ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UBA_RAD5A | PF24559 | 5 - 48 | 5.6e-25 | DNA repair protein RAD5A UBA domain |
| HIRAN | PF08797 | 103 - 206 | 4.7e-14 | HIRAN domain |
| SNF2-rel_dom | PF00176 | 336 - 722 | 3.8e-75 | SNF2-related domain |
| DEAD | PF00270 | 406 - 596 | 5.2e-07 | DEAD/DEAH box helicase |
| zf-C3HC4_3 | PF13920 | 776 - 823 | 4.3e-09 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_2 | PF13639 | 778 - 819 | 3.7e-08 | Ring finger domain |
| zf-C3HC4_2 | PF13923 | 778 - 818 | 1.5e-08 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_UBOX | PF13445 | 779 - 816 | 3e-09 | RING-type zinc-finger |
| zf-C3HC4 | PF00097 | 779 - 818 | 5.1e-09 | Zinc finger, C3HC4 type (RING finger) |
| Prok-RING_4 | PF14447 | 779 - 826 | 4.7e-06 | Prokaryotic RING finger family 4 |
| Helicase_C | PF00271 | 850 - 961 | 1.6e-20 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 111 |
| AccB1I | GGYRCC | 2 cut(s) | 1760, 2981 |
| AccI | GTMKAC | 1 cut(s) | 1534 |
| AccII | CGCG | 5 cut(s) | 119, 176, 209, 799, 2709 |
| AccIII | TCCGGA | 1 cut(s) | 479 |
| AclWI | GGATC | 8 cut(s) | 359, 965, 978, 1027, 1282, 1507, 2819, 2832 |
| AcoI | YGGCCR | 5 cut(s) | 96, 282, 431, 1188, 1459 |
| AcuI | CTGAAG | 3 cut(s) | 222, 2593, 2789 |
| AcyI | GRCGYC | 2 cut(s) | 108, 2982 |
| AdeI | CACNNNGTG | 1 cut(s) | 2381 |
| AfaI | GTAC | 1 cut(s) | 782 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 94, 227, 407, 1015, 1090, 1468 |
| AflII | CTTAAG | 2 cut(s) | 647, 668 |
| AflIII | ACRYGT | 2 cut(s) | 335, 1332 |
| AjiI | CACGTC | 3 cut(s) | 271, 336, 1335 |
| AjnI | CCWGG | 4 cut(s) | 247, 769, 1495, 2679 |
| AleI | CACNNNNGTG | 1 cut(s) | 988 |
| AluBI | AGCT | 7 cut(s) | 951, 1208, 1897, 2024, 2215, 2843, 2957 |
| AluI | AGCT | 7 cut(s) | 951, 1208, 1897, 2024, 2215, 2843, 2957 |
| Alw21I | GWGCWC | 1 cut(s) | 2386 |
| Alw26I | GTCTC | 3 cut(s) | 408, 1146, 2411 |
| AlwI | GGATC | 8 cut(s) | 359, 965, 978, 1027, 1282, 1507, 2819, 2832 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2024 |
| Ama87I | CYCGRG | 1 cut(s) | 193 |
| Aor13HI | TCCGGA | 1 cut(s) | 479 |
| ApeKI | GCWGC | 9 cut(s) | 288, 674, 980, 1718, 1721, 1724, 2238, 2704, 2801 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2310, 2577 |
| AspLEI | GCGC | 7 cut(s) | 795, 801, 1178, 1681, 2679, 2709, 2984 |
| AspS9I | GGNCC | 3 cut(s) | 1120, 1302, 2632 |
| AsuC2I | CCSGG | 1 cut(s) | 408 |
| AsuII | TTCGAA | 1 cut(s) | 215 |
| AvaI | CYCGRG | 1 cut(s) | 193 |
| AvaII | GGWCC | 3 cut(s) | 1120, 1302, 2632 |
