Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Forward (+)

26362771 .. 26363901

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTATATAATTCCAAGATGGGGGTGTCAGGGCCATCCAAGGCCTGTGAATGCCTCCGCCCCTGGGTACAAGAGGATCATAGGTGGGTCTCCGAGGGAAGCGAACAAGTTACGGAACAAGCTAGGCAGGTATCTCTCAACAGTTATGGGTCTTCCTGAAGATAAGCATTCGTTTGCTATAGTACAAATAATGGATATGCTTCAAGCAGCCGACCTCGATAAGATTATCGAGGTGTCGCTCGTCGATGTGATATTTAGAGACACGGAGGAGTCCTTGCACTTGGACCTGGACGAATTATACTACAGGGCAAAGCTGATTCCGGCAACTGAATCATTCATCCAGGCTTTGGAGGAAGTGAGTCCACCTGATGATGAATTAGTGTGTGCTATTTGTATGGAATTGTTTGCACAAAAAAATCATAACAGCATTATTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

146

Amino Acids

16.37

Weight (kDa)

5.16

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	117
AccB7I	CCANNNNNTGG	1 cut(s)	346
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	68, 183
AfiI	CCNNNNNNNGG	3 cut(s)	20, 63, 346
AgsI	TTSAA	1 cut(s)	203
AjnI	CCWGG	3 cut(s)	61, 285, 339
AluBI	AGCT	2 cut(s)	121, 313
AluI	AGCT	2 cut(s)	121, 313
Alw26I	GTCTC	2 cut(s)	93, 252
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	2 cut(s)	31, 41
ApeKI	GCWGC	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	31, 283
AvaII	GGWCC	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	2 cut(s)	12, 42
BciT130I	CCWGG	3 cut(s)	63, 287, 341
BcoDI	GTCTC	2 cut(s)	93, 252
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	2 cut(s)	177, 301
BfuAI	ACCTGC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	3 cut(s)	63, 287, 341
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	31, 283
BmrFI	CCNGG	3 cut(s)	63, 287, 341
BpiI	GAAGAC	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	4 cut(s)	38, 61, 62, 92
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 63, 346
BseBI	CCWGG	3 cut(s)	63, 287, 341
BseDI	CCNNGG	4 cut(s)	38, 61, 62, 92
BseGI	GGATG	2 cut(s)	34, 336
BseLI	CCNNNNNNNGG	3 cut(s)	20, 63, 346
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	218
BshFI	GGCC	2 cut(s)	33, 43
BsiSI	CCGG	1 cut(s)	320
BslI	CCNNNNNNNGG	3 cut(s)	20, 63, 346
BsmAI	GTCTC	2 cut(s)	93, 252
BsmI	GAATGC	2 cut(s)	55, 166
BsnI	GGCC	2 cut(s)	33, 43
Bso31I	GGTCTC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	2 cut(s)	33, 43
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	93
BssECI	CCNNGG	4 cut(s)	38, 61, 62, 92
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	3 cut(s)	63, 287, 341
Bst4CI	ACNGT	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	435
BstF5I	GGATG	2 cut(s)	34, 336
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	2 cut(s)	93, 252
BstMBI	GATC	1 cut(s)	75
BstNI	CCWGG	3 cut(s)	63, 287, 341
BstSCI	CCNGG	3 cut(s)	61, 285, 339
BstSFI	CTRYAG	2 cut(s)	177, 301
BstV1I	GCAGC	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	33, 43
BtsCI	GGATG	2 cut(s)	34, 336
BveI	ACCTGC	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	31, 283
Csp6I	GTAC	2 cut(s)	67, 182
CviJI	RGCY	6 cut(s)	33, 43, 121, 209, 313, 344
CviKI_1	RGCY	6 cut(s)	33, 43, 121, 209, 313, 344
CviQI	GTAC	2 cut(s)	67, 182
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	38
Eco147I	AGGCCT	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	177
EcoRII	CCWGG	3 cut(s)	61, 285, 339
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
FaiI	YATR	9 cut(s)	6, 8, 80, 146, 179, 197, 298, 395, 420
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	2 cut(s)	21, 323
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	33, 43
HapII	CCGG	1 cut(s)	320
HinfI	GANTC	4 cut(s)	269, 316, 329, 358
HpaII	CCGG	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	362
Hpy99I	CGWCG	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	2 cut(s)	277, 407
HpyF3I	CTNAG	1 cut(s)	435
Kzo9I	GATC	1 cut(s)	75
Lsp1109I	GCAGC	1 cut(s)	218
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	2 cut(s)	143, 170
MluCI	AATT	4 cut(s)	9, 293, 374, 398
MlyI	GAGTC	2 cut(s)	278, 367
MnlI	CCTC	7 cut(s)	64, 66, 87, 223, 224, 259, 343
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	3 cut(s)	63, 287, 341
Mva1269I	GAATGC	2 cut(s)	55, 166
MvaI	CCWGG	3 cut(s)	63, 287, 341
NdeII	GATC	1 cut(s)	75
PasI	CCCWGGG	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	43
PctI	GAATGC	2 cut(s)	55, 166
PfeI	GAWTC	2 cut(s)	316, 329
PflMI	CCANNNNNTGG	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	2 cut(s)	277, 366
PpsI	GAGTC	2 cut(s)	277, 366
Psp6I	CCWGG	3 cut(s)	61, 285, 339
PspGI	CCWGG	3 cut(s)	61, 285, 339
PspPI	GGNCC	2 cut(s)	31, 283
RsaI	GTAC	2 cut(s)	68, 183
RsaNI	GTAC	2 cut(s)	67, 182
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	2 cut(s)	31, 283
SchI	GAGTC	2 cut(s)	278, 367
ScrFI	CCNGG	3 cut(s)	63, 287, 341
SetI	ASST	8 cut(s)	85, 123, 131, 216, 234, 288, 315, 367
SfcI	CTRYAG	2 cut(s)	177, 301
SinI	GGWCC	1 cut(s)	283
Sse9I	AATT	4 cut(s)	9, 293, 374, 398
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	3 cut(s)	61, 285, 339
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	3 cut(s)	216, 228, 243
TasI	AATT	4 cut(s)	9, 293, 374, 398
TatI	WGTACW	1 cut(s)	181
TfiI	GAWTC	2 cut(s)	316, 329
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	325, 387
TspGWI	ACGGA	2 cut(s)	127, 278
Van91I	CCANNNNNTGG	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	283
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.