Rh6AG457900

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000672
Physical Location & Seq
Reverse (-)
64145713 .. 64146012
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG457900.1

Sequence Viewer

Length: 300 bp
ATGACCACCACCGTCACCGGAAGCCGTGAATCTCCGGATGAGAGACGCAATATTTCCACCGTAGTTTACCAAGACCATATAAACCGATCCTTCACAAGCAGCGCCGGCGTGGACGTACTTCCGATCAGATTCCGGCTCTTTAAGGTAACTGCTAACTATAATCCGATTCTCCACGATTATGATCTCGAAACTCCAATTCCCATATCTACACATGTATATTTGCTGCGGTTCTCGGCGGAGTGGCGGAGCTGGAATTCAAAGATAACGATGGAGAGGTTGGCTAGGTATCAAAGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

99

Amino Acids

11.62

Weight (kDa)

9.59

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 3 cut(s) 226, 236, 244
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 253
AfaI GTAC 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 211
AgsI TTSAA 1 cut(s) 258
AluBI AGCT 2 cut(s) 249, 297
AluI AGCT 2 cut(s) 249, 297
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 1 cut(s) 81
Aor13HI TCCGGA 1 cut(s) 34
ApeKI GCWGC 2 cut(s) 99, 223
ApoI RAATTY 1 cut(s) 253
AspLEI GCGC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 7
BbvI GCAGC 2 cut(s) 111, 210
BccI CCATC 1 cut(s) 262
BceAI ACGGC 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 2 cut(s) 100, 224
BlsI GCNGC 2 cut(s) 101, 225
BsaBI GATNNNNATC 1 cut(s) 180
BsaWI WCCGGW 2 cut(s) 17, 34
Bse118I RCCGGY 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 180
BseAI TCCGGA 1 cut(s) 34
BseGI GGATG 1 cut(s) 43
BseJI GATNNNNATC 1 cut(s) 180
BseXI GCAGC 2 cut(s) 111, 210
BsiSI CCGG 4 cut(s) 18, 35, 105, 133
BsmAI GTCTC 1 cut(s) 37
BsmBI CGTCTC 1 cut(s) 37
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 3 cut(s) 86, 123, 181
BspACI CCGC 3 cut(s) 226, 236, 244
BspEI TCCGGA 1 cut(s) 34
BspPI GGATC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssMI GATC 3 cut(s) 86, 123, 181
Bst4CI ACNGT 2 cut(s) 13, 61
BstC8I GCNNGC 1 cut(s) 106
BstF5I GGATG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 89, 126, 184
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 3 cut(s) 86, 123, 181
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 215
BstV1I GCAGC 2 cut(s) 111, 210
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 106
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 104
CseI GACGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 116
CviAII CATG 1 cut(s) 212
CviJI RGCY 5 cut(s) 24, 136, 249, 281, 297
CviKI_1 RGCY 5 cut(s) 24, 136, 249, 281, 297
CviQI GTAC 1 cut(s) 116
DpnI GATC 3 cut(s) 88, 125, 183
DpnII GATC 3 cut(s) 86, 123, 181
EciI GGCGGA 2 cut(s) 251, 259
EcoRI GAATTC 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 1 cut(s) 215
FaiI YATR 7 cut(s) 78, 80, 159, 180, 203, 213, 217
FatI CATG 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 100, 224
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 100, 224
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 103
GluI GCNGC 2 cut(s) 100, 224
HaeII RGCGCY 1 cut(s) 105
HapII CCGG 4 cut(s) 18, 35, 105, 133
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 104
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 3 cut(s) 29, 129, 166
HpaII CCGG 4 cut(s) 18, 35, 105, 133
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 67, 112
Hpy188I TCNGA 3 cut(s) 123, 128, 165
Hpy188III TCNNGA 2 cut(s) 35, 185
Hpy8I GTNNAC 2 cut(s) 67, 112
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 13, 61
HpyCH4IV ACGT 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 1 cut(s) 102
Kpn2I TCCGGA 1 cut(s) 34
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 86, 123, 181
LmnI GCTCC 2 cut(s) 246, 294
LpnPI CCDG 5 cut(s) 31, 48, 118, 146, 235
Lsp1109I GCAGC 2 cut(s) 111, 210
MaeI CTAG 1 cut(s) 282
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 13, 145
MalI GATC 3 cut(s) 88, 125, 183
MboI GATC 3 cut(s) 86, 123, 181
MluCI AATT 2 cut(s) 195, 253
MnlI CCTC 1 cut(s) 267
MreI CGCCGGCG 1 cut(s) 104
MroI TCCGGA 1 cut(s) 34
MroNI GCCGGC 1 cut(s) 104
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 4 cut(s) 18, 35, 105, 133
MwoI GCNNNNNNNGC 1 cut(s) 105
NaeI GCCGGC 1 cut(s) 106
NdeII GATC 3 cut(s) 86, 123, 181
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 1 cut(s) 215
NmeAIII GCCGAG 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 13
NspI RCATGY 1 cut(s) 215
PciI ACATGT 1 cut(s) 211
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 3 cut(s) 29, 129, 166
PkrI GCNGC 2 cut(s) 101, 225
PscI ACATGT 1 cut(s) 211
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 100, 224
Sau3AI GATC 3 cut(s) 86, 123, 181
SetI ASST 6 cut(s) 117, 147, 251, 278, 287, 299
SgrAI CRCCGGYG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 2 cut(s) 195, 253
SsiI CCGC 3 cut(s) 226, 236, 244
SspI AATATT 1 cut(s) 52
SspMI CTAG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 13, 61
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 186
TasI AATT 2 cut(s) 195, 253
TfiI GAWTC 3 cut(s) 29, 129, 166
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 2 cut(s) 99, 223
Tsp45I GTSAC 1 cut(s) 13
XapI RAATTY 1 cut(s) 253
XceI RCATGY 1 cut(s) 215
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.