| BalI | TGGCCA | 3 cut(s) | 98, 1190, 1461 |
| BamHI | GGATCC | 2 cut(s) | 970, 2824 |
| BanI | GGYRCC | 2 cut(s) | 1760, 2981 |
| BanII | GRGCYC | 3 cut(s) | 88, 514, 831 |
| BbsI | GAAGAC | 4 cut(s) | 1235, 2570, 2599, 2742 |
| Bbv12I | GWGCWC | 1 cut(s) | 2386 |
| BbvCI | CCTCAGC | 1 cut(s) | 918 |
| BbvI | GCAGC | 9 cut(s) | 300, 686, 967, 1705, 1708, 1711, 2250, 2716, 2813 |
| BccI | CCATC | 2 cut(s) | 1740, 2678 |
| BceAI | ACGGC | 2 cut(s) | 385, 446 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 312, 346 |
| BciT130I | CCWGG | 4 cut(s) | 249, 771, 1497, 2681 |
| BclI | TGATCA | 4 cut(s) | 1575, 2074, 2155, 2901 |
| BcnI | CCSGG | 1 cut(s) | 408 |
| BcoDI | GTCTC | 3 cut(s) | 408, 1146, 2411 |
| BfaI | CTAG | 4 cut(s) | 734, 873, 1040, 1205 |
| BfmI | CTRYAG | 3 cut(s) | 1611, 2639, 2844 |
| BfoI | RGCGCY | 2 cut(s) | 796, 2985 |
| BfrI | CTTAAG | 2 cut(s) | 647, 668 |
| BglII | AGATCT | 2 cut(s) | 2203, 2476 |
| Bme1390I | CCNGG | 5 cut(s) | 249, 408, 771, 1497, 2681 |
| Bme18I | GGWCC | 3 cut(s) | 1120, 1302, 2632 |
| BmeT110I | CYCGRG | 1 cut(s) | 193 |
| BmgBI | CACGTC | 3 cut(s) | 271, 336, 1335 |
| BmgT120I | GGNCC | 3 cut(s) | 1120, 1302, 2632 |
| BmiI | GGNNCC | 6 cut(s) | 972, 1121, 1762, 2507, 2826, 2983 |
| BmrFI | CCNGG | 5 cut(s) | 249, 408, 771, 1497, 2681 |
| BmrI | ACTGGG | 1 cut(s) | 2539 |
| BmsI | GCATC | 9 cut(s) | 904, 1201, 1534, 1607, 2123, 2353, 2813, 2886, 3021 |
| BmuI | ACTGGG | 1 cut(s) | 2539 |
| BpiI | GAAGAC | 4 cut(s) | 1235, 2570, 2599, 2742 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2391, 2423 |
| BpmI | CTGGAG | 2 cut(s) | 1170, 1802 |
| Bpu10I | CCTNAGC | 1 cut(s) | 918 |
| Bpu14I | TTCGAA | 1 cut(s) | 215 |
| BpuEI | CTTGAG | 1 cut(s) | 607 |
| BpuMI | CCSGG | 1 cut(s) | 408 |
| BsaBI | GATNNNNATC | 2 cut(s) | 125, 1504 |
| BsaHI | GRCGYC | 2 cut(s) | 108, 2982 |
| BsaJI | CCNNGG | 2 cut(s) | 1823, 2828 |
| BsaWI | WCCGGW | 3 cut(s) | 479, 1307, 1803 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 94, 227, 407, 1015, 1090, 1468 |
| Bse118I | RCCGGY | 3 cut(s) | 284, 433, 1299 |
| Bse1I | ACTGG | 9 cut(s) | 243, 678, 727, 1326, 1462, 1762, 2447, 2534, 2614 |
| Bse3DI | GCAATG | 1 cut(s) | 1077 |
| Bse8I | GATNNNNATC | 2 cut(s) | 125, 1504 |
| BseAI | TCCGGA | 1 cut(s) | 479 |
| BseBI | CCWGG | 4 cut(s) | 249, 771, 1497, 2681 |
| BseDI | CCNNGG | 2 cut(s) | 1823, 2828 |
| BseJI | GATNNNNATC | 2 cut(s) | 125, 1504 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 94, 227, 407, 1015, 1090, 1468 |
