Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Forward (+)

4769103 .. 4770582

Gene Structure 1480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGTTGAAGAAATGTGTGAGCTTGCTAAAGGAAAGAGACTGAGCTTGAAGAGGAAAGAAACTGAGTTTGAAGAAGAAATTAATGAGAATCAATCCACCACGTTAGTCGCAGAAGCAACCATGACCACCACCGTCACCGGAAGCCGTGAATCTCCGGATGAGAGACGCAATATTTCCACCGTAGTTTACCAAGACCATATAAACCGATCCTTCACAAGCAGCGCCGGCGTGGACGTACTTCCGATCAGATTCCGGCTCTTTAAGGTAACTGCTAACTATAATCCGATTCTCCACGATTATGATCTCGAAACTCCAATTCCCATATCCACACATGTATATTTGCTGCGGTTCTCGGCGGAGTGGCGGAGCTGGAATTCAAAGATAACGATGGAGAGGTTGGCTAGGTATCAAAGGACGATTGCTAAGTGTGGTTGGCAGATGGATAAGTTAGTAGACAAGCTGGCAAGGTATCTTTCTGATACCGTGGGTGTTGAAGAGGATCAGCACCCTTGTATTATTCTGAAAACGGTGGAGATGATTCAAGCCGCCGTCCACGACCGGGTTATCGATGTGCAGATGTCGGACATCACATTTATCGAACCGGAACCTGAACCGGAGGAGGAGTCTGAACCGGAGGAGGAGTCGGAACAAGAGGAGGAGTCTGAAACGGAGGAGGAGGAGGAGGATTCTGAACAGGAGGGATTCGAGGACTTGGACGACACATCGTACGGGGACAATCTGACTCCTGCATCTGAATCATTCATGGAGGATTTGAAGAAATTGAGAGTACTTGGTTCGGAATTGGAAATGCTTGGGCAGACGCCAAACTGTGCTATTTGTCTGGAGGTGCTTGCTGAAGAAGGATATGCTGATCAACTGATCACCATTACTCGCTTGCCTTGCTTACACTATTATCATCGGGATTGCATTATCAAGTGGATGATGATCAATAATTTATGCCCAGTTTGTCGACGCCAGAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

328

Amino Acids

37.97

Weight (kDa)

4.49

Isoelectric Point (pI)

