	GGNNCC	8 cut(s)	422, 466, 602, 622, 623, 688, 718, 1899
BmrFI	CCNGG	7 cut(s)	469, 616, 617, 647, 674, 1467, 1587
BmrI	ACTGGG	2 cut(s)	969, 1666
BmsI	GCATC	4 cut(s)	205, 532, 1646, 1931
BmuI	ACTGGG	2 cut(s)	969, 1666
BpiI	GAAGAC	1 cut(s)	1851
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpmI	CTGGAG	2 cut(s)	366, 887
Bpu10I	CCTNAGC	2 cut(s)	1212, 1392
Bpu1102I	GCTNAGC	2 cut(s)	1002, 1811
BpuEI	CTTGAG	1 cut(s)	1075
BpuMI	CCSGG	5 cut(s)	469, 616, 617, 1467, 1587
Bsa29I	ATCGAT	1 cut(s)	1164
BsaHI	GRCGYC	4 cut(s)	421, 475, 568, 1863
BsaI	GGTCTC	2 cut(s)	297, 1941
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	6 cut(s)	345, 413, 563, 679, 1422, 1770
Bse118I	RCCGGY	2 cut(s)	207, 417
Bse1I	ACTGG	4 cut(s)	350, 964, 979, 1672
Bse3DI	GCAATG	2 cut(s)	1666, 1818
BseBI	CCWGG	2 cut(s)	647, 674
BseCI	ATCGAT	1 cut(s)	1164
BseGI	GGATG	6 cut(s)	403, 523, 969, 1224, 1259, 1661
BseLI	CCNNNNNNNGG	6 cut(s)	345, 413, 563, 679, 1422, 1770
BseMI	GCAATG	2 cut(s)	1666, 1818
BseMII	CTCAG	4 cut(s)	153, 993, 1226, 1634
BseNI	ACTGG	4 cut(s)	350, 964, 979, 1672
BseRI	GAGGAG	7 cut(s)	278, 540, 860, 1085, 1103, 1133, 1438
BseSI	GKGCMC	2 cut(s)	690, 1738
BseXI	GCAGC	2 cut(s)	781, 985
BseYI	CCCAGC	3 cut(s)	603, 1451, 1878
BsgI	GTGCAG	1 cut(s)	1424
Bsh1236I	CGCG	4 cut(s)	316, 1340, 1418, 1962
BshNI	GGYRCC	1 cut(s)	420
BshVI	ATCGAT	1 cut(s)	1164
BsiHKCI	CYCGRG	1 cut(s)	615
BslFI	GGGAC	3 cut(s)	25, 607, 985
BslI	CCNNNNNNNGG	6 cut(s)	345, 413, 563, 679, 1422, 1770
BsmAI	GTCTC	3 cut(s)	297, 575, 1941
BsmBI	CGTCTC	1 cut(s)	575
BsmFI	GGGAC	3 cut(s)	25, 607, 985
Bso31I	GGTCTC	2 cut(s)	297, 1941
BsoBI	CYCGRG	1 cut(s)	615
Bsp120I	GGGCCC	1 cut(s)	686
Bsp1286I	GDGCHC	3 cut(s)	469, 690, 1738
Bsp143I	GATC	8 cut(s)	26, 393, 750, 1161, 1378, 1579, 1589, 1804
Bsp1720I	GCTNAGC	2 cut(s)	1002, 1811
Bsp19I	CCATGG	1 cut(s)	1651
BspCNI	CTCAG	4 cut(s)	152, 994, 1225, 1633
BspDI	ATCGAT	1 cut(s)	1164
BspFNI	CGCG	4 cut(s)	316, 1340, 1418, 1962
BspLI	GGNNCC	8 cut(s)	422, 466, 602, 622, 623, 688, 718, 1899
BspPI	GGATC	5 cut(s)	388, 758, 1373, 1597, 1812
BspQI	GCTCTTC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	420
BspTNI	GGTCTC	2 cut(s)	297, 1941
BsrBI	CCGCTC	3 cut(s)	1019, 1313, 1789
BsrDI	GCAATG	2 cut(s)	1666, 1818