| BseMI | GCAATG | 1 cut(s) | 1077 |
| BseMII | CTCAG | 3 cut(s) | 909, 945, 1659 |
| BseNI | ACTGG | 9 cut(s) | 243, 678, 727, 1326, 1462, 1762, 2447, 2534, 2614 |
| BseRI | GAGGAG | 4 cut(s) | 361, 1209, 1886, 2793 |
| BseX3I | CGGCCG | 2 cut(s) | 282, 431 |
| BseXI | GCAGC | 9 cut(s) | 300, 686, 967, 1705, 1708, 1711, 2250, 2716, 2813 |
| BsgI | GTGCAG | 1 cut(s) | 966 |
| Bsh1236I | CGCG | 5 cut(s) | 119, 176, 209, 799, 2709 |
| Bsh1285I | CGRYCG | 3 cut(s) | 285, 434, 474 |
| BshNI | GGYRCC | 2 cut(s) | 1760, 2981 |
| BsiEI | CGRYCG | 3 cut(s) | 285, 434, 474 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2386 |
| BsiHKCI | CYCGRG | 1 cut(s) | 193 |
| BsiSI | CCGG | 9 cut(s) | 57, 285, 408, 434, 480, 1300, 1308, 1804, 2775 |
| BslFI | GGGAC | 6 cut(s) | 168, 441, 1133, 1650, 2322, 2701 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 94, 227, 407, 1015, 1090, 1468 |
| BsmAI | GTCTC | 3 cut(s) | 408, 1146, 2411 |
| BsmBI | CGTCTC | 2 cut(s) | 408, 1146 |
| BsmFI | GGGAC | 6 cut(s) | 168, 441, 1133, 1650, 2322, 2701 |
| BsmI | GAATGC | 1 cut(s) | 1144 |
| BsoBI | CYCGRG | 1 cut(s) | 193 |
| Bsp119I | TTCGAA | 1 cut(s) | 215 |
| Bsp1286I | GDGCHC | 4 cut(s) | 88, 514, 831, 2386 |
| Bsp13I | TCCGGA | 1 cut(s) | 479 |
| Bsp1407I | TGTACA | 1 cut(s) | 780 |
| Bsp19I | CCATGG | 1 cut(s) | 2828 |
| Bsp68I | TCGCGA | 2 cut(s) | 176, 209 |
| BspCNI | CTCAG | 3 cut(s) | 910, 946, 1658 |
| BspEI | TCCGGA | 1 cut(s) | 479 |
| BspFNI | CGCG | 5 cut(s) | 119, 176, 209, 799, 2709 |
| BspLI | GGNNCC | 6 cut(s) | 972, 1121, 1762, 2507, 2826, 2983 |
| BspMAI | CTGCAG | 1 cut(s) | 2643 |
| BspPI | GGATC | 8 cut(s) | 359, 965, 978, 1027, 1282, 1507, 2819, 2832 |
| BspQI | GCTCTTC | 1 cut(s) | 1026 |
| BspT104I | TTCGAA | 1 cut(s) | 215 |
| BspT107I | GGYRCC | 2 cut(s) | 1760, 2981 |
| BspTI | CTTAAG | 2 cut(s) | 647, 668 |
| BsrDI | GCAATG | 1 cut(s) | 1077 |
| BsrFI | RCCGGY | 3 cut(s) | 284, 433, 1299 |
| BsrGI | TGTACA | 1 cut(s) | 780 |
| BsrI | ACTGG | 9 cut(s) | 243, 678, 727, 1326, 1462, 1762, 2447, 2534, 2614 |
| BssAI | RCCGGY | 3 cut(s) | 284, 433, 1299 |
| BssECI | CCNNGG | 2 cut(s) | 1823, 2828 |
| BssNI | GRCGYC | 2 cut(s) | 108, 2982 |
| BssT1I | CCWWGG | 2 cut(s) | 1823, 2828 |
| Bst2UI | CCWGG | 4 cut(s) | 249, 771, 1497, 2681 |
| Bst6I | CTCTTC | 3 cut(s) | 1026, 1083, 2453 |
| BstACI | GRCGYC | 2 cut(s) | 108, 2982 |
| BstAFI | CTTAAG | 2 cut(s) | 647, 668 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2810 |
| BstAUI | TGTACA | 1 cut(s) | 780 |
| BstBI | TTCGAA | 1 cut(s) | 215 |
