Rh6DG465500

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000672
Physical Location & Seq
Reverse (-)
63342412 .. 63343609
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG465500.1

Sequence Viewer

Length: 408 bp
ATGGCCACCATCTTTGAGAGACGTGAATTTACCACCGCCGTTTATCAAAGGTATGAAAACAGAACCTACCGAAGCAAATCCTGCGTGGACGTACTTCCGATCAAATTCTACCGGTGGAAGACATATTCAGACCATAACCCAGATATGCAAGTTTTTGACACTAAACCTCCAATTTTGTCATCTACAAAAGTTCTCAAGTTGCGGTTCTCGAGGGAGAGGGCAAGTGGAAATGCAAGGACAACGATGGAGAGACTTGCTAGGTATCAAAGGGTCATAGCTAGGTCTCCCAGGGAAGCAAACAAGTTACAGAACAAGTTGGCACCAAGCTCATATTTTATAGGGCGTTCACCTTTTGTGGTCATAGCTGTAGGCTACGCTTATTTTCCACTTAGAGGCTTGCCTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

135

Amino Acids

15.81

Weight (kDa)

10.45

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 319
AciI CCGC 2 cut(s) 36, 202
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 26, 104
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 392
AgeI ACCGGT 1 cut(s) 111
AjiI CACGTC 1 cut(s) 23
AjnI CCWGG 2 cut(s) 287, 400
AluBI AGCT 3 cut(s) 278, 327, 365
AluI AGCT 3 cut(s) 278, 327, 365
Alw26I GTCTC 3 cut(s) 13, 244, 288
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 26, 104
AsiGI ACCGGT 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 339
AvaI CYCGRG 1 cut(s) 208
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 125
BccI CCATC 2 cut(s) 17, 238
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 2 cut(s) 289, 402
BcoDI GTCTC 3 cut(s) 13, 244, 288
BfaI CTAG 2 cut(s) 258, 279
BfmI CTRYAG 1 cut(s) 366
Bme1390I CCNGG 2 cut(s) 289, 402
BmeT110I CYCGRG 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 2 cut(s) 289, 402
BpiI GAAGAC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 3 cut(s) 287, 288, 401
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse118I RCCGGY 1 cut(s) 111
BseBI CCWGG 2 cut(s) 289, 402
BseDI CCNNGG 3 cut(s) 287, 288, 401
BseLI CCNNNNNNNGG 1 cut(s) 392
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 319
BshTI ACCGGT 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 3 cut(s) 13, 244, 288
BsmBI CGTCTC 1 cut(s) 13
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 208
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 2 cut(s) 36, 202
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 3 cut(s) 287, 288, 401
BssMI GATC 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 289, 402
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 389
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 3 cut(s) 13, 244, 288
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 2 cut(s) 289, 402
BstSCI CCNGG 2 cut(s) 287, 400
BstSFI CTRYAG 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 125
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 398
Cfr10I RCCGGY 1 cut(s) 111
Csp6I GTAC 1 cut(s) 92
CspAI ACCGGT 1 cut(s) 111
CspCI CAANNNNNGTGG 1 cut(s) 30
CviJI RGCY 6 cut(s) 5, 278, 327, 365, 372, 396
CviKI_1 RGCY 6 cut(s) 5, 278, 327, 365, 372, 396
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 389
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 287, 400
Esp3I CGTCTC 1 cut(s) 13
FaiI YATR 8 cut(s) 54, 124, 135, 146, 275, 331, 338, 362
FspBI CTAG 2 cut(s) 258, 279
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 112
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 339
Hpy166II GTNNAC 2 cut(s) 88, 347
Hpy188I TCNGA 2 cut(s) 99, 130
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 2 cut(s) 88, 347
HpyCH4IV ACGT 2 cut(s) 22, 90
HpyCH4V TGCA 2 cut(s) 148, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 2 cut(s) 22, 90
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 6 cut(s) 94, 125, 153, 274, 301, 387
MaeI CTAG 2 cut(s) 258, 279
MaeII ACGT 2 cut(s) 22, 90
MaeIII GTNAC 1 cut(s) 303
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 26, 104, 171
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 177, 204, 210, 386
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 289, 402
MvaI CCWGG 2 cut(s) 289, 402
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 321
PaeR7I CTCGAG 1 cut(s) 208
PasI CCCWGGG 1 cut(s) 288
PinAI ACCGGT 1 cut(s) 111
Psp6I CCWGG 2 cut(s) 287, 400
PspGI CCWGG 2 cut(s) 287, 400
PspN4I GGNNCC 1 cut(s) 321
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
Sau3AI GATC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 289, 402
SfcI CTRYAG 1 cut(s) 366
Sfr274I CTCGAG 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 208
SmlI CTYRAG 2 cut(s) 194, 208
SmoI CTYRAG 2 cut(s) 194, 208
Sse9I AATT 3 cut(s) 26, 104, 171
SsiI CCGC 2 cut(s) 36, 202
SspMI CTAG 2 cut(s) 258, 279
StyD4I CCNGG 2 cut(s) 287, 400
TaiI ACGT 2 cut(s) 25, 93
TaqI TCGA 1 cut(s) 209
TasI AATT 3 cut(s) 26, 104, 171
TspDTI ATGAA 1 cut(s) 69
XapI RAATTY 2 cut(s) 26, 104
XhoI CTCGAG 1 cut(s) 208
XspI CTAG 2 cut(s) 258, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.