63.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	276 - 324	4.5e-11	Ring finger domain
zf-rbx1	PF12678	276 - 324	1.9e-06	RING-H2 zinc finger domain
zf-C3HC4	PF00097	277 - 323	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	277 - 323	4.9e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	453, 970
AccIII	TCCGGA	1 cut(s)	154
AciI	CCGC	4 cut(s)	346, 356, 364, 546
AclWI	GGATC	2 cut(s)	201, 507
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	876
AcyI	GRCGYC	2 cut(s)	821, 973
AfaI	GTAC	3 cut(s)	237, 728, 789
AfiI	CCNNNNNNNGG	1 cut(s)	559
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	7 cut(s)	8, 49, 71, 378, 494, 542, 775
AluBI	AGCT	4 cut(s)	22, 45, 369, 460
AluI	AGCT	4 cut(s)	22, 45, 369, 460
Alw26I	GTCTC	2 cut(s)	31, 157
AlwI	GGATC	2 cut(s)	201, 507
Aor13HI	TCCGGA	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	219, 343
ApoI	RAATTY	1 cut(s)	373
AseI	ATTAAT	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	560
AsuHPI	GGTGA	2 cut(s)	127, 874
BbvI	GCAGC	2 cut(s)	231, 330
BccI	CCATC	2 cut(s)	382, 433
BceAI	ACGGC	2 cut(s)	129, 533
BclI	TGATCA	3 cut(s)	871, 879, 945
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	2 cut(s)	31, 157
BfaI	CTAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	3 cut(s)	220, 344, 546
BlsI	GCNGC	3 cut(s)	221, 345, 547
BmcAI	AGTACT	1 cut(s)	789
Bme1390I	CCNGG	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	606
BmrFI	CCNGG	1 cut(s)	560
BmrI	ACTGGG	1 cut(s)	956
BmsI	GCATC	1 cut(s)	758
BmuI	ACTGGG	1 cut(s)	956
BpmI	CTGGAG	1 cut(s)	863
BpuMI	CCSGG	1 cut(s)	560
Bsa29I	ATCGAT	1 cut(s)	567
BsaBI	GATNNNNATC	2 cut(s)	300, 944
BsaHI	GRCGYC	2 cut(s)	821, 973
BsaJI	CCNNGG	1 cut(s)	483
BsaWI	WCCGGW	5 cut(s)	137, 154, 601, 613, 631
BsaXI	ACNNNNNCTCC	4 cut(s)	608, 626, 638, 656
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	962
Bse8I	GATNNNNATC	2 cut(s)	300, 944
BseAI	TCCGGA	1 cut(s)	154
BseCI	ATCGAT	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	2 cut(s)	163, 945
BseJI	GATNNNNATC	2 cut(s)	300, 944
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	2 cut(s)	32, 54
BseNI	ACTGG	1 cut(s)	962
BseXI	GCAGC	2 cut(s)	231, 330
BsgI	GTGCAG	1 cut(s)	593
Bsh1285I	CGRYCG	1 cut(s)	559
BshVI	ATCGAT	1 cut(s)	567
BsiEI	CGRYCG	1 cut(s)	559
BsiSI	CCGG	8 cut(s)	138, 155, 225, 253, 559, 602, 614, 632
BsiWI	CGTACG	1 cut(s)	726
BslFI	GGGAC	1 cut(s)	746
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	2 cut(s)	31, 157
BsmBI	CGTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	746
Bsp13I	TCCGGA	1 cut(s)	154
Bsp143I	GATC	7 cut(s)	206, 243, 301, 499, 871, 879, 945
BspACI	CCGC	4 cut(s)	346, 356, 364, 546
BspCNI	CTCAG	2 cut(s)	33, 55
BspDI	ATCGAT	1 cut(s)	567
BspEI	TCCGGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	606
BspPI	GGATC	2 cut(s)	201, 507
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	962
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	7 cut(s)	206, 243, 301, 499, 871, 879, 945
BssNI	GRCGYC	2 cut(s)	821, 973
Bst4CI	ACNGT	5 cut(s)	133, 181, 484, 529, 830
Bst6I	CTCTTC	2 cut(s)	44, 489
BstACI	GRCGYC	2 cut(s)	821, 973
BstC8I	GCNNGC	5 cut(s)	24, 226, 462, 852, 896
BstDEI	CTNAG	3 cut(s)	41, 63, 423
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	163, 945
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	7 cut(s)	209, 246, 304, 502, 874, 882, 948
BstMAI	GTCTC	2 cut(s)	31, 157
BstMBI	GATC	7 cut(s)	206, 243, 301, 499, 871, 879, 945
BstMCI	CGRYCG	1 cut(s)	559
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 900
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	558
BstV1I	GCAGC	2 cut(s)	231, 330
Bsu15I	ATCGAT	1 cut(s)	567
BsuTUI	ATCGAT	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	163, 945
Cac8I	GCNNGC	5 cut(s)	24, 226, 462, 852, 896
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	224
ClaI	ATCGAT	1 cut(s)	567
CseI	GACGC	3 cut(s)	174, 829, 981
Csp6I	GTAC	3 cut(s)	236, 727, 788
CviAII	CATG	3 cut(s)	121, 332, 763
CviJI	RGCY	8 cut(s)	22, 45, 144, 256, 369, 401, 460, 545
CviKI_1	RGCY	8 cut(s)	22, 45, 144, 256, 369, 401, 460, 545
CviQI	GTAC	3 cut(s)	236, 727, 788
DdeI	CTNAG	3 cut(s)	41, 63, 423
DpnI	GATC	7 cut(s)	208, 245, 303, 501, 873, 881, 947
DpnII	GATC	7 cut(s)	206, 243, 301, 499, 871, 879, 945
Eam1104I	CTCTTC	2 cut(s)	44, 489