| BstDEI | CTNAG | 6 cut(s) | 740, 918, 954, 1623, 1645, 2465 |
| BstDSI | CCRYGG | 1 cut(s) | 2828 |
| BstFNI | CGCG | 5 cut(s) | 119, 176, 209, 799, 2709 |
| BstH2I | RGCGCY | 2 cut(s) | 796, 2985 |
| BstHHI | GCGC | 7 cut(s) | 795, 801, 1178, 1681, 2679, 2709, 2984 |
| BstMAI | GTCTC | 3 cut(s) | 408, 1146, 2411 |
| BstMCI | CGRYCG | 3 cut(s) | 285, 434, 474 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 664, 1724, 1733, 1835, 2598, 2810, 2954 |
| BstNI | CCWGG | 4 cut(s) | 249, 771, 1497, 2681 |
| BstNSI | RCATGY | 1 cut(s) | 851 |
| BstSCI | CCNGG | 5 cut(s) | 247, 406, 769, 1495, 2679 |
| BstSFI | CTRYAG | 3 cut(s) | 1611, 2639, 2844 |
| BstUI | CGCG | 5 cut(s) | 119, 176, 209, 799, 2709 |
| BstV1I | GCAGC | 9 cut(s) | 300, 686, 967, 1705, 1708, 1711, 2250, 2716, 2813 |
| BstV2I | GAAGAC | 4 cut(s) | 1235, 2570, 2599, 2742 |
| BstX2I | RGATCY | 5 cut(s) | 970, 1499, 2203, 2476, 2824 |
| BstYI | RGATCY | 5 cut(s) | 970, 1499, 2203, 2476, 2824 |
| BstZI | CGGCCG | 2 cut(s) | 282, 431 |
| BtgI | CCRYGG | 1 cut(s) | 2828 |
| BtgZI | GCGATG | 4 cut(s) | 267, 1581, 2372, 2858 |
| BtrI | CACGTC | 3 cut(s) | 271, 336, 1335 |
| BtsI | GCAGTG | 1 cut(s) | 2955 |
| BtsIMutI | CAGTG | 7 cut(s) | 705, 1469, 1947, 2621, 2746, 2765, 2955 |
| BtuMI | TCGCGA | 2 cut(s) | 176, 209 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2024 |
| CfoI | GCGC | 7 cut(s) | 795, 801, 1178, 1681, 2679, 2709, 2984 |
| Cfr10I | RCCGGY | 3 cut(s) | 284, 433, 1299 |
| Cfr13I | GGNCC | 3 cut(s) | 1120, 1302, 2632 |
| CseI | GACGC | 1 cut(s) | 1163 |
| Csp6I | GTAC | 1 cut(s) | 781 |
| CviAII | CATG | 8 cut(s) | 70, 94, 848, 1057, 1271, 1487, 2510, 2829 |
| CviQI | GTAC | 1 cut(s) | 781 |
| DdeI | CTNAG | 6 cut(s) | 740, 918, 954, 1623, 1645, 2465 |
| DinI | GGCGCC | 1 cut(s) | 2983 |
| DraI | TTTAAA | 1 cut(s) | 2053 |
| DraIII | CACNNNGTG | 1 cut(s) | 2381 |
| EaeI | YGGCCR | 5 cut(s) | 96, 282, 431, 1188, 1459 |
| EagI | CGGCCG | 2 cut(s) | 282, 431 |
| Eam1104I | CTCTTC | 3 cut(s) | 1026, 1083, 2453 |
| EarI | CTCTTC | 3 cut(s) | 1026, 1083, 2453 |
| EciI | GGCGGA | 1 cut(s) | 2437 |
| EclXI | CGGCCG | 2 cut(s) | 282, 431 |
| Eco130I | CCWWGG | 2 cut(s) | 1823, 2828 |
| Eco147I | AGGCCT | 3 cut(s) | 738, 1966, 2045 |
| Eco24I | GRGCYC | 3 cut(s) | 88, 514, 831 |
| Eco47I | GGWCC | 3 cut(s) | 1120, 1302, 2632 |
| Eco52I | CGGCCG | 2 cut(s) | 282, 431 |
| Eco57I | CTGAAG | 3 cut(s) | 222, 2593, 2789 |
| Eco88I | CYCGRG | 1 cut(s) | 193 |
| EcoRI | GAATTC | 4 cut(s) | 211, 1618, 2245, 2425 |
