Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Forward (+)

66019679 .. 66020635

Gene Structure 957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG442900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACCAGTGAAAAAAGCAGTCCAACCATGACCACCCCCGTCACCGGAAGCCGTGAATCTCCGGATGAGAGACGCAATATTTCCACCGTAGTTTACCAAGACCATATAAACCGATCCTTCACAAGTAGCGCCGGCGTGGACGTACTTCCGATCAGATTCCGGCTCTTTAAGGTAACTGCTAACTATAATCCGATTCTCCACGATTATGATCTCGAAACTCCAATTCCCATATCTACACATGTATATTTGCTGCGGTTCTCGGCGGAGTGGCGGAGCTGGAATTCAAAGATAACGATGGAGAGGTTGGCTAGGTATCAAAGGACGATTGCTAAGTGTGGTTGGCAGATGGATAAGTTAGTAGACAAGCTGGCAAGGTATCTTTCTGATACCGTGGGTGTTGAAGAGGATCAGCACCCTTGTATTATTCTGAAAACTGTGGAGATGATTCAAGCCGCCGTCCACGACCGGGTTATCGATGTGCAGATGTCGGACATCACATTTATCGAACCGGAACCTGAACCGGAGGAGGAATCTGAACTGGAGGAGGAGTCTGAACCGGAGGAGGAGTCGGAACAAGAGGAGGAGTCTGAAACGGAGGAGGAGTCGGAACAAGAGGAGGAGTCTGAAACGGAGGAGGAGGATTCTGAACAGGAGGGATTCGAGGACTTGGACGACACATCGTACGGGGACAATCTGACTCCTGCATCTGAATCATTCATGGAGGATTTGAAGAAATTGAGAGTACTTGGTTCGGAATTGGAAATGCTTGGGCAGACGCCAAACTGTGCTATTTGTCTGGAGGTGCTTGCTGAAGAAGGATATGATGATCAACTGATCACCATTACTCGCTTGCCTTGCTTACACTATTATCATCGGGATTGCATTATCAAGTGGATGATGATCAATAATTTATGCCCAGTTTGTCGACGCCAGAATGTGGAAGCAGGGGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

318

Amino Acids

36.75

Weight (kDa)

4.31

Isoelectric Point (pI)