EarI	CTCTTC	2 cut(s)	44, 489
EciI	GGCGGA	2 cut(s)	371, 379
Eco57I	CTGAAG	1 cut(s)	876
EcoRI	GAATTC	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	3 cut(s)	124, 335, 766
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	3 cut(s)	120, 331, 762
FbaI	TGATCA	3 cut(s)	871, 879, 945
FblI	GTMKAC	2 cut(s)	453, 970
Fnu4HI	GCNGC	3 cut(s)	220, 344, 546
FokI	GGATG	2 cut(s)	170, 952
Fsp4HI	GCNGC	3 cut(s)	220, 344, 546
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	3 cut(s)	220, 344, 546
GsuI	CTGGAG	1 cut(s)	863
HaeII	RGCGCY	1 cut(s)	225
HapII	CCGG	8 cut(s)	138, 155, 225, 253, 559, 602, 614, 632
HgaI	GACGC	3 cut(s)	174, 829, 981
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	2 cut(s)	821, 973
Hin1II	CATG	3 cut(s)	124, 335, 766
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	971
HindII	GTYRAC	1 cut(s)	971
HpaII	CCGG	8 cut(s)	138, 155, 225, 253, 559, 602, 614, 632
HphI	GGTGA	2 cut(s)	127, 874
Hpy166II	GTNNAC	5 cut(s)	187, 232, 454, 553, 971
Hpy188III	TCNNGA	4 cut(s)	155, 305, 842, 920
Hpy8I	GTNNAC	5 cut(s)	187, 232, 454, 553, 971
Hpy99I	CGWCG	1 cut(s)	975
HpyAV	CCTTC	2 cut(s)	220, 854
HpyCH4III	ACNGT	5 cut(s)	133, 181, 484, 529, 830
HpyCH4IV	ACGT	2 cut(s)	101, 234
HpyCH4V	TGCA	3 cut(s)	574, 749, 927
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 900
HpyF3I	CTNAG	3 cut(s)	41, 63, 423
HpySE526I	ACGT	2 cut(s)	101, 234
Hsp92I	GRCGYC	2 cut(s)	821, 973
Hsp92II	CATG	3 cut(s)	124, 335, 766
HspAI	GCGC	1 cut(s)	222
Kpn2I	TCCGGA	1 cut(s)	154
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	3 cut(s)	871, 879, 945
Kzo9I	GATC	7 cut(s)	206, 243, 301, 499, 871, 879, 945
LmnI	GCTCC	1 cut(s)	366
Lsp1109I	GCAGC	2 cut(s)	231, 330
LweI	GCATC	1 cut(s)	758
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	2 cut(s)	101, 234
MaeIII	GTNAC	2 cut(s)	133, 265
MalI	GATC	7 cut(s)	208, 245, 303, 501, 873, 881, 947
MboI	GATC	7 cut(s)	206, 243, 301, 499, 871, 879, 945
MboII	GAAGA	7 cut(s)	20, 61, 83, 86, 506, 787, 869
MluCI	AATT	6 cut(s)	78, 315, 373, 779, 800, 952
MlyI	GAGTC	4 cut(s)	632, 650, 668, 736
MmeI	TCCRAC	2 cut(s)	561, 624
MreI	CGCCGGCG	1 cut(s)	224
MroI	TCCGGA	1 cut(s)	154
MroNI	GCCGGC	1 cut(s)	224
MseI	TTAA	2 cut(s)	81, 261
MslI	CAYNNNNRTG	1 cut(s)	297
MspI	CCGG	8 cut(s)	138, 155, 225, 253, 559, 602, 614, 632
MspR9I	CCNGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	2 cut(s)	225, 900
NaeI	GCCGGC	1 cut(s)	226
NciI	CCSGG	1 cut(s)	560
NdeII	GATC	7 cut(s)	206, 243, 301, 499, 871, 879, 945
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	3 cut(s)	124, 335, 766
NlaIV	GGNNCC	1 cut(s)	606
NmeAIII	GCCGAG	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	335
PciI	ACATGT	1 cut(s)	331
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	8 cut(s)	88, 149, 249, 286, 538, 686, 702, 755
Pfl23II	CGTACG	1 cut(s)	726
PkrI	GCNGC	3 cut(s)	221, 345, 547
PleI	GAGTC	4 cut(s)	631, 649, 667, 736
PpsI	GAGTC	4 cut(s)	631, 649, 667, 736
PscI	ACATGT	1 cut(s)	331
PshBI	ATTAAT	1 cut(s)	81
PspLI	CGTACG	1 cut(s)	726
PspN4I	GGNNCC	1 cut(s)	606
RsaI	GTAC	3 cut(s)	237, 728, 789
RsaNI	GTAC	3 cut(s)	236, 727, 788
RseI	CAYNNNNRTG	1 cut(s)	297
SalI	GTCGAC	1 cut(s)	969
SaqAI	TTAA	2 cut(s)	81, 261
SatI	GCNGC	3 cut(s)	220, 344, 546
Sau3AI	GATC	7 cut(s)	206, 243, 301, 499, 871, 879, 945
ScaI	AGTACT	1 cut(s)	789
SchI	GAGTC	4 cut(s)	632, 650, 668, 736
ScrFI	CCNGG	1 cut(s)	560
SfaNI	GCATC	1 cut(s)	758
SgrAI	CRCCGGYG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	6 cut(s)	78, 315, 373, 779, 800, 952
SsiI	CCGC	4 cut(s)	346, 356, 364, 546
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	558
TaaI	ACNGT	5 cut(s)	133, 181, 484, 529, 830
TaiI	ACGT	2 cut(s)	104, 237
TaqI	TCGA	5 cut(s)	306, 567, 597, 705, 970
TasI	AATT	6 cut(s)	78, 315, 373, 779, 800, 952
TatI	WGTACW	1 cut(s)	787
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	8 cut(s)	88, 149, 249, 286, 538, 686, 702, 755
Tru1I	TTAA	2 cut(s)	81, 261
Tru9I	TTAA	2 cut(s)	81, 261
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	219, 343
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	751
TspGWI	ACGGA	1 cut(s)	683
VspI	ATTAAT	1 cut(s)	81
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	1 cut(s)	335
XmiI	GTMKAC	2 cut(s)	453, 970
XspI	CTAG	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.