Rh6CG060600

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000672
Physical Location & Seq
Reverse (-)
6015736 .. 6018069
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG060600.1

Sequence Viewer

Length: 777 bp
ATGAGCAGCATCACCGATGAGAACCTTGAATTTGAATTTGTGGAGACAGGCATATTTGATACCATAGCCTATCAGGAAGTAACGAACAGCTGCTACAGAAGCGGCGCCGGCGTGGACATACTGGCGATCAGATTCTGCTTCTTCAAGGTAATTAAATACTGTAATAGGTTCGAAGAATTTGAGTTGGAACCAGGCGTTTTATTAGCTCGTCATGTACTTAAGTTGCGGATCTCGAGAGAGAGGAGGAGTTGTGATTCAAATAAAAGGATGGACAGGTTGGCTAGGTACAGAGGGATCATAGCTGGGTCTCCAAGGGAGAAGAGAAAGTTTAAGAGGAAGATGGTTAGGTATCTTTCAAGGATTGGAGCTCCGGAAGAAGAGCACGAGTCTATTATTGAAAAAATATTGGAGGAGCTTAAAGATGCTGTCCCCGACTTGATACTTGATGTGCACATTGCGAAATTCATAACTAGATACACGGCTGAGCATTTCTTCGACGACACACACTACAGGGCCAAGCTAATTCCTGCAACCGAGTCATTCATCCAGGGTTTGGAGAAAGTGACATCACTAGAGAGTTTTGGCGGACAGACTTGTGCTATTTGTATGGAGGCATTTGCTGCACATCATCATCTGAATCGGTTGCCCTGCTTGCACTCTTATCATCAACATTGCATTGTCCAGTGGCTCCATATCAATCACGTCTGCCCCATTTGTAGACACCCTTACCCTTATGCTACTGCCTCTGCCGAGCCATCAGACCCTAATCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

258

Amino Acids

29.92

Weight (kDa)

