Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Forward (+)

49872629 .. 49874283

Gene Structure 1655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0348500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAAATTAACAATGGCTACTTCAATGAGTACTAATTCTAATGCCTTTGTTTTTCCTCTAGCTTTCTGTTTAGTTGGGATATCTCAGCTGCTGCTTTGCTCAGGTGATGCTCCCAACTGTAATCCCAATTTGATTGAAGCCAGTGATAGGGACAGGCTCCAATTTGCTTTGAACTTGGAATTCTTGGAGACCGAGTTTTTCTTGTATGCTGCTCTTGGCAAAGGTCTAGATGCTATCAGTCCAAATTTAACCATAGGCGGCCCCCCTCCGATTGGTGCTCAGAAGGCGAATCTCGACCCTCTTGTTCGTCGTATCATCGAGGAATTCGGTTATCAAGAAGTTGGTCATATCAGATCAATTATTAGAAAAGAAGGAAGGTTTCCCAGGCCTTTGTTAGATCTCAGCCGTCAGAATTTCGCAAAACTAATGGATCGAGCAGTGGGTTTCACTCTGAACCCGCCATTCGATCCATATGCAAACTCACTTAATTATCTCTTGGCAACCTACACCATCCCTTATGTGGGATTAGTAGGTTATGTTGGCACAATTCCATACCTTAAAAACATGACATCTTGCAGATTGGCTGCATCACTTTTGGGGGTTGAGAGTGGACAAGATTCGGTCATACGTACATTTCTCTATCAGAGATCCTCTGAGAAGGTGCAGCCCTATAGCCTCACAGTGGCTGATTTTACAAACCGTATTTCTATGCTTAGGAACGATCTTGCAATGTGTGGGATCAAAGATGAAGGCATCATAGTGCCAGAGAAGCTTGGGGCGGAGAATCGGACGTCCAGTAACATCATATCGGCCGATCCTAACTCGCTTTCGTATGCAAGGACACCGCCGGAGATATTGAGGATTGTATATGCAAGTGGCAATGAATCACTGCCGGGCGGATTTTACCCTAAAGGTGCAAATGGGAATATTGCAAGGCGCTTCTTGAAGATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

318

Amino Acids

34.95

Weight (kDa)

