Rroxscaffold_7G00210990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000672
Physical Location & Seq
Forward (+)
61404001 .. 61410643
6643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210990.1

Sequence Viewer

Length: 705 bp
ATGGCCGATCCTCAATTTTCAGAGGCTTATAGTGAAAATTTAAATGATGCCTTACTAATTGCAAGATTTAAAAGAATTCTATCGGGGAGAAACCAAACAGCTGCTACGAAGCGGCGCCGGCATGGACATACGGCAACCAAATTCAGCTTCTTCAAGGTAATTAAATACTATAATAGATTTGAAGAATTTGAGTTGGAACCAGGCATTTTATTAGATCACCATGTACTTAAGTTTCAGATCTCCGAGAGAGGAGGAGTTGTGATTCAAATAAAAGGATGGACGGAGTTGGCTAGGTACGGAGGGATCATAGCTAGGTCTCCAAGGGAGAGAAGAAAGTTTAAGAGGAAGATGGTTAGGTATCTTTCAAGGATGGGAGCTCCGGAAGAGGAGAACGAGTCTATTGTTGAAAACATATTGGAAGAGCTTAAAGATGCTGTCCTCGACTTGATACTTGATGTGAACATTGCGAAATTCATAACTAGATACACGGCCAAGCATTTCTTCGACGACACACTACAGGGCCAAGCAAATTCCTGCAACCGAATCATTCATCTAGGGTTTGGAGAAAGTGACATCACTAGAGAGTTTTGGCGGACGGACTTGTGCTATTTGTATGGAGGCATTTGCTGCACATCATCATCCGAATTGGTTGCCACGCTTGCACTCTTATCATCAACATTGCATTGTCCGGTGGCTCCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.88

Weight (kDa)