BsrFI	RCCGGY	2 cut(s)	207, 417
BsrI	ACTGG	4 cut(s)	350, 964, 979, 1672
BssAI	RCCGGY	2 cut(s)	207, 417
BssMI	GATC	8 cut(s)	26, 393, 750, 1161, 1378, 1579, 1589, 1804
BssNI	GRCGYC	4 cut(s)	421, 475, 568, 1863
BssSI	CACGAG	1 cut(s)	528
BssT1I	CCWWGG	5 cut(s)	292, 541, 1651, 1799, 1954
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	2 cut(s)	647, 674
Bst4CI	ACNGT	2 cut(s)	308, 988
Bst6I	CTCTTC	3 cut(s)	150, 1148, 1619
BstACI	GRCGYC	4 cut(s)	421, 475, 568, 1863
BstC8I	GCNNGC	7 cut(s)	209, 419, 593, 831, 996, 1179, 1413
BstDEI	CTNAG	8 cut(s)	139, 877, 1002, 1212, 1236, 1392, 1620, 1811
BstDSI	CCRYGG	3 cut(s)	596, 1011, 1651
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	6 cut(s)	403, 523, 969, 1224, 1259, 1661
BstFNI	CGCG	4 cut(s)	316, 1340, 1418, 1962
BstH2I	RGCGCY	5 cut(s)	389, 424, 521, 592, 1086
BstHHI	GCGC	9 cut(s)	318, 388, 423, 520, 591, 835, 1085, 1561, 1964
BstKTI	GATC	8 cut(s)	29, 396, 753, 1164, 1381, 1582, 1592, 1807
BstMAI	GTCTC	3 cut(s)	297, 575, 1941
BstMBI	GATC	8 cut(s)	26, 393, 750, 1161, 1378, 1579, 1589, 1804
BstNI	CCWGG	2 cut(s)	647, 674
BstNSI	RCATGY	1 cut(s)	769
BstSCI	CCNGG	7 cut(s)	467, 614, 615, 645, 672, 1465, 1585
BstSLI	GKGCMC	2 cut(s)	690, 1738
BstUI	CGCG	4 cut(s)	316, 1340, 1418, 1962
BstV1I	GCAGC	2 cut(s)	781, 985
BstV2I	GAAGAC	1 cut(s)	1851
Bsu15I	ATCGAT	1 cut(s)	1164
BsuTUI	ATCGAT	1 cut(s)	1164
BtgI	CCRYGG	3 cut(s)	596, 1011, 1651
BtgZI	GCGATG	2 cut(s)	230, 425
BtrI	CACGTC	1 cut(s)	793
BtsCI	GGATG	6 cut(s)	403, 523, 969, 1224, 1259, 1661
Cac8I	GCNNGC	7 cut(s)	209, 419, 593, 831, 996, 1179, 1413
CaiI	CAGNNNCTG	1 cut(s)	1360
CfoI	GCGC	9 cut(s)	318, 388, 423, 520, 591, 835, 1085, 1561, 1964
Cfr10I	RCCGGY	2 cut(s)	207, 417
Cfr13I	GGNCC	7 cut(s)	224, 545, 600, 621, 686, 687, 739
Cfr9I	CCCGGG	1 cut(s)	615
ClaI	ATCGAT	1 cut(s)	1164
CseI	GACGC	4 cut(s)	483, 557, 682, 1968
Csp6I	GTAC	7 cut(s)	353, 503, 757, 1342, 1461, 1634, 1709
CspCI	CAANNNNNGTGG	2 cut(s)	1400, 1435
CviAII	CATG	6 cut(s)	221, 461, 563, 611, 766, 1652
CviQI	GTAC	7 cut(s)	353, 503, 757, 1342, 1461, 1634, 1709
DdeI	CTNAG	8 cut(s)	139, 877, 1002, 1212, 1236, 1392, 1620, 1811
DinI	GGCGCC	1 cut(s)	422
DpnI	GATC	8 cut(s)	28, 395, 752, 1163, 1380, 1581, 1591, 1806
