Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Reverse (-)

4471108 .. 4472317

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010804

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGACCACCATATTTGAGAGACGTGAATTTACCACCGCCGTTTATCAAAGGTATGAAAACAGAACCTACCGAAGCAAATCCTGCGTGGACGTACTTCCGATCAAATTCTACCGGTGGAAGGCATATTCAGACCATAACCCAGATATGCAAGTTTTTGACGCTAGAACTCCAATCTTGTTATCTAAAAAAGTTCTCAAGTTGCGGTTCTCGAGGGAGAGGGCAAGTGGAAATGCAAAGACAACGATCGAGAGACTTGCTAGGTATCAAAGGGTCATAGCTGGGTCTCCCAGGGAAGCAAACAAGTTACAGAACAAGTTGGGTAGGTACCTTACCACAACTTTGGGAATTCACGAAGATGAGCAACCGTTTATTATTGTAAAAATATTGGAAATGCTCCGAGAAGCCGTCCCCGATAAAATTATAGAAGTGCACTTGATAGAAATTACATTTACAAGTACGAATTGGTCCTTTCTGGGGCGGGGCTTCAACGAGGACGGGGAGGATATATACTACAGGGCTAAGCTGGTTCCTGCTCCGAAATCATTCATCGAGTCTCTGGAGGAAGAGCGCTGGGTTGTCAGGAGTGCTAGGAATTTGGCTAGGATTGCAACGCTGCTCGGATTACACCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

212

Amino Acids

24.76

Weight (kDa)