6.92

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 198 - 240 2.6e-11 Ring finger domain
zf-C3HC4_2 PF13923 199 - 239 7.8e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 553
AccI GTMKAC 1 cut(s) 718
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 3 cut(s) 102, 226, 585
AclWI GGATC 2 cut(s) 236, 302
AcsI RAATTY 4 cut(s) 29, 35, 176, 461
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 2 cut(s) 216, 287
AfiI CCNNNNNNNGG 1 cut(s) 553
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 6 cut(s) 29, 35, 145, 258, 357, 398
AjiI CACGTC 1 cut(s) 703
AjnI CCWGG 2 cut(s) 190, 546
AluBI AGCT 6 cut(s) 90, 206, 302, 368, 415, 520
AluI AGCT 6 cut(s) 90, 206, 302, 368, 415, 520
Alw21I GWGCWC 3 cut(s) 370, 384, 453
Alw26I GTCTC 2 cut(s) 38, 312
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 2 cut(s) 236, 302
AlwNI CAGNNNCTG 1 cut(s) 135
Ama87I CYCGRG 1 cut(s) 232
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 1 cut(s) 513
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 6, 90, 620
ApoI RAATTY 4 cut(s) 29, 35, 176, 461
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 513
AsuHPI GGTGA 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 171
AvaI CYCGRG 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 453
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 370
BauI CACGAG 1 cut(s) 383
Bbv12I GWGCWC 3 cut(s) 370, 384, 453
BbvI GCAGC 3 cut(s) 18, 77, 607
BccI CCATC 3 cut(s) 262, 334, 763
BceAI ACGGC 1 cut(s) 495
BciT130I CCWGG 2 cut(s) 192, 548
BcoDI GTCTC 2 cut(s) 38, 312
BfaI CTAG 3 cut(s) 282, 471, 572
BfmI CTRYAG 2 cut(s) 94, 508
BfoI RGCGCY 1 cut(s) 108
BfrI CTTAAG 1 cut(s) 218
BisI GCNGC 4 cut(s) 7, 91, 103, 621
BlpI GCTNAGC 1 cut(s) 483
BlsI GCNGC 4 cut(s) 8, 92, 104, 622
Bme1390I CCNGG 2 cut(s) 192, 548
BmeT110I CYCGRG 1 cut(s) 232
BmgBI CACGTC 1 cut(s) 703
BmgT120I GGNCC 1 cut(s) 513
BmiI GGNNCC 3 cut(s) 106, 189, 689
BmrFI CCNGG 2 cut(s) 192, 548
BmsI GCATC 2 cut(s) 18, 412
Bpu1102I GCTNAGC 1 cut(s) 483
Bpu14I TTCGAA 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 311, 547
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 126, 682
Bse3DI GCAATG 2 cut(s) 453, 670
BseAI TCCGGA 1 cut(s) 370
BseBI CCWGG 2 cut(s) 192, 548
BseDI CCNNGG 2 cut(s) 311, 547
BseGI GGATG 2 cut(s) 273, 543
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMI GCAATG 2 cut(s) 453, 670
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 2 cut(s) 126, 682
BseRI GAGGAG 3 cut(s) 256, 259, 425
BseSI GKGCMC 1 cut(s) 453
BseXI GCAGC 3 cut(s) 18, 77, 607
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 606
BshFI GGCC 1 cut(s) 515
BshNI GGYRCC 1 cut(s) 104
BsiHKAI GWGCWC 3 cut(s) 370, 384, 453
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 2 cut(s) 108, 371
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 2 cut(s) 38, 312
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 1 cut(s) 515
Bso31I GGTCTC 1 cut(s) 312
BsoBI CYCGRG 1 cut(s) 232
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 3 cut(s) 370, 384, 453
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 3 cut(s) 126, 228, 294
Bsp1720I GCTNAGC 1 cut(s) 483
BspACI CCGC 3 cut(s) 102, 226, 585
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 1 cut(s) 475
BspEI TCCGGA 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 106, 189, 689
BspPI GGATC 2 cut(s) 236, 302
BspQI GCTCTTC 1 cut(s) 372
BspT104I TTCGAA 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 104
BspTI CTTAAG 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 312
BsrDI GCAATG 2 cut(s) 453, 670
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 2 cut(s) 126, 682
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 311, 547
BssMI GATC 3 cut(s) 126, 228, 294
BssNI GRCGYC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 311
Bst2BI CACGAG 1 cut(s) 383
Bst2UI CCWGG 2 cut(s) 192, 548
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 2 cut(s) 314, 372
BstACI GRCGYC 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 620
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 109, 653
BstDEI CTNAG 1 cut(s) 483
BstF5I GGATG 2 cut(s) 273, 543
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 3 cut(s) 129, 231, 297
BstMAI GTCTC 2 cut(s) 38, 312
BstMBI GATC 3 cut(s) 126, 228, 294
BstMWI GCNNNNNNNGC 4 cut(s) 99, 108, 620, 652
BstNI CCWGG 2 cut(s) 192, 548
BstSCI CCNGG 2 cut(s) 190, 546
BstSFI CTRYAG 2 cut(s) 94, 508
BstSLI GKGCMC 1 cut(s) 453
BstV1I GCAGC 3 cut(s) 18, 77, 607
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BsuRI GGCC 1 cut(s) 515
BtrI CACGTC 1 cut(s) 703
BtsCI GGATG 2 cut(s) 273, 543
BtsIMutI CAGTG 1 cut(s) 689
Cac8I GCNNGC 2 cut(s) 109, 653
CaiI CAGNNNCTG 1 cut(s) 135
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 513
Csp6I GTAC 2 cut(s) 215, 286
CviAII CATG 1 cut(s) 212
CviQI GTAC 2 cut(s) 215, 286
DdeI CTNAG 1 cut(s) 483
DinI GGCGCC 1 cut(s) 106
DpnI GATC 3 cut(s) 128, 230, 296
DpnII GATC 3 cut(s) 126, 228, 294
Eam1104I CTCTTC 2 cut(s) 314, 372
EarI CTCTTC 2 cut(s) 314, 372
EciI GGCGGA 1 cut(s) 600