71.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	261 - 309	4.4e-11	Ring finger domain
zf-rbx1	PF12678	261 - 309	1.5e-06	RING-H2 zinc finger domain
zf-C3HC4	PF00097	262 - 308	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	262 - 308	8.2e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	937
AccI	GTMKAC	2 cut(s)	360, 925
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	4 cut(s)	253, 263, 271, 453
AclWI	GGATC	2 cut(s)	108, 414
AcsI	RAATTY	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	831
AcyI	GRCGYC	2 cut(s)	776, 928
AfaI	GTAC	3 cut(s)	144, 683, 744
AfiI	CCNNNNNNNGG	3 cut(s)	44, 466, 937
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	4 cut(s)	285, 401, 449, 730
AluBI	AGCT	2 cut(s)	276, 367
AluI	AGCT	2 cut(s)	276, 367
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	108, 414
Aor13HI	TCCGGA	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	467
AsuHPI	GGTGA	2 cut(s)	34, 829
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	2 cut(s)	289, 340
BceAI	ACGGC	2 cut(s)	36, 440
BclI	TGATCA	3 cut(s)	826, 834, 900
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	132
BisI	GCNGC	2 cut(s)	251, 453
BlsI	GCNGC	2 cut(s)	252, 454
BmcAI	AGTACT	1 cut(s)	744
Bme1390I	CCNGG	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	467
BmrI	ACTGGG	1 cut(s)	911
BmsI	GCATC	1 cut(s)	713
BmuI	ACTGGG	1 cut(s)	911
BpmI	CTGGAG	2 cut(s)	560, 818
BpuMI	CCSGG	1 cut(s)	467
Bsa29I	ATCGAT	1 cut(s)	474
BsaBI	GATNNNNATC	2 cut(s)	207, 899
BsaHI	GRCGYC	2 cut(s)	776, 928
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	5 cut(s)	44, 61, 508, 520, 556
BsaXI	ACNNNNNCTCC	6 cut(s)	533, 551, 563, 581, 587, 617
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 466, 937
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	3 cut(s)	6, 543, 917
Bse8I	GATNNNNATC	2 cut(s)	207, 899
BseAI	TCCGGA	1 cut(s)	61
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	70, 900
BseJI	GATNNNNATC	2 cut(s)	207, 899
BseLI	CCNNNNNNNGG	3 cut(s)	44, 466, 937
BseNI	ACTGG	3 cut(s)	6, 543, 917
BseXI	GCAGC	1 cut(s)	237
BsgI	GTGCAG	1 cut(s)	500
Bsh1285I	CGRYCG	1 cut(s)	466
BshVI	ATCGAT	1 cut(s)	474
BsiEI	CGRYCG	1 cut(s)	466
BsiSI	CCGG	8 cut(s)	45, 62, 132, 160, 466, 509, 521, 557
BsiWI	CGTACG	1 cut(s)	681
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	3 cut(s)	44, 466, 937
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	701
Bsp13I	TCCGGA	1 cut(s)	61
Bsp143I	GATC	7 cut(s)	113, 150, 208, 406, 826, 834, 900
BspACI	CCGC	4 cut(s)	253, 263, 271, 453
BspDI	ATCGAT	1 cut(s)	474
BspEI	TCCGGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	2 cut(s)	108, 414
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	3 cut(s)	6, 543, 917
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	7 cut(s)	113, 150, 208, 406, 826, 834, 900
BssNI	GRCGYC	2 cut(s)	776, 928
Bst4CI	ACNGT	4 cut(s)	88, 391, 436, 785
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	2 cut(s)	776, 928
BstC8I	GCNNGC	4 cut(s)	133, 369, 807, 851
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	70, 900
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	7 cut(s)	116, 153, 211, 409, 829, 837, 903
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	7 cut(s)	113, 150, 208, 406, 826, 834, 900
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	1 cut(s)	855
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	474
BsuTUI	ATCGAT	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	70, 900
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	4 cut(s)	133, 369, 807, 851
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	131
ClaI	ATCGAT	1 cut(s)	474
CseI	GACGC	3 cut(s)	81, 784, 936
Csp6I	GTAC	3 cut(s)	143, 682, 743
CviAII	CATG	3 cut(s)	28, 239, 718
CviJI	RGCY	6 cut(s)	51, 163, 276, 308, 367, 452
CviKI_1	RGCY	6 cut(s)	51, 163, 276, 308, 367, 452
CviQI	GTAC	3 cut(s)	143, 682, 743
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	7 cut(s)	115, 152, 210, 408, 828, 836, 902
DpnII	GATC	7 cut(s)	113, 150, 208, 406, 826, 834, 900
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
