Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Reverse (-)

1684936 .. 1686748

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g02800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGCAGCATTTACCCGTATGCGAGACTTGAACATGGCAGCGTTGTTTATCAAAGCAGTGAAAACACCTACCGAAGCAGATCCCGCGTGGACGTAATTCCGATCAAAGTCCAGCGATGGAAGGCATATGCCAACTACAATCCAGAAACCCATCAGTATGATAAGGTAGAACCAATTGTGCAAGCCACAAACACTCTCAAGTTGCGGTTCTCGAGGGAGAAGGCGAGCGGCGATGCAAAGACGACCATGGAGAGATTTGCAAGGTACAAGAGGATCATAGATGGGTCTCCCAGGGAAGCCAACAAGTTACGGGACAAATTGCGTAGGTACGTTTACAACAAAGTCGGTGTTGCCGAAAATCAGCATCCGTTTATTATTGATCATATATTCAATGTGCTGCTTCGAGAAGCCGTCCCCGATAAGATTATCGAGGTTCGAACAGTGAATATAATATATAGATATACGGAGGAACGGCACCTGGAGTTGCTGTCGGAAGATGCAGATTATTTATACAAGGCCAAGCTGATTCCGTCAACTGAATCATTCATCGAGGCTTTAGAGGAAGCAGCGACTCCACCTGATGATGAATTACATTGTGCTATTTGTATGGAAATGTTTGCACTGAGAAAAGATAGCAGCATTACTCAGTTGCCCTGCTCACACTATTATCATCGAGATTGCATTGCCCCCTGGCTCCAAATCAATCATGTCTGTCCTACTTGTCGACACCCTAATGCTCCATTTAGGCCAGGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

253

Amino Acids

29.45

Weight (kDa)