DpnII	GATC	8 cut(s)	26, 393, 750, 1161, 1378, 1579, 1589, 1804
DraI	TTTAAA	1 cut(s)	97
DrdI	GACNNNNNNGTC	3 cut(s)	62, 306, 1862
DseDI	GACNNNNNNGTC	3 cut(s)	62, 306, 1862
EaeI	YGGCCR	4 cut(s)	347, 921, 1014, 1446
Eam1104I	CTCTTC	3 cut(s)	150, 1148, 1619
EarI	CTCTTC	3 cut(s)	150, 1148, 1619
EciI	GGCGGA	2 cut(s)	443, 527
Eco130I	CCWWGG	5 cut(s)	292, 541, 1651, 1799, 1954
Eco147I	AGGCCT	2 cut(s)	177, 785
Eco24I	GRGCYC	2 cut(s)	469, 690
Eco31I	GGTCTC	2 cut(s)	297, 1941
Eco47I	GGWCC	2 cut(s)	621, 739
Eco88I	CYCGRG	1 cut(s)	615
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoO109I	RGGNCCY	3 cut(s)	545, 621, 687
EcoRII	CCWGG	2 cut(s)	645, 672
EcoT14I	CCWWGG	5 cut(s)	292, 541, 1651, 1799, 1954
EcoT38I	GRGCYC	2 cut(s)	469, 690
EgeI	GGCGCC	1 cut(s)	422
EheI	GGCGCC	1 cut(s)	422
ErhI	CCWWGG	5 cut(s)	292, 541, 1651, 1799, 1954
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	6 cut(s)	224, 464, 566, 614, 769, 1655
FaqI	GGGAC	3 cut(s)	25, 607, 985
FatI	CATG	6 cut(s)	220, 460, 562, 610, 765, 1651
FauI	CCCGC	1 cut(s)	201
FauNDI	CATATG	1 cut(s)	1699
FblI	GTMKAC	4 cut(s)	274, 298, 430, 939
FokI	GGATG	6 cut(s)	390, 510, 976, 1231, 1266, 1668
FriOI	GRGCYC	2 cut(s)	469, 690
FspBI	CTAG	3 cut(s)	1281, 1479, 1984
GlaI	GCGC	9 cut(s)	317, 387, 422, 519, 590, 834, 1084, 1560, 1963
GsaI	CCCAGC	3 cut(s)	607, 1455, 1882
GsuI	CTGGAG	2 cut(s)	366, 887
HaeII	RGCGCY	5 cut(s)	389, 424, 521, 592, 1086
HgaI	GACGC	4 cut(s)	483, 557, 682, 1968
HhaI	GCGC	9 cut(s)	318, 388, 423, 520, 591, 835, 1085, 1561, 1964
Hin1I	GRCGYC	4 cut(s)	421, 475, 568, 1863
Hin1II	CATG	6 cut(s)	224, 464, 566, 614, 769, 1655
Hin6I	GCGC	9 cut(s)	316, 386, 421, 518, 589, 833, 1083, 1559, 1962
HinP1I	GCGC	9 cut(s)	316, 386, 421, 518, 589, 833, 1083, 1559, 1962
HincII	GTYRAC	3 cut(s)	299, 431, 940
HindII	GTYRAC	3 cut(s)	299, 431, 940
HinfI	GANTC	4 cut(s)	59, 1050, 1351, 1932
HphI	GGTGA	3 cut(s)	140, 688, 1918
Hpy188I	TCNGA	4 cut(s)	781, 826, 1623, 1902
Hpy188III	TCNNGA	6 cut(s)	733, 883, 1054, 1382, 1841, 1929
HpyCH4III	ACNGT	2 cut(s)	308, 988
HpyCH4IV	ACGT	2 cut(s)	792, 1863
HpyCH4V	TGCA	5 cut(s)	769, 1405, 1659, 1664, 1703
HpyF3I	CTNAG	8 cut(s)	139, 877, 1002, 1212, 1236, 1392, 1620, 1811
HpySE526I	ACGT	2 cut(s)	792, 1863
Hsp92I	GRCGYC	4 cut(s)	421, 475, 568, 1863