Ecl136II GAGCTC 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 370
Eco31I GGTCTC 1 cut(s) 312
Eco53kI GAGCTC 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 190, 546
EcoT14I CCWWGG 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 370
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 1 cut(s) 215
FaiI YATR 9 cut(s) 53, 65, 119, 213, 299, 467, 608, 693, 735
FaqI GGGAC 1 cut(s) 413
FatI CATG 1 cut(s) 211
FblI GTMKAC 1 cut(s) 718
Fnu4HI GCNGC 4 cut(s) 7, 91, 103, 621
FokI GGATG 2 cut(s) 280, 530
FriOI GRGCYC 1 cut(s) 370
Fsp4HI GCNGC 4 cut(s) 7, 91, 103, 621
FspBI CTAG 3 cut(s) 282, 471, 572
GlaI GCGC 1 cut(s) 106
GluI GCNGC 4 cut(s) 7, 91, 103, 621
GsaI CCCAGC 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 515
HapII CCGG 2 cut(s) 108, 371
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 5 cut(s) 132, 254, 386, 536, 637
HpaII CCGG 2 cut(s) 108, 371
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 3 cut(s) 115, 451, 719
Hpy188I TCNGA 3 cut(s) 131, 636, 760
Hpy188III TCNNGA 4 cut(s) 74, 232, 234, 371
Hpy8I GTNNAC 3 cut(s) 115, 451, 719
Hpy99I CGWCG 1 cut(s) 500
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 5 cut(s) 451, 530, 623, 655, 675
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 108, 620, 652
HpyF3I CTNAG 1 cut(s) 483
HpySE526I ACGT 1 cut(s) 702
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 1 cut(s) 105
KasI GGCGCC 1 cut(s) 104
Kpn2I TCCGGA 1 cut(s) 370
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 126, 228, 294
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 4 cut(s) 365, 373, 412, 693
Lsp1109I GCAGC 3 cut(s) 18, 77, 607
LweI GCATC 2 cut(s) 18, 412
MaeI CTAG 3 cut(s) 282, 471, 572
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 2 cut(s) 79, 562
MalI GATC 3 cut(s) 128, 230, 296
MboI GATC 3 cut(s) 126, 228, 294
MboII GAAGA 7 cut(s) 133, 185, 331, 349, 386, 389, 484
MfeI CAATTG 1 cut(s) 772
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 3 cut(s) 370, 384, 453
MluCI AATT 7 cut(s) 29, 35, 150, 176, 461, 522, 772
Mly113I GGCGCC 1 cut(s) 105
MlyI GAGTC 2 cut(s) 395, 545
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 7 cut(s) 234, 237, 284, 327, 403, 604, 754
MreI CGCCGGCG 1 cut(s) 107
MroI TCCGGA 1 cut(s) 370
MroNI GCCGGC 1 cut(s) 107
MseI TTAA 4 cut(s) 153, 219, 330, 417
MspA1I CMGCKG 1 cut(s) 90
MspCI CTTAAG 1 cut(s) 218
MspI CCGG 2 cut(s) 108, 371
MspR9I CCNGG 2 cut(s) 192, 548
MunI CAATTG 1 cut(s) 772
MvaI CCWGG 2 cut(s) 192, 548
MwoI GCNNNNNNNGC 4 cut(s) 99, 108, 620, 652
NaeI GCCGGC 1 cut(s) 109
NarI GGCGCC 1 cut(s) 105
NdeII GATC 3 cut(s) 126, 228, 294
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 3 cut(s) 106, 189, 689
NmeAIII GCCGAG 1 cut(s) 775
NmuCI GTSAC 1 cut(s) 562
NspV TTCGAA 1 cut(s) 171
PaeR7I CTCGAG 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 372
PdiI GCCGGC 1 cut(s) 109
PfeI GAWTC 3 cut(s) 132, 254, 637
PflMI CCANNNNNTGG 1 cut(s) 553
PkrI GCNGC 4 cut(s) 8, 92, 104, 622
PleI GAGTC 2 cut(s) 394, 544
PluTI GGCGCC 1 cut(s) 108
PpsI GAGTC 2 cut(s) 394, 544
Psp124BI GAGCTC 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 190, 546
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 2 cut(s) 190, 546
PspN4I GGNNCC 3 cut(s) 106, 189, 689
PspPI GGNCC 1 cut(s) 513
PsrI GAACNNNNNNTAC 2 cut(s) 77, 109
PstNI CAGNNNCTG 1 cut(s) 135
PsuI RGATCY 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 90
RsaI GTAC 2 cut(s) 216, 287
RsaNI GTAC 2 cut(s) 215, 286
SacI GAGCTC 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 4 cut(s) 153, 219, 330, 417
SatI GCNGC 4 cut(s) 7, 91, 103, 621
Sau3AI GATC 3 cut(s) 126, 228, 294
Sau96I GGNCC 1 cut(s) 513
SchI GAGTC 2 cut(s) 395, 545
ScrFI CCNGG 2 cut(s) 192, 548
SduI GDGCHC 3 cut(s) 370, 384, 453
SfaNI GCATC 2 cut(s) 18, 412
SfcI CTRYAG 2 cut(s) 94, 508
SfoI GGCGCC 1 cut(s) 106
Sfr274I CTCGAG 1 cut(s) 232
SfuI TTCGAA 1 cut(s) 171
SgrAI CRCCGGYG 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 232
SmlI CTYRAG 2 cut(s) 218, 232
SmoI CTYRAG 2 cut(s) 218, 232
Sse9I AATT 7 cut(s) 29, 35, 150, 176, 461, 522, 772
SsiI CCGC 3 cut(s) 102, 226, 585
SspDI GGCGCC 1 cut(s) 104
SspI AATATT 1 cut(s) 405
SspMI CTAG 3 cut(s) 282, 471, 572
SstI GAGCTC 1 cut(s) 370
StyD4I CCNGG 2 cut(s) 190, 546
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 1 cut(s) 705
TaqI TCGA 3 cut(s) 171, 233, 495
TasI AATT 7 cut(s) 29, 35, 150, 176, 461, 522, 772
TatI WGTACW 1 cut(s) 214
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 3 cut(s) 132, 254, 637
Tru1I TTAA 4 cut(s) 153, 219, 330, 417
Tru9I TTAA 4 cut(s) 153, 219, 330, 417
TscAI CASTG 1 cut(s) 689
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 3 cut(s) 6, 90, 620
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 2 cut(s) 454, 532
TspRI CASTG 1 cut(s) 689
Van91I CCANNNNNTGG 1 cut(s) 553
Vha464I CTTAAG 1 cut(s) 218
VneI GTGCAC 1 cut(s) 449
XapI RAATTY 4 cut(s) 29, 35, 176, 461
XhoI CTCGAG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 718
XspI CTAG 3 cut(s) 282, 471, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.