8.43

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	198 - 242	4.3e-12	Ring finger domain
zf-C3HC4_2	PF13923	199 - 241	8.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	199 - 228	9.4e-08	RING-like zinc finger
zf-C3HC4	PF00097	199 - 241	1.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	202 - 242	8.2e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	474
AccBSI	CCGCTC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	724
AccII	CGCG	1 cut(s)	87
AciI	CCGC	3 cut(s)	85, 205, 228
AclWI	GGATC	2 cut(s)	75, 281
AfaI	GTAC	2 cut(s)	266, 329
AgsI	TTSAA	2 cut(s)	32, 391
AjnI	CCWGG	4 cut(s)	290, 477, 689, 748
AluBI	AGCT	2 cut(s)	523, 756
AluI	AGCT	2 cut(s)	523, 756
Alw26I	GTCTC	2 cut(s)	19, 291
AlwI	GGATC	2 cut(s)	75, 281
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	2 cut(s)	516, 746
ApeKI	GCWGC	5 cut(s)	6, 39, 397, 566, 636
AsuII	TTCGAA	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	474
BbvI	GCAGC	5 cut(s)	18, 51, 384, 578, 648
BccI	CCATC	3 cut(s)	111, 159, 275
BceAI	ACGGC	2 cut(s)	395, 488
BciT130I	CCWGG	4 cut(s)	292, 479, 691, 750
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	19, 291
BfaI	CTAG	1 cut(s)	757
BisI	GCNGC	6 cut(s)	7, 40, 229, 398, 567, 637
BlsI	GCNGC	6 cut(s)	8, 41, 230, 399, 568, 638
Bme1390I	CCNGG	4 cut(s)	292, 479, 691, 750
BmeT110I	CYCGRG	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	476, 695
BmrFI	CCNGG	4 cut(s)	292, 479, 691, 750
BmsI	GCATC	3 cut(s)	223, 373, 487
BpmI	CTGGAG	1 cut(s)	500
Bpu14I	TTCGAA	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	4 cut(s)	246, 290, 291, 689
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bse3DI	GCAATG	1 cut(s)	681
BseBI	CCWGG	4 cut(s)	292, 479, 691, 750
BseDI	CCNNGG	4 cut(s)	246, 290, 291, 689
BseGI	GGATG	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	614, 659
BseXI	GCAGC	5 cut(s)	18, 51, 384, 578, 648
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	518, 748
BshNI	GGYRCC	1 cut(s)	474
BsiHKCI	CYCGRG	1 cut(s)	211
BslFI	GGGAC	2 cut(s)	326, 398
BsmAI	GTCTC	2 cut(s)	19, 291
BsmFI	GGGAC	2 cut(s)	326, 398
BsnI	GGCC	2 cut(s)	518, 748
Bso31I	GGTCTC	1 cut(s)	291
BsoBI	CYCGRG	1 cut(s)	211
Bsp119I	TTCGAA	1 cut(s)	436
Bsp143I	GATC	4 cut(s)	80, 102, 273, 379
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	3 cut(s)	85, 205, 228
BspANI	GGCC	2 cut(s)	518, 748
BspCNI	CTCAG	2 cut(s)	615, 658
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	476, 695
BspPI	GGATC	2 cut(s)	75, 281
BspT104I	TTCGAA	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	474
BspTNI	GGTCTC	1 cut(s)	291
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	681
BssECI	CCNNGG	4 cut(s)	246, 290, 291, 689
BssMI	GATC	4 cut(s)	80, 102, 273, 379
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	4 cut(s)	292, 479, 691, 750
Bst4CI	ACNGT	1 cut(s)	442
BstBI	TTCGAA	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	183, 226
BstDEI	CTNAG	2 cut(s)	623, 645
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	4 cut(s)	83, 105, 276, 382
BstMAI	GTCTC	2 cut(s)	19, 291
BstMBI	GATC	4 cut(s)	80, 102, 273, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNI	CCWGG	4 cut(s)	292, 479, 691, 750
BstSCI	CCNGG	4 cut(s)	290, 477, 689, 748
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	5 cut(s)	18, 51, 384, 578, 648
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	518, 748
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	2 cut(s)	130, 246
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	3 cut(s)	64, 447, 620
Cac8I	GCNNGC	2 cut(s)	183, 226
Csp6I	GTAC	2 cut(s)	265, 328
CviAII	CATG	3 cut(s)	35, 247, 707
CviJI	RGCY	9 cut(s)	185, 299, 410, 518, 523, 554, 694, 748, 756
CviKI_1	RGCY	9 cut(s)	185, 299, 410, 518, 523, 554, 694, 748, 756
CviQI	GTAC	2 cut(s)	265, 328
DdeI	CTNAG	2 cut(s)	623, 645
