Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Reverse (-)

2367822 .. 2369269

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g04371.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATGGAATCAGAGGAGAAGGAGAAGATCGAGAGAGAGAAAGGAGGTGGACCACGTCATCGGAATCGGTTTGACCTTCGCGTTGATGAGATGCAGTCGAGGCCGAAACGGAGGTCGTCGAGGAGTCTTCGACGGTGGATCCAGAAGTCATCATCGAGGCGGCGGCAACTTTGTCACGGCGGCGGCGGAATCGAAGTGGAAGAATGGATAGAGAGAGAAGGTTCAGATCTATGGTTTCCCATCCCGGGATTTTGGCAAGAGGAATACAGATCCGAAGCTAGCATGAGCACTCTGTTTGAGACCAAAGATGAATATAGCACCGGAGTTTATCAAATCAATAGAAACAGAGCCTACCGAAGCAGAGCCTACGTGGACATAATTCCGATCCGATTCCGCTGGAAAACTCTCAAGTTGTGGTTCTCGAGGGAAAAGGCGAGTGGCGATGAGAAGACGACGATGGAGAGATTTGCATGGTATAAAAGGGTCATAGCTGGAGTGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

168

Amino Acids

20.12

Weight (kDa)

9.94

Isoelectric Point (pI)

85.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AciI	CCGC	6 cut(s)	160, 163, 180, 183, 186, 394
AclWI	GGATC	4 cut(s)	133, 146, 264, 379
AfiI	CCNNNNNNNGG	1 cut(s)	245
AjiI	CACGTC	1 cut(s)	56
AluBI	AGCT	2 cut(s)	278, 491
AluI	AGCT	2 cut(s)	278, 491
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	4 cut(s)	133, 146, 264, 379
Ama87I	CYCGRG	2 cut(s)	244, 421
AoxI	GGCC	1 cut(s)	101
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	2 cut(s)	245, 246
AsuNHI	GCTAGC	1 cut(s)	278
AvaI	CYCGRG	2 cut(s)	244, 421
AvaII	GGWCC	1 cut(s)	50
BamHI	GGATCC	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	119, 455
Bbv12I	GWGCWC	1 cut(s)	290
BccI	CCATC	2 cut(s)	248, 451
BceAI	ACGGC	1 cut(s)	193
BcnI	CCSGG	2 cut(s)	245, 246
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	279
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	4 cut(s)	161, 164, 181, 184
BlsI	GCNGC	4 cut(s)	162, 165, 182, 185
Bme1390I	CCNGG	2 cut(s)	245, 246
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	2 cut(s)	244, 421
BmgBI	CACGTC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	2 cut(s)	245, 246
BmsI	GCATC	1 cut(s)	81
BmtI	GCTAGC	1 cut(s)	282
BpiI	GAAGAC	2 cut(s)	119, 455
BpuEI	CTTGAG	1 cut(s)	392
BpuMI	CCSGG	2 cut(s)	245, 246
BsaAI	YACGTR	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseRI	GAGGAG	2 cut(s)	29, 136
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	290
BsiHKCI	CYCGRG	2 cut(s)	244, 421
BsiSI	CCGG	2 cut(s)	245, 321
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	103
Bso31I	GGTCTC	1 cut(s)	293
BsoBI	CYCGRG	2 cut(s)	244, 421
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	5 cut(s)	27, 138, 226, 269, 384
BspACI	CCGC	6 cut(s)	160, 163, 180, 183, 186, 394
BspANI	GGCC	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	140
BspOI	GCTAGC	1 cut(s)	282
BspPI	GGATC	4 cut(s)	133, 146, 264, 379
BspTNI	GGTCTC	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	5 cut(s)	27, 138, 226, 269, 384
Bst4CI	ACNGT	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	5 cut(s)	30, 141, 229, 272, 387
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	5 cut(s)	27, 138, 226, 269, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 497
BstSCI	CCNGG	2 cut(s)	243, 244
BstUI	CGCG	1 cut(s)	81
BstV2I	GAAGAC	2 cut(s)	119, 455
BstX2I	RGATCY	3 cut(s)	138, 226, 269
BstYI	RGATCY	3 cut(s)	138, 226, 269
BsuRI	GGCC	1 cut(s)	103
BtgZI	GCGATG	1 cut(s)	456
BtrI	CACGTC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	50
Cfr9I	CCCGGG	1 cut(s)	244
CviAII	CATG	2 cut(s)	283, 471