8.77

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 379
AciI CCGC 2 cut(s) 112, 592
AclWI GGATC 2 cut(s) 2, 311
AcoI YGGCCR 2 cut(s) 3, 489
AcsI RAATTY 6 cut(s) 37, 75, 140, 185, 470, 529
AcyI GRCGYC 1 cut(s) 115
AfaI GTAC 2 cut(s) 225, 296
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 5 cut(s) 154, 182, 266, 366, 407
AjnI CCWGG 1 cut(s) 199
AjuI GAANNNNNNNTTGG 4 cut(s) 131, 163, 485, 517
AluBI AGCT 5 cut(s) 101, 147, 311, 377, 424
AluI AGCT 5 cut(s) 101, 147, 311, 377, 424
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 2 cut(s) 2, 311
Aor13HI TCCGGA 1 cut(s) 379
AoxI GGCC 3 cut(s) 3, 489, 520
ApeKI GCWGC 2 cut(s) 101, 627
ApoI RAATTY 6 cut(s) 37, 75, 140, 185, 470, 529
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 520
AsuHPI GGTGA 1 cut(s) 209
BanI GGYRCC 1 cut(s) 114
BanII GRGCYC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 2 cut(s) 88, 614
BccI CCATC 3 cut(s) 270, 343, 364
BceAI ACGGC 2 cut(s) 147, 504
BcgI CGANNNNNNTGC 2 cut(s) 632, 666
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 5 cut(s) 291, 312, 480, 554, 579
BfmI CTRYAG 1 cut(s) 515
BfoI RGCGCY 1 cut(s) 118
BfrI CTTAAG 1 cut(s) 227
BglII AGATCT 1 cut(s) 237
BisI GCNGC 3 cut(s) 102, 113, 628
BlsI GCNGC 3 cut(s) 103, 114, 629
Bme1390I CCNGG 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 520
BmiI GGNNCC 3 cut(s) 116, 198, 696
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 37, 421
BsaHI GRCGYC 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 320
BsaWI WCCGGW 2 cut(s) 379, 688
BsaXI ACNNNNNCTCC 4 cut(s) 243, 273, 380, 410
Bse118I RCCGGY 1 cut(s) 117
Bse3DI GCAATG 2 cut(s) 462, 677
BseAI TCCGGA 1 cut(s) 379
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 3 cut(s) 281, 375, 638
BseMI GCAATG 2 cut(s) 462, 677
BseRI GAGGAG 3 cut(s) 264, 267, 401
BseXI GCAGC 2 cut(s) 88, 614
BsgI GTGCAG 1 cut(s) 613
BshFI GGCC 3 cut(s) 5, 491, 522
BshNI GGYRCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 3 cut(s) 118, 380, 689
BsmAI GTCTC 1 cut(s) 321
BsnI GGCC 3 cut(s) 5, 491, 522
Bso31I GGTCTC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 379
Bsp13I TCCGGA 1 cut(s) 379
Bsp143I GATC 4 cut(s) 7, 214, 237, 303
BspACI CCGC 2 cut(s) 112, 592
BspANI GGCC 3 cut(s) 5, 491, 522
BspEI TCCGGA 1 cut(s) 379
BspLI GGNNCC 3 cut(s) 116, 198, 696
BspPI GGATC 2 cut(s) 2, 311
BspQI GCTCTTC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 114
BspTI CTTAAG 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 321
BsrDI GCAATG 2 cut(s) 462, 677
BsrFI RCCGGY 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 4 cut(s) 7, 214, 237, 303
BssNI GRCGYC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 201
Bst6I CTCTTC 2 cut(s) 378, 414
BstACI GRCGYC 1 cut(s) 115
BstAFI CTTAAG 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 627
BstC8I GCNNGC 2 cut(s) 119, 660
BstF5I GGATG 3 cut(s) 281, 375, 638
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 4 cut(s) 10, 217, 240, 306
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 4 cut(s) 7, 214, 237, 303
BstMWI GCNNNNNNNGC 3 cut(s) 118, 627, 659
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 515
BstV1I GCAGC 2 cut(s) 88, 614
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BsuRI GGCC 3 cut(s) 5, 491, 522
BtsCI GGATG 3 cut(s) 281, 375, 638
Cac8I GCNNGC 2 cut(s) 119, 660
CfoI GCGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 520
Csp6I GTAC 2 cut(s) 224, 295
CviAII CATG 2 cut(s) 122, 221
CviQI GTAC 2 cut(s) 224, 295
DinI GGCGCC 1 cut(s) 116
DpnI GATC 4 cut(s) 9, 216, 239, 305
DpnII GATC 4 cut(s) 7, 214, 237, 303
DraI TTTAAA 2 cut(s) 42, 70
EaeI YGGCCR 2 cut(s) 3, 489
Eam1104I CTCTTC 2 cut(s) 378, 414
EarI CTCTTC 2 cut(s) 378, 414
EciI GGCGGA 1 cut(s) 607
Ecl136II GAGCTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 321
Eco53kI GAGCTC 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 379
EgeI GGCGCC 1 cut(s) 116
EheI GGCGCC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 2 cut(s) 125, 224