| EcoRII | CCWGG | 4 cut(s) | 247, 769, 1495, 2679 |
| EcoT14I | CCWWGG | 2 cut(s) | 1823, 2828 |
| EcoT22I | ATGCAT | 3 cut(s) | 1058, 1144, 2116 |
| EcoT38I | GRGCYC | 3 cut(s) | 88, 514, 831 |
| EgeI | GGCGCC | 1 cut(s) | 2983 |
| EheI | GGCGCC | 1 cut(s) | 2983 |
| ErhI | CCWWGG | 2 cut(s) | 1823, 2828 |
| Esp3I | CGTCTC | 2 cut(s) | 408, 1146 |
| FaeI | CATG | 8 cut(s) | 73, 97, 851, 1060, 1274, 1490, 2513, 2832 |
| FaqI | GGGAC | 6 cut(s) | 168, 441, 1133, 1650, 2322, 2701 |
| FatI | CATG | 8 cut(s) | 69, 93, 847, 1056, 1270, 1486, 2509, 2828 |
| FauI | CCCGC | 2 cut(s) | 247, 804 |
| FauNDI | CATATG | 3 cut(s) | 1420, 1585, 2342 |
| FbaI | TGATCA | 4 cut(s) | 1575, 2074, 2155, 2901 |
| FblI | GTMKAC | 1 cut(s) | 1534 |
| FriOI | GRGCYC | 3 cut(s) | 88, 514, 831 |
| FspBI | CTAG | 4 cut(s) | 734, 873, 1040, 1205 |
| GlaI | GCGC | 7 cut(s) | 794, 800, 1177, 1680, 2678, 2708, 2983 |
| GsuI | CTGGAG | 2 cut(s) | 1170, 1802 |
| HaeII | RGCGCY | 2 cut(s) | 796, 2985 |
| HapII | CCGG | 9 cut(s) | 57, 285, 408, 434, 480, 1300, 1308, 1804, 2775 |
| HgaI | GACGC | 1 cut(s) | 1163 |
| HhaI | GCGC | 7 cut(s) | 795, 801, 1178, 1681, 2679, 2709, 2984 |
| Hin1I | GRCGYC | 2 cut(s) | 108, 2982 |
| Hin1II | CATG | 8 cut(s) | 73, 97, 851, 1060, 1274, 1490, 2513, 2832 |
| Hin6I | GCGC | 7 cut(s) | 793, 799, 1176, 1679, 2677, 2707, 2982 |
| HinP1I | GCGC | 7 cut(s) | 793, 799, 1176, 1679, 2677, 2707, 2982 |
| HincII | GTYRAC | 1 cut(s) | 1289 |
| HindII | GTYRAC | 1 cut(s) | 1289 |
| HindIII | AAGCTT | 1 cut(s) | 2213 |
| HpaII | CCGG | 9 cut(s) | 57, 285, 408, 434, 480, 1300, 1308, 1804, 2775 |
| Hpy166II | GTNNAC | 9 cut(s) | 783, 995, 1289, 1535, 2005, 2012, 2567, 2619, 2963 |
| Hpy8I | GTNNAC | 9 cut(s) | 783, 995, 1289, 1535, 2005, 2012, 2567, 2619, 2963 |
| Hpy99I | CGWCG | 4 cut(s) | 23, 53, 110, 337 |
| HpyCH4IV | ACGT | 5 cut(s) | 108, 270, 335, 1334, 2224 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 664, 1724, 1733, 1835, 2598, 2810, 2954 |
| HpyF3I | CTNAG | 6 cut(s) | 740, 918, 954, 1623, 1645, 2465 |
| HpySE526I | ACGT | 5 cut(s) | 108, 270, 335, 1334, 2224 |
| Hsp92I | GRCGYC | 2 cut(s) | 108, 2982 |
| Hsp92II | CATG | 8 cut(s) | 73, 97, 851, 1060, 1274, 1490, 2513, 2832 |
| HspAI | GCGC | 7 cut(s) | 793, 799, 1176, 1679, 2677, 2707, 2982 |
| KasI | GGCGCC | 1 cut(s) | 2981 |
| Kpn2I | TCCGGA | 1 cut(s) | 479 |
| KroI | GCCGGC | 2 cut(s) | 284, 433 |
| KroNI | GCCGGC | 2 cut(s) | 286, 435 |
| Ksp22I | TGATCA | 4 cut(s) | 1575, 2074, 2155, 2901 |
| LguI | GCTCTTC | 1 cut(s) | 1026 |