EciI	GGCGGA	2 cut(s)	278, 286
Eco57I	CTGAAG	1 cut(s)	831
EcoRI	GAATTC	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	3 cut(s)	31, 242, 721
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	3 cut(s)	27, 238, 717
FbaI	TGATCA	3 cut(s)	826, 834, 900
FblI	GTMKAC	2 cut(s)	360, 925
Fnu4HI	GCNGC	2 cut(s)	251, 453
FokI	GGATG	2 cut(s)	77, 907
Fsp4HI	GCNGC	2 cut(s)	251, 453
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	2 cut(s)	251, 453
GsuI	CTGGAG	2 cut(s)	560, 818
HaeII	RGCGCY	1 cut(s)	132
HapII	CCGG	8 cut(s)	45, 62, 132, 160, 466, 509, 521, 557
HgaI	GACGC	3 cut(s)	81, 784, 936
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	2 cut(s)	776, 928
Hin1II	CATG	3 cut(s)	31, 242, 721
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	926
HindII	GTYRAC	1 cut(s)	926
HpaII	CCGG	8 cut(s)	45, 62, 132, 160, 466, 509, 521, 557
HphI	GGTGA	2 cut(s)	34, 829
Hpy166II	GTNNAC	5 cut(s)	94, 139, 361, 460, 926
Hpy188III	TCNNGA	4 cut(s)	62, 212, 797, 875
Hpy8I	GTNNAC	5 cut(s)	94, 139, 361, 460, 926
Hpy99I	CGWCG	1 cut(s)	930
HpyAV	CCTTC	2 cut(s)	127, 809
HpyCH4III	ACNGT	4 cut(s)	88, 391, 436, 785
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	481, 704, 882
HpyF10VI	GCNNNNNNNGC	1 cut(s)	855
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	2 cut(s)	776, 928
Hsp92II	CATG	3 cut(s)	31, 242, 721
HspAI	GCGC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Ksp22I	TGATCA	3 cut(s)	826, 834, 900
Kzo9I	GATC	7 cut(s)	113, 150, 208, 406, 826, 834, 900
LmnI	GCTCC	1 cut(s)	273
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	1 cut(s)	713
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	40, 172
MalI	GATC	7 cut(s)	115, 152, 210, 408, 828, 836, 902
MboI	GATC	7 cut(s)	113, 150, 208, 406, 826, 834, 900
MboII	GAAGA	3 cut(s)	413, 742, 824
MluCI	AATT	5 cut(s)	222, 280, 734, 755, 907
MlyI	GAGTC	6 cut(s)	557, 575, 593, 611, 629, 691
MmeI	TCCRAC	4 cut(s)	47, 468, 549, 585
MreI	CGCCGGCG	1 cut(s)	131
MroI	TCCGGA	1 cut(s)	61
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	8 cut(s)	45, 62, 132, 160, 466, 509, 521, 557
MspR9I	CCNGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	1 cut(s)	855
NaeI	GCCGGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	467
NdeII	GATC	7 cut(s)	113, 150, 208, 406, 826, 834, 900
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	3 cut(s)	31, 242, 721
NlaIV	GGNNCC	1 cut(s)	513
NmeAIII	GCCGAG	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	242
PciI	ACATGT	1 cut(s)	238
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	8 cut(s)	56, 156, 193, 445, 530, 641, 657, 710
Pfl23II	CGTACG	1 cut(s)	681
PflMI	CCANNNNNTGG	1 cut(s)	937
PkrI	GCNGC	2 cut(s)	252, 454
PleI	GAGTC	6 cut(s)	556, 574, 592, 610, 628, 691
PpsI	GAGTC	6 cut(s)	556, 574, 592, 610, 628, 691
PscI	ACATGT	1 cut(s)	238
PspLI	CGTACG	1 cut(s)	681
PspN4I	GGNNCC	1 cut(s)	513
RsaI	GTAC	3 cut(s)	144, 683, 744
RsaNI	GTAC	3 cut(s)	143, 682, 743
RseI	CAYNNNNRTG	1 cut(s)	204
SalI	GTCGAC	1 cut(s)	924
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	251, 453
Sau3AI	GATC	7 cut(s)	113, 150, 208, 406, 826, 834, 900
ScaI	AGTACT	1 cut(s)	744
SchI	GAGTC	6 cut(s)	557, 575, 593, 611, 629, 691
ScrFI	CCNGG	1 cut(s)	467
SetI	ASST	9 cut(s)	144, 174, 278, 305, 314, 369, 377, 517, 804
SfaNI	GCATC	1 cut(s)	713
SgrAI	CRCCGGYG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	5 cut(s)	222, 280, 734, 755, 907
SsiI	CCGC	4 cut(s)	253, 263, 271, 453
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	465
TaaI	ACNGT	4 cut(s)	88, 391, 436, 785
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	5 cut(s)	213, 474, 504, 660, 925
TasI	AATT	5 cut(s)	222, 280, 734, 755, 907
TatI	WGTACW	1 cut(s)	742
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	8 cut(s)	56, 156, 193, 445, 530, 641, 657, 710
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	706
TspGWI	ACGGA	2 cut(s)	608, 644
TspRI	CASTG	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	937
XapI	RAATTY	1 cut(s)	280
XceI	RCATGY	1 cut(s)	242
XmiI	GTMKAC	2 cut(s)	360, 925
XspI	CTAG	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.