DpnI	GATC	4 cut(s)	82, 104, 275, 381
DpnII	GATC	4 cut(s)	80, 102, 273, 379
Eco130I	CCWWGG	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	211
EcoRII	CCWGG	4 cut(s)	290, 477, 689, 748
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	3 cut(s)	38, 250, 710
FaqI	GGGAC	2 cut(s)	326, 398
FatI	CATG	3 cut(s)	34, 246, 706
FauI	CCCGC	1 cut(s)	92
FauNDI	CATATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	724
Fnu4HI	GCNGC	6 cut(s)	7, 40, 229, 398, 567, 637
FokI	GGATG	1 cut(s)	351
Fsp4HI	GCNGC	6 cut(s)	7, 40, 229, 398, 567, 637
FspBI	CTAG	1 cut(s)	757
GluI	GCNGC	6 cut(s)	7, 40, 229, 398, 567, 637
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	2 cut(s)	518, 748
Hin1II	CATG	3 cut(s)	38, 250, 710
HincII	GTYRAC	2 cut(s)	534, 725
HindII	GTYRAC	2 cut(s)	534, 725
HinfI	GANTC	3 cut(s)	526, 539, 571
Hpy166II	GTNNAC	4 cut(s)	91, 334, 534, 725
Hpy188I	TCNGA	2 cut(s)	102, 493
Hpy188III	TCNNGA	4 cut(s)	143, 211, 404, 674
Hpy8I	GTNNAC	4 cut(s)	91, 334, 534, 725
HpyAV	CCTTC	2 cut(s)	115, 214
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	2 cut(s)	93, 330
HpyCH4V	TGCA	6 cut(s)	181, 236, 260, 500, 620, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	2 cut(s)	623, 645
HpySE526I	ACGT	2 cut(s)	93, 330
Hsp92II	CATG	3 cut(s)	38, 250, 710
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	80, 102, 273, 379
LmnI	GCTCC	2 cut(s)	699, 742
Lsp1109I	GCAGC	5 cut(s)	18, 51, 384, 578, 648
LweI	GCATC	3 cut(s)	223, 373, 487
MaeI	CTAG	1 cut(s)	757
MaeII	ACGT	2 cut(s)	93, 330
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	4 cut(s)	82, 104, 275, 381
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	4 cut(s)	80, 102, 273, 379
MboII	GAAGA	1 cut(s)	506
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	1 cut(s)	80
MluCI	AATT	4 cut(s)	96, 174, 317, 587
MlyI	GAGTC	1 cut(s)	565
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	6 cut(s)	207, 264, 424, 460, 544, 553
MslI	CAYNNNNRTG	2 cut(s)	156, 732
MspR9I	CCNGG	4 cut(s)	292, 479, 691, 750
MunI	CAATTG	1 cut(s)	174
MvaI	CCWGG	4 cut(s)	292, 479, 691, 750
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	4 cut(s)	80, 102, 273, 379
NlaIII	CATG	3 cut(s)	38, 250, 710
NlaIV	GGNNCC	2 cut(s)	476, 695
NspV	TTCGAA	1 cut(s)	436
PaeR7I	CTCGAG	1 cut(s)	211
PasI	CCCWGGG	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	526, 539
PkrI	GCNGC	6 cut(s)	8, 41, 230, 399, 568, 638
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Psp6I	CCWGG	4 cut(s)	290, 477, 689, 748
PspGI	CCWGG	4 cut(s)	290, 477, 689, 748
PspN4I	GGNNCC	2 cut(s)	476, 695
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	2 cut(s)	266, 329
RsaNI	GTAC	2 cut(s)	265, 328
RseI	CAYNNNNRTG	2 cut(s)	156, 732
SalI	GTCGAC	1 cut(s)	723
SatI	GCNGC	6 cut(s)	7, 40, 229, 398, 567, 637
Sau3AI	GATC	4 cut(s)	80, 102, 273, 379
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	4 cut(s)	292, 479, 691, 750
SfaNI	GCATC	3 cut(s)	223, 373, 487
Sfr274I	CTCGAG	1 cut(s)	211
SfuI	TTCGAA	1 cut(s)	436
SlaI	CTCGAG	1 cut(s)	211
SmiMI	CAYNNNNRTG	2 cut(s)	156, 732
SmlI	CTYRAG	2 cut(s)	197, 211
SmoI	CTYRAG	2 cut(s)	197, 211
Sse9I	AATT	4 cut(s)	96, 174, 317, 587
SsiI	CCGC	3 cut(s)	85, 205, 228
SspMI	CTAG	1 cut(s)	757
StyD4I	CCNGG	4 cut(s)	290, 477, 689, 748
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	2 cut(s)	96, 333
TaqI	TCGA	7 cut(s)	212, 403, 429, 436, 549, 673, 724
TasI	AATT	4 cut(s)	96, 174, 317, 587
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	526, 539
TscAI	CASTG	3 cut(s)	64, 447, 627
TseI	GCWGC	5 cut(s)	6, 39, 397, 566, 636
TspDTI	ATGAA	2 cut(s)	535, 600
TspGWI	ACGGA	3 cut(s)	357, 479, 519
TspRI	CASTG	3 cut(s)	64, 447, 627
XhoI	CTCGAG	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	724
XspI	CTAG	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.