Hsp92II	CATG	6 cut(s)	224, 464, 566, 614, 769, 1655
HspAI	GCGC	9 cut(s)	316, 386, 421, 518, 589, 833, 1083, 1559, 1962
KasI	GGCGCC	1 cut(s)	420
KflI	GGGWCCC	1 cut(s)	621
KroI	GCCGGC	2 cut(s)	207, 417
KroNI	GCCGGC	2 cut(s)	209, 419
Kzo9I	GATC	8 cut(s)	26, 393, 750, 1161, 1378, 1579, 1589, 1804
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	5 cut(s)	464, 722, 1024, 1556, 1903
Lsp1109I	GCAGC	2 cut(s)	781, 985
LweI	GCATC	4 cut(s)	205, 532, 1646, 1931
MaeI	CTAG	3 cut(s)	1281, 1479, 1984
MaeII	ACGT	2 cut(s)	792, 1863
MaeIII	GTNAC	2 cut(s)	64, 694
MalI	GATC	8 cut(s)	28, 395, 752, 1163, 1380, 1581, 1591, 1806
MbiI	CCGCTC	3 cut(s)	1019, 1313, 1789
MboI	GATC	8 cut(s)	26, 393, 750, 1161, 1378, 1579, 1589, 1804
MboII	GAAGA	8 cut(s)	137, 811, 832, 1165, 1636, 1856, 1917, 1960
MhlI	GDGCHC	3 cut(s)	469, 690, 1738
MluCI	AATT	5 cut(s)	35, 1258, 1264, 1274, 1753
MluI	ACGCGT	1 cut(s)	1338
Mly113I	GGCGCC	1 cut(s)	421
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	843
MroNI	GCCGGC	2 cut(s)	207, 417
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	3 cut(s)	96, 1332, 1889
MslI	CAYNNNNRTG	2 cut(s)	1566, 1745
MspA1I	CMGCKG	1 cut(s)	1451
MspR9I	CCNGG	7 cut(s)	469, 616, 617, 647, 674, 1467, 1587
MvaI	CCWGG	2 cut(s)	647, 674
MvnI	CGCG	4 cut(s)	316, 1340, 1418, 1962
NaeI	GCCGGC	2 cut(s)	209, 419
NarI	GGCGCC	1 cut(s)	421
NciI	CCSGG	5 cut(s)	469, 616, 617, 1467, 1587
NcoI	CCATGG	1 cut(s)	1651
NdeI	CATATG	1 cut(s)	1699
NdeII	GATC	8 cut(s)	26, 393, 750, 1161, 1378, 1579, 1589, 1804
NgoMIV	GCCGGC	2 cut(s)	207, 417
NlaIII	CATG	6 cut(s)	224, 464, 566, 614, 769, 1655
NlaIV	GGNNCC	8 cut(s)	422, 466, 602, 622, 623, 688, 718, 1899
NmeAIII	GCCGAG	3 cut(s)	275, 538, 1111
NmuCI	GTSAC	2 cut(s)	64, 694
NspI	RCATGY	1 cut(s)	769
PceI	AGGCCT	2 cut(s)	177, 785
PciSI	GCTCTTC	1 cut(s)	150
PdiI	GCCGGC	2 cut(s)	209, 419
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	1050, 1351, 1932
PflFI	GACNNNGTC	2 cut(s)	369, 1862
PfoI	TCCNGGA	2 cut(s)	645, 1465
PleI	GAGTC	1 cut(s)	67
PluTI	GGCGCC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	1646
Psp5II	RGGWCCY	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	645, 672
PspFI	CCCAGC	3 cut(s)	603, 1451, 1878
PspGI	CCWGG	2 cut(s)	645, 672