| LmnI | GCTCC | 2 cut(s) | 580, 1067 |
| Lsp1109I | GCAGC | 9 cut(s) | 300, 686, 967, 1705, 1708, 1711, 2250, 2716, 2813 |
| LweI | GCATC | 9 cut(s) | 904, 1201, 1534, 1607, 2123, 2353, 2813, 2886, 3021 |
| MaeI | CTAG | 4 cut(s) | 734, 873, 1040, 1205 |
| MaeII | ACGT | 5 cut(s) | 108, 270, 335, 1334, 2224 |
| MaeIII | GTNAC | 8 cut(s) | 109, 266, 773, 1328, 1366, 2660, 2741, 2763 |
| MflI | RGATCY | 5 cut(s) | 970, 1499, 2203, 2476, 2824 |
| MhlI | GDGCHC | 4 cut(s) | 88, 514, 831, 2386 |
| MlsI | TGGCCA | 3 cut(s) | 98, 1190, 1461 |
| MluNI | TGGCCA | 3 cut(s) | 98, 1190, 1461 |
| Mly113I | GGCGCC | 1 cut(s) | 2982 |
| MlyI | GAGTC | 6 cut(s) | 205, 1069, 1543, 2185, 2470, 2683 |
| MmeI | TCCRAC | 4 cut(s) | 90, 922, 1060, 2764 |
| Mox20I | TGGCCA | 3 cut(s) | 98, 1190, 1461 |
| Mph1103I | ATGCAT | 3 cut(s) | 1058, 1144, 2116 |
| MroI | TCCGGA | 1 cut(s) | 479 |
| MroNI | GCCGGC | 2 cut(s) | 284, 433 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2310, 2577 |
| MscI | TGGCCA | 3 cut(s) | 98, 1190, 1461 |
| MslI | CAYNNNNRTG | 3 cut(s) | 988, 2109, 2750 |
| Msp20I | TGGCCA | 3 cut(s) | 98, 1190, 1461 |
| MspA1I | CMGCKG | 2 cut(s) | 2843, 2968 |
| MspCI | CTTAAG | 2 cut(s) | 647, 668 |
| MspI | CCGG | 9 cut(s) | 57, 285, 408, 434, 480, 1300, 1308, 1804, 2775 |
| MspR9I | CCNGG | 5 cut(s) | 249, 408, 771, 1497, 2681 |
| Mva1269I | GAATGC | 1 cut(s) | 1144 |
| MvaI | CCWGG | 4 cut(s) | 249, 771, 1497, 2681 |
| MvnI | CGCG | 5 cut(s) | 119, 176, 209, 799, 2709 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 664, 1724, 1733, 1835, 2598, 2810, 2954 |
| NaeI | GCCGGC | 2 cut(s) | 286, 435 |
| NarI | GGCGCC | 1 cut(s) | 2982 |
| NciI | CCSGG | 1 cut(s) | 408 |
| NcoI | CCATGG | 1 cut(s) | 2828 |
| NdeI | CATATG | 3 cut(s) | 1420, 1585, 2342 |
| NgoMIV | GCCGGC | 2 cut(s) | 284, 433 |
| NlaIII | CATG | 8 cut(s) | 73, 97, 851, 1060, 1274, 1490, 2513, 2832 |
| NlaIV | GGNNCC | 6 cut(s) | 972, 1121, 1762, 2507, 2826, 2983 |
| NmeAIII | GCCGAG | 1 cut(s) | 2423 |
| NmuCI | GTSAC | 6 cut(s) | 109, 266, 773, 1366, 2741, 2763 |
| NruI | TCGCGA | 2 cut(s) | 176, 209 |
| NsiI | ATGCAT | 3 cut(s) | 1058, 1144, 2116 |
| NspI | RCATGY | 1 cut(s) | 851 |
| NspV | TTCGAA | 1 cut(s) | 215 |
| OliI | CACNNNNGTG | 1 cut(s) | 988 |
| PaeR7I | CTCGAG | 1 cut(s) | 193 |
| PceI | AGGCCT | 3 cut(s) | 738, 1966, 2045 |
| PciSI | GCTCTTC | 1 cut(s) | 1026 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2395 |
| PctI | GAATGC | 1 cut(s) | 1144 |