8.52

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferritin_2	PF13668	48 - 215	3e-32	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	794
AciI	CCGC	5 cut(s)	258, 458, 779, 845, 897
AclWI	GGATC	5 cut(s)	438, 461, 642, 746, 809
AcoI	YGGCCR	1 cut(s)	810
AcsI	RAATTY	4 cut(s)	179, 244, 323, 412
AcyI	GRCGYC	1 cut(s)	791
AfaI	GTAC	2 cut(s)	31, 631
AfiI	CCNNNNNNNGG	5 cut(s)	147, 272, 520, 521, 682
AgsI	TTSAA	4 cut(s)	24, 137, 172, 946
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	3 cut(s)	62, 88, 772
AluI	AGCT	3 cut(s)	62, 88, 772
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	5 cut(s)	438, 461, 642, 746, 809
AlwNI	CAGNNNCTG	2 cut(s)	91, 686
AoxI	GGCC	3 cut(s)	259, 386, 810
ApeKI	GCWGC	5 cut(s)	88, 91, 209, 584, 664
ApoI	RAATTY	4 cut(s)	179, 244, 323, 412
AseI	ATTAAT	1 cut(s)	951
AspLEI	GCGC	1 cut(s)	939
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	894
AsuHPI	GGTGA	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	5 cut(s)	75, 78, 196, 571, 676
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	1 cut(s)	390
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	894
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	59, 227
BfmI	CTRYAG	1 cut(s)	670
BfoI	RGCGCY	1 cut(s)	940
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	6 cut(s)	89, 92, 210, 259, 585, 665
BlsI	GCNGC	6 cut(s)	90, 93, 211, 260, 586, 666
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	385, 894
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	158, 262
BmrFI	CCNGG	2 cut(s)	385, 894
BmsI	GCATC	4 cut(s)	97, 220, 596, 762
Bpu10I	CCTNAGC	2 cut(s)	100, 713
BpuMI	CCSGG	1 cut(s)	894
BsaAI	YACGTR	1 cut(s)	629
BsaHI	GRCGYC	1 cut(s)	791
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	5 cut(s)	147, 272, 520, 521, 682
Bse1I	ACTGG	2 cut(s)	141, 795
Bse3DI	GCAATG	2 cut(s)	735, 886
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	1 cut(s)	510
BseLI	CCNNNNNNNGG	5 cut(s)	147, 272, 520, 521, 682
BseMI	GCAATG	2 cut(s)	735, 886
BseMII	CTCAG	5 cut(s)	98, 114, 293, 415, 645
BseNI	ACTGG	2 cut(s)	141, 795
BseX3I	CGGCCG	1 cut(s)	810
BseXI	GCAGC	5 cut(s)	75, 78, 196, 571, 676
BsgI	GTGCAG	1 cut(s)	683
Bsh1285I	CGRYCG	1 cut(s)	813
BshFI	GGCC	3 cut(s)	261, 388, 812
BsiEI	CGRYCG	1 cut(s)	813
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	848, 893
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	5 cut(s)	147, 272, 520, 521, 682
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	261, 388, 812
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	8 cut(s)	353, 397, 430, 466, 647, 721, 738, 814
BspACI	CCGC	5 cut(s)	258, 458, 779, 845, 897
BspANI	GGCC	3 cut(s)	261, 388, 812
BspCNI	CTCAG	5 cut(s)	97, 113, 292, 414, 646
BspLI	GGNNCC	2 cut(s)	158, 262
BspPI	GGATC	5 cut(s)	438, 461, 642, 746, 809
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	2 cut(s)	735, 886
BsrI	ACTGG	2 cut(s)	141, 795
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	8 cut(s)	353, 397, 430, 466, 647, 721, 738, 814
BssNI	GRCGYC	1 cut(s)	791
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	3 cut(s)	119, 682, 701
BstACI	GRCGYC	1 cut(s)	791
BstBAI	YACGTR	1 cut(s)	629
BstDEI	CTNAG	6 cut(s)	84, 100, 279, 401, 654, 713
BstF5I	GGATG	1 cut(s)	510
BstH2I	RGCGCY	1 cut(s)	940
BstHHI	GCGC	1 cut(s)	939
BstKTI	GATC	8 cut(s)	356, 400, 433, 469, 650, 724, 741, 817
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	8 cut(s)	353, 397, 430, 466, 647, 721, 738, 814
BstMCI	CGRYCG	1 cut(s)	813
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 769
BstNI	CCWGG	1 cut(s)	385
BstSCI	CCNGG	2 cut(s)	383, 892
BstSFI	CTRYAG	1 cut(s)	670
BstSNI	TACGTA	1 cut(s)	629
BstV1I	GCAGC	5 cut(s)	75, 78, 196, 571, 676
BstX2I	RGATCY	2 cut(s)	397, 647
BstYI	RGATCY	2 cut(s)	397, 647
BstZI	CGGCCG	1 cut(s)	810
BsuRI	GGCC	3 cut(s)	261, 388, 812
BtsCI	GGATG	1 cut(s)	510
BtsI	GCAGTG	2 cut(s)	444, 887
BtsIMutI	CAGTG	4 cut(s)	148, 444, 687, 887
CaiI	CAGNNNCTG	2 cut(s)	91, 686
CfoI	GCGC	1 cut(s)	939
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	30, 630
CviAII	CATG	1 cut(s)	565
CviQI	GTAC	2 cut(s)	30, 630
DdeI	CTNAG	6 cut(s)	84, 100, 279, 401, 654, 713
DpnI	GATC	8 cut(s)	355, 399, 432, 468, 649, 723, 740, 816
DpnII	GATC	8 cut(s)	353, 397, 430, 466, 647, 721, 738, 814
EaeI	YGGCCR	1 cut(s)	810
EagI	CGGCCG	1 cut(s)	810
EciI	GGCGGA	2 cut(s)	794, 912
EclXI	CGGCCG	1 cut(s)	810