FaiI YATR 9 cut(s) 30, 123, 129, 171, 222, 308, 413, 476, 615
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FatI CATG 2 cut(s) 121, 220
Fnu4HI GCNGC 3 cut(s) 102, 113, 628
FokI GGATG 3 cut(s) 288, 382, 625
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 3 cut(s) 102, 113, 628
FspBI CTAG 5 cut(s) 291, 312, 480, 554, 579
GlaI GCGC 1 cut(s) 116
GluI GCNGC 3 cut(s) 102, 113, 628
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 3 cut(s) 5, 491, 522
HapII CCGG 3 cut(s) 118, 380, 689
HhaI GCGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 2 cut(s) 125, 224
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 3 cut(s) 262, 395, 543
HpaII CCGG 3 cut(s) 118, 380, 689
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 4 cut(s) 22, 237, 244, 643
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 1 cut(s) 460
Hpy99I CGWCG 1 cut(s) 509
HpyCH4V TGCA 5 cut(s) 62, 537, 630, 662, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 627, 659
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 2 cut(s) 125, 224
HspAI GCGC 1 cut(s) 115
KasI GGCGCC 1 cut(s) 114
Kpn2I TCCGGA 1 cut(s) 379
KroI GCCGGC 1 cut(s) 117
KroNI GCCGGC 1 cut(s) 119
Kzo9I GATC 4 cut(s) 7, 214, 237, 303
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 3 cut(s) 374, 382, 700
LpnPI CCDG 6 cut(s) 131, 186, 213, 393, 503, 547
Lsp1109I GCAGC 2 cut(s) 88, 614
LweI GCATC 2 cut(s) 37, 421
MaeI CTAG 5 cut(s) 291, 312, 480, 554, 579
MaeIII GTNAC 1 cut(s) 569
MalI GATC 4 cut(s) 9, 216, 239, 305
MboI GATC 4 cut(s) 7, 214, 237, 303
MboII GAAGA 7 cut(s) 142, 194, 342, 358, 395, 431, 493
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 379
Mly113I GGCGCC 1 cut(s) 115
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 9 cut(s) 16, 21, 242, 245, 293, 336, 379, 449, 611
MroI TCCGGA 1 cut(s) 379
MroNI GCCGGC 1 cut(s) 117
MseI TTAA 7 cut(s) 41, 69, 162, 228, 339, 426, 703
MspA1I CMGCKG 1 cut(s) 101
MspCI CTTAAG 1 cut(s) 227
MspI CCGG 3 cut(s) 118, 380, 689
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 3 cut(s) 118, 627, 659
NaeI GCCGGC 1 cut(s) 119
NarI GGCGCC 1 cut(s) 115
NdeII GATC 4 cut(s) 7, 214, 237, 303
NgoMIV GCCGGC 1 cut(s) 117
NlaIII CATG 2 cut(s) 125, 224
NlaIV GGNNCC 3 cut(s) 116, 198, 696
NmuCI GTSAC 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 414
PdiI GCCGGC 1 cut(s) 119
PfeI GAWTC 2 cut(s) 262, 543
PkrI GCNGC 3 cut(s) 103, 114, 629
PleI GAGTC 1 cut(s) 403
PluTI GGCGCC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 403
Psp124BI GAGCTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 116, 198, 696
PspPI GGNCC 1 cut(s) 520
PsuI RGATCY 1 cut(s) 237
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 225, 296
RsaNI GTAC 2 cut(s) 224, 295
SacI GAGCTC 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 7 cut(s) 41, 69, 162, 228, 339, 426, 703
SatI GCNGC 3 cut(s) 102, 113, 628
Sau3AI GATC 4 cut(s) 7, 214, 237, 303
Sau96I GGNCC 1 cut(s) 520
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 1 cut(s) 379
SetI ASST 9 cut(s) 103, 149, 159, 296, 313, 317, 359, 379, 426
SfaNI GCATC 2 cut(s) 37, 421
SfcI CTRYAG 1 cut(s) 515
SfoI GGCGCC 1 cut(s) 116
SmiI ATTTAAAT 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SsiI CCGC 2 cut(s) 112, 592
SspDI GGCGCC 1 cut(s) 114
SspMI CTAG 5 cut(s) 291, 312, 480, 554, 579
SstI GAGCTC 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 1 cut(s) 320
SwaI ATTTAAAT 1 cut(s) 42
TaqI TCGA 2 cut(s) 441, 504
TatI WGTACW 1 cut(s) 223
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 2 cut(s) 262, 543
Tru1I TTAA 7 cut(s) 41, 69, 162, 228, 339, 426, 703
Tru9I TTAA 7 cut(s) 41, 69, 162, 228, 339, 426, 703
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 2 cut(s) 101, 627
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 2 cut(s) 463, 539
TspGWI ACGGA 3 cut(s) 296, 312, 611
Vha464I CTTAAG 1 cut(s) 227
XapI RAATTY 6 cut(s) 37, 75, 140, 185, 470, 529
XspI CTAG 5 cut(s) 291, 312, 480, 554, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.