PspN4I	GGNNCC	8 cut(s)	422, 466, 602, 622, 623, 688, 718, 1899
PspOMI	GGGCCC	1 cut(s)	686
PspPI	GGNCC	7 cut(s)	224, 545, 600, 621, 686, 687, 739
PspPPI	RGGWCCY	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	1360
PsyI	GACNNNGTC	2 cut(s)	369, 1862
RsaI	GTAC	7 cut(s)	354, 504, 758, 1343, 1462, 1635, 1710
RsaNI	GTAC	7 cut(s)	353, 503, 757, 1342, 1461, 1634, 1709
RseI	CAYNNNNRTG	2 cut(s)	1566, 1745
SalI	GTCGAC	3 cut(s)	297, 429, 938
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	96, 1332, 1889
Sau3AI	GATC	8 cut(s)	26, 393, 750, 1161, 1378, 1579, 1589, 1804
Sau96I	GGNCC	7 cut(s)	224, 545, 600, 621, 686, 687, 739
ScaI	AGTACT	1 cut(s)	1462
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	7 cut(s)	469, 616, 617, 647, 674, 1467, 1587
SduI	GDGCHC	3 cut(s)	469, 690, 1738
SfaNI	GCATC	4 cut(s)	205, 532, 1646, 1931
SfiI	GGCCNNNNNGGCC	1 cut(s)	208
SfoI	GGCGCC	1 cut(s)	422
SinI	GGWCC	2 cut(s)	621, 739
SmaI	CCCGGG	1 cut(s)	617
SmiMI	CAYNNNNRTG	2 cut(s)	1566, 1745
SmlI	CTYRAG	1 cut(s)	1054
SmoI	CTYRAG	1 cut(s)	1054
Sse9I	AATT	5 cut(s)	35, 1258, 1264, 1274, 1753
SseBI	AGGCCT	2 cut(s)	177, 785
SspDI	GGCGCC	1 cut(s)	420
SspMI	CTAG	3 cut(s)	1281, 1479, 1984
StuI	AGGCCT	2 cut(s)	177, 785
StyD4I	CCNGG	7 cut(s)	467, 614, 615, 645, 672, 1465, 1585
StyI	CCWWGG	5 cut(s)	292, 541, 1651, 1799, 1954
TaaI	ACNGT	2 cut(s)	308, 988
TaiI	ACGT	2 cut(s)	795, 1866
TasI	AATT	5 cut(s)	35, 1258, 1264, 1274, 1753
TatI	WGTACW	2 cut(s)	352, 1460
TfiI	GAWTC	3 cut(s)	1050, 1351, 1932
Tru1I	TTAA	3 cut(s)	96, 1332, 1889
Tru9I	TTAA	3 cut(s)	96, 1332, 1889
TseFI	GTSAC	2 cut(s)	64, 694
TseI	GCWGC	2 cut(s)	769, 998
Tsp45I	GTSAC	2 cut(s)	64, 694
TspDTI	ATGAA	4 cut(s)	980, 1235, 1586, 1630
TspGWI	ACGGA	5 cut(s)	37, 52, 260, 386, 1000
TspMI	CCCGGG	1 cut(s)	615
Tth111I	GACNNNGTC	2 cut(s)	369, 1862
VpaK11BI	GGWCC	2 cut(s)	621, 739
XagI	CCTNNNNNAGG	1 cut(s)	411
XapI	RAATTY	3 cut(s)	1258, 1264, 1753
XceI	RCATGY	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	3 cut(s)	167, 826, 1891
XmaI	CCCGGG	1 cut(s)	615
XmiI	GTMKAC	4 cut(s)	274, 298, 430, 939
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	3 cut(s)	1281, 1479, 1984
ZraI	GACGTC	1 cut(s)	1864
ZrmI	AGTACT	1 cut(s)	1462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.