CviJI	RGCY	5 cut(s)	103, 278, 350, 365, 491
CviKI_1	RGCY	5 cut(s)	103, 278, 350, 365, 491
DpnI	GATC	5 cut(s)	29, 140, 228, 271, 386
DpnII	GATC	5 cut(s)	27, 138, 226, 269, 384
EciI	GGCGGA	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	50
Eco88I	CYCGRG	2 cut(s)	244, 421
FaeI	CATG	2 cut(s)	286, 474
FaiI	YATR	7 cut(s)	232, 284, 315, 377, 472, 477, 488
FatI	CATG	2 cut(s)	282, 470
Fnu4HI	GCNGC	4 cut(s)	161, 164, 181, 184
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	161, 164, 181, 184
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	4 cut(s)	161, 164, 181, 184
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	2 cut(s)	245, 321
Hin1II	CATG	2 cut(s)	286, 474
HinfI	GANTC	5 cut(s)	8, 64, 124, 189, 390
HpaII	CCGG	2 cut(s)	245, 321
Hpy166II	GTNNAC	2 cut(s)	50, 373
Hpy188I	TCNGA	6 cut(s)	13, 63, 226, 274, 384, 389
Hpy188III	TCNNGA	3 cut(s)	31, 142, 421
Hpy8I	GTNNAC	2 cut(s)	50, 373
Hpy99I	CGWCG	3 cut(s)	121, 135, 457
HpyAV	CCTTC	3 cut(s)	13, 86, 212
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	2 cut(s)	55, 369
HpyCH4V	TGCA	2 cut(s)	94, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 497
HpySE526I	ACGT	2 cut(s)	55, 369
Hsp92II	CATG	2 cut(s)	286, 474
Kzo9I	GATC	5 cut(s)	27, 138, 226, 269, 384
LpnPI	CCDG	5 cut(s)	155, 258, 334, 382, 477
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	55, 369
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	5 cut(s)	29, 140, 228, 271, 386
MboI	GATC	5 cut(s)	27, 138, 226, 269, 384
MboII	GAAGA	4 cut(s)	37, 119, 212, 460
MflI	RGATCY	3 cut(s)	138, 226, 269
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	8 cut(s)	7, 38, 93, 105, 114, 150, 253, 417
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	2 cut(s)	245, 321
MspR9I	CCNGG	2 cut(s)	245, 246
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	100, 497
NciI	CCSGG	2 cut(s)	245, 246
NdeII	GATC	5 cut(s)	27, 138, 226, 269, 384
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	286, 474
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	173
PaeR7I	CTCGAG	1 cut(s)	421
PfeI	GAWTC	4 cut(s)	8, 64, 189, 390
PflFI	GACNNNGTC	1 cut(s)	54
PkrI	GCNGC	4 cut(s)	162, 165, 182, 185
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	50
PsuI	RGATCY	3 cut(s)	138, 226, 269
PsyI	GACNNNGTC	1 cut(s)	54
SatI	GCNGC	4 cut(s)	161, 164, 181, 184
Sau3AI	GATC	5 cut(s)	27, 138, 226, 269, 384
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	2 cut(s)	245, 246
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	8 cut(s)	49, 58, 78, 116, 223, 280, 372, 493
SfaNI	GCATC	1 cut(s)	81
Sfr274I	CTCGAG	1 cut(s)	421
SinI	GGWCC	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	421
SmaI	CCCGGG	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	407, 421
SmoI	CTYRAG	2 cut(s)	407, 421
Sse9I	AATT	1 cut(s)	378
SsiI	CCGC	6 cut(s)	160, 163, 180, 183, 186, 394
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	243, 244
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	2 cut(s)	58, 372
TaqI	TCGA	7 cut(s)	30, 98, 119, 130, 155, 192, 422
TasI	AATT	1 cut(s)	378
TauI	GCSGC	4 cut(s)	163, 166, 183, 186
TfiI	GAWTC	4 cut(s)	8, 64, 189, 390
TseFI	GTSAC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	324
TspGWI	ACGGA	1 cut(s)	124
TspMI	CCCGGG	1 cut(s)	244
Tth111I	GACNNNGTC	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	421
XmaI	CCCGGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.