9.59

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	324
AciI	CCGC	3 cut(s)	36, 202, 478
AcsI	RAATTY	4 cut(s)	26, 104, 345, 592
AfaI	GTAC	3 cut(s)	93, 326, 457
AfeI	AGCGCT	1 cut(s)	569
AfiI	CCNNNNNNNGG	2 cut(s)	118, 474
AgeI	ACCGGT	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	487
AjiI	CACGTC	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	2 cut(s)	278, 523
AluI	AGCT	2 cut(s)	278, 523
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	4 cut(s)	13, 244, 288, 558
Alw44I	GTGCAC	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	208
Aor51HI	AGCGCT	1 cut(s)	569
ApaLI	GTGCAC	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	4 cut(s)	26, 104, 345, 592
AsiGI	ACCGGT	1 cut(s)	111
Asp700I	GAANNNNTTC	1 cut(s)	542
Asp718I	GGTACC	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	1 cut(s)	465
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	465
BaeGI	GKGCMC	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	600
BceAI	ACGGC	2 cut(s)	23, 389
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	4 cut(s)	13, 244, 288, 558
BfaI	CTAG	4 cut(s)	162, 258, 588, 600
BfmI	CTRYAG	1 cut(s)	511
BfoI	RGCGCY	1 cut(s)	571
BisI	GCNGC	1 cut(s)	614
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	615
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	465
BmeT110I	CYCGRG	1 cut(s)	208
BmgBI	CACGTC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	2 cut(s)	326, 528
BmrFI	CCNGG	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	578
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	287, 288
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 474
Bse118I	RCCGGY	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	287, 288
BseLI	CCNNNNNNNGG	2 cut(s)	118, 474
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	600
BseYI	CCCAGC	2 cut(s)	278, 570
Bsh1285I	CGRYCG	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	324
BshTI	ACCGGT	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	118, 474
BsmAI	GTCTC	4 cut(s)	13, 244, 288, 558
BsmBI	CGTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	99, 243
Bsp1720I	GCTNAGC	1 cut(s)	519
BspACI	CCGC	3 cut(s)	36, 202, 478
BspLI	GGNNCC	2 cut(s)	326, 528
BspQI	GCTCTTC	1 cut(s)	558
BspT107I	GGYRCC	1 cut(s)	324
BspTNI	GGTCTC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	287, 288
BssMI	GATC	2 cut(s)	99, 243
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	366
Bst6I	CTCTTC	1 cut(s)	558
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	519
BstH2I	RGCGCY	1 cut(s)	571
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	2 cut(s)	102, 246
BstMAI	GTCTC	4 cut(s)	13, 244, 288, 558
BstMBI	GATC	2 cut(s)	99, 243
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 605
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	511
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	600
BstXI	CCANNNNNNTGG	1 cut(s)	340
BtrI	CACGTC	1 cut(s)	23
CfoI	GCGC	1 cut(s)	570
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	465
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	3 cut(s)	92, 325, 456
CspAI	ACCGGT	1 cut(s)	111
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviJI	RGCY	6 cut(s)	278, 404, 483, 518, 523, 599
CviKI_1	RGCY	6 cut(s)	278, 404, 483, 518, 523, 599
CviQI	GTAC	3 cut(s)	92, 325, 456
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	2 cut(s)	101, 245
DpnII	GATC	2 cut(s)	99, 243
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco31I	GGTCTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	465
Eco47III	AGCGCT	1 cut(s)	569
Eco88I	CYCGRG	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	13
FaiI	YATR	9 cut(s)	11, 54, 124, 135, 146, 275, 422, 506, 508
FaqI	GGGAC	1 cut(s)	392
FauI	CCCGC	1 cut(s)	471
Fnu4HI	GCNGC	1 cut(s)	614
Fsp4HI	GCNGC	1 cut(s)	614
FspBI	CTAG	4 cut(s)	162, 258, 588, 600
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	1 cut(s)	614
GsaI	CCCAGC	2 cut(s)	282, 574
GsuI	CTGGAG	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	571
HapII	CCGG	1 cut(s)	112
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	570
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HinfI	GANTC	1 cut(s)	551
HpaII	CCGG	1 cut(s)	112
Hpy166II	GTNNAC	2 cut(s)	88, 430
Hpy188I	TCNGA	5 cut(s)	99, 130, 398, 537, 620
Hpy188III	TCNNGA	5 cut(s)	208, 247, 350, 557, 580
Hpy8I	GTNNAC	2 cut(s)	88, 430
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	2 cut(s)	22, 90
HpyCH4V	TGCA	4 cut(s)	148, 233, 430, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 605
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	2 cut(s)	22, 90
HspAI	GCGC	1 cut(s)	568
KpnI	GGTACC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	99, 243
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	2 cut(s)	399, 538
Lsp1109I	GCAGC	1 cut(s)	600
MaeI	CTAG	4 cut(s)	162, 258, 588, 600
MaeII	ACGT	2 cut(s)	22, 90
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	2 cut(s)	101, 245
MboI	GATC	2 cut(s)	99, 243
MboII	GAAGA	2 cut(s)	365, 575
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	7 cut(s)	26, 104, 345, 417, 441, 460, 592
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	5 cut(s)	204, 210, 484, 493, 553
MroXI	GAANNNNTTC	1 cut(s)	542
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	81, 605
NdeII	GATC	2 cut(s)	99, 243
NlaIV	GGNNCC	2 cut(s)	326, 528
PaeR7I	CTCGAG	1 cut(s)	208
PasI	CCCWGGG	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	542
PinAI	ACCGGT	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	615
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	287
PspFI	CCCAGC	2 cut(s)	278, 570
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	326, 528
PspPI	GGNCC	1 cut(s)	465
PvuI	CGATCG	1 cut(s)	246
RsaI	GTAC	3 cut(s)	93, 326, 457
RsaNI	GTAC	3 cut(s)	92, 325, 456
RseI	CAYNNNNRTG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	558
SatI	GCNGC	1 cut(s)	614
Sau3AI	GATC	2 cut(s)	99, 243
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	511
Sfr274I	CTCGAG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	465
SlaI	CTCGAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	3 cut(s)	194, 208, 629
SmoI	CTYRAG	3 cut(s)	194, 208, 629
Sse9I	AATT	7 cut(s)	26, 104, 345, 417, 441, 460, 592
SsiI	CCGC	3 cut(s)	36, 202, 478
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	4 cut(s)	162, 258, 588, 600
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	2 cut(s)	25, 93
TaqI	TCGA	3 cut(s)	209, 246, 549
TasI	AATT	7 cut(s)	26, 104, 345, 417, 441, 460, 592
TseI	GCWGC	1 cut(s)	613
TspDTI	ATGAA	2 cut(s)	69, 535
VneI	GTGCAC	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	465
XapI	RAATTY	4 cut(s)	26, 104, 345, 592
XhoI	CTCGAG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	4 cut(s)	162, 258, 588, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.