Eco105I	TACGTA	1 cut(s)	629
Eco147I	AGGCCT	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	81
Eco52I	CGGCCG	1 cut(s)	810
EcoRI	GAATTC	2 cut(s)	179, 323
EcoRII	CCWGG	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	81
FaeI	CATG	1 cut(s)	568
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	1 cut(s)	564
FauI	CCCGC	1 cut(s)	465
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	6 cut(s)	89, 92, 210, 259, 585, 665
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	6 cut(s)	89, 92, 210, 259, 585, 665
FspBI	CTAG	2 cut(s)	59, 227
GlaI	GCGC	1 cut(s)	938
GluI	GCNGC	6 cut(s)	89, 92, 210, 259, 585, 665
HaeII	RGCGCY	1 cut(s)	940
HaeIII	GGCC	3 cut(s)	261, 388, 812
HapII	CCGG	2 cut(s)	848, 893
HhaI	GCGC	1 cut(s)	939
Hin1I	GRCGYC	1 cut(s)	791
Hin1II	CATG	1 cut(s)	568
Hin6I	GCGC	1 cut(s)	937
HinP1I	GCGC	1 cut(s)	937
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	4 cut(s)	289, 617, 784, 884
HpaII	CCGG	2 cut(s)	848, 893
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	611
Hpy188I	TCNGA	8 cut(s)	270, 282, 353, 411, 453, 645, 655, 789
Hpy188III	TCNNGA	4 cut(s)	227, 293, 335, 943
Hpy8I	GTNNAC	1 cut(s)	611
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	5 cut(s)	277, 365, 369, 652, 743
HpyCH4III	ACNGT	3 cut(s)	119, 682, 701
HpyCH4IV	ACGT	2 cut(s)	628, 791
HpyCH4V	TGCA	9 cut(s)	476, 576, 587, 664, 728, 836, 872, 917, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 769
HpyF3I	CTNAG	6 cut(s)	84, 100, 279, 401, 654, 713
HpySE526I	ACGT	2 cut(s)	628, 791
Hsp92I	GRCGYC	1 cut(s)	791
Hsp92II	CATG	1 cut(s)	568
HspAI	GCGC	1 cut(s)	937
Kzo9I	GATC	8 cut(s)	353, 397, 430, 466, 647, 721, 738, 814
LmnI	GCTCC	2 cut(s)	115, 162
LpnPI	CCDG	9 cut(s)	87, 139, 154, 370, 397, 777, 808, 861, 906
Lsp1109I	GCAGC	5 cut(s)	75, 78, 196, 571, 676
LweI	GCATC	4 cut(s)	97, 220, 596, 762
MaeI	CTAG	2 cut(s)	59, 227
MaeII	ACGT	2 cut(s)	628, 791
MaeIII	GTNAC	1 cut(s)	797
MalI	GATC	8 cut(s)	355, 399, 432, 468, 649, 723, 740, 816
MboI	GATC	8 cut(s)	353, 397, 430, 466, 647, 721, 738, 814
MflI	RGATCY	2 cut(s)	397, 647
MhlI	GDGCHC	1 cut(s)	280
MnlI	CCTC	7 cut(s)	66, 276, 309, 313, 661, 686, 852
MseI	TTAA	6 cut(s)	8, 248, 486, 558, 951, 955
MslI	CAYNNNNRTG	1 cut(s)	758
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	2 cut(s)	848, 893
MspR9I	CCNGG	2 cut(s)	385, 894
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	2 cut(s)	284, 769
NciI	CCSGG	1 cut(s)	894
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	8 cut(s)	353, 397, 430, 466, 647, 721, 738, 814
NlaIII	CATG	1 cut(s)	568
NlaIV	GGNNCC	2 cut(s)	158, 262
PacI	TTAATTAA	1 cut(s)	955
PceI	AGGCCT	1 cut(s)	388
PfeI	GAWTC	4 cut(s)	289, 617, 784, 884
PkrI	GCNGC	6 cut(s)	90, 93, 211, 260, 586, 666
Ppu21I	YACGTR	1 cut(s)	629
PshBI	ATTAAT	1 cut(s)	951
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	158, 262
PspPI	GGNCC	1 cut(s)	260
PstNI	CAGNNNCTG	2 cut(s)	91, 686
PsuI	RGATCY	2 cut(s)	397, 647
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	2 cut(s)	31, 631
RsaNI	GTAC	2 cut(s)	30, 630
RseI	CAYNNNNRTG	1 cut(s)	758
SaqAI	TTAA	6 cut(s)	8, 248, 486, 558, 951, 955
SatI	GCNGC	6 cut(s)	89, 92, 210, 259, 585, 665
Sau3AI	GATC	8 cut(s)	353, 397, 430, 466, 647, 721, 738, 814
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	385, 894
SduI	GDGCHC	1 cut(s)	280
SfaNI	GCATC	4 cut(s)	97, 220, 596, 762
SfcI	CTRYAG	1 cut(s)	670
SmiMI	CAYNNNNRTG	1 cut(s)	758
SnaBI	TACGTA	1 cut(s)	629
SseBI	AGGCCT	1 cut(s)	388
SsiI	CCGC	5 cut(s)	258, 458, 779, 845, 897
SspI	AATATT	1 cut(s)	928
SspMI	CTAG	2 cut(s)	59, 227
StuI	AGGCCT	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	383, 892
TaaI	ACNGT	3 cut(s)	119, 682, 701
TaiI	ACGT	2 cut(s)	631, 794
TaqI	TCGA	4 cut(s)	294, 318, 433, 465
TaqII	GACCGA	2 cut(s)	206, 610
TatI	WGTACW	1 cut(s)	29
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	4 cut(s)	289, 617, 784, 884
Tru1I	TTAA	6 cut(s)	8, 248, 486, 558, 951, 955
Tru9I	TTAA	6 cut(s)	8, 248, 486, 558, 951, 955
TscAI	CASTG	4 cut(s)	148, 444, 687, 894
TseI	GCWGC	5 cut(s)	88, 91, 209, 584, 664
TspDTI	ATGAA	3 cut(s)	17, 762, 897
TspRI	CASTG	4 cut(s)	148, 444, 687, 894
VspI	ATTAAT	1 cut(s)	951
XapI	RAATTY	4 cut(s)	179, 244, 323, 412
XbaI	TCTAGA	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XspI	CTAG	2 cut(s)	59, 227
ZraI	GACGTC	1 cut(s)	792
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.