| PdiI | GCCGGC | 2 cut(s) | 286, 435 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2310, 2577 |
| PfeI | GAWTC | 8 cut(s) | 53, 476, 1200, 1481, 2537, 2695, 2836, 2869 |
| PfoI | TCCNGGA | 1 cut(s) | 406 |
| PleI | GAGTC | 6 cut(s) | 204, 1069, 1543, 2184, 2469, 2683 |
| PluTI | GGCGCC | 1 cut(s) | 2985 |
| PpsI | GAGTC | 6 cut(s) | 204, 1069, 1543, 2184, 2469, 2683 |
| Psp6I | CCWGG | 4 cut(s) | 247, 769, 1495, 2679 |
| PspGI | CCWGG | 4 cut(s) | 247, 769, 1495, 2679 |
| PspN4I | GGNNCC | 6 cut(s) | 972, 1121, 1762, 2507, 2826, 2983 |
| PspPI | GGNCC | 3 cut(s) | 1120, 1302, 2632 |
| PstI | CTGCAG | 1 cut(s) | 2643 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2024 |
| PsuI | RGATCY | 5 cut(s) | 970, 1499, 2203, 2476, 2824 |
| PvuII | CAGCTG | 1 cut(s) | 2843 |
| RruI | TCGCGA | 2 cut(s) | 176, 209 |
| RsaI | GTAC | 1 cut(s) | 782 |
| RsaNI | GTAC | 1 cut(s) | 781 |
| RseI | CAYNNNNRTG | 3 cut(s) | 988, 2109, 2750 |
| SapI | GCTCTTC | 1 cut(s) | 1026 |
| Sau96I | GGNCC | 3 cut(s) | 1120, 1302, 2632 |
| SchI | GAGTC | 6 cut(s) | 205, 1069, 1543, 2185, 2470, 2683 |
| ScrFI | CCNGG | 5 cut(s) | 249, 408, 771, 1497, 2681 |
| SduI | GDGCHC | 4 cut(s) | 88, 514, 831, 2386 |
| SfaNI | GCATC | 9 cut(s) | 904, 1201, 1534, 1607, 2123, 2353, 2813, 2886, 3021 |
| SfcI | CTRYAG | 3 cut(s) | 1611, 2639, 2844 |
| SfoI | GGCGCC | 1 cut(s) | 2983 |
| Sfr274I | CTCGAG | 1 cut(s) | 193 |
| SfuI | TTCGAA | 1 cut(s) | 215 |
| SinI | GGWCC | 3 cut(s) | 1120, 1302, 2632 |
| SlaI | CTCGAG | 1 cut(s) | 193 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 988, 2109, 2750 |
| SmlI | CTYRAG | 4 cut(s) | 193, 586, 647, 668 |
| SmoI | CTYRAG | 4 cut(s) | 193, 586, 647, 668 |
| SseBI | AGGCCT | 3 cut(s) | 738, 1966, 2045 |
| SspDI | GGCGCC | 1 cut(s) | 2981 |
| SspI | AATATT | 1 cut(s) | 2198 |
| SspMI | CTAG | 4 cut(s) | 734, 873, 1040, 1205 |
| StuI | AGGCCT | 3 cut(s) | 738, 1966, 2045 |
| StyD4I | CCNGG | 5 cut(s) | 247, 406, 769, 1495, 2679 |
| StyI | CCWWGG | 2 cut(s) | 1823, 2828 |
| TaiI | ACGT | 5 cut(s) | 111, 273, 338, 1337, 2227 |
| TaqI | TCGA | 8 cut(s) | 51, 135, 194, 215, 332, 555, 2179, 2931 |
| TaqII | GACCGA | 1 cut(s) | 488 |
| TatI | WGTACW | 1 cut(s) | 780 |
| TauI | GCSGC | 5 cut(s) | 119, 315, 362, 440, 443 |
| TfiI | GAWTC | 8 cut(s) | 53, 476, 1200, 1481, 2537, 2695, 2836, 2869 |
| TscAI | CASTG | 7 cut(s) | 705, 1469, 1954, 2621, 2746, 2772, 2955 |
| TseFI | GTSAC | 6 cut(s) | 109, 266, 773, 1366, 2741, 2763 |
| TseI | GCWGC | 9 cut(s) | 288, 674, 980, 1718, 1721, 1724, 2238, 2704, 2801 |
| Tsp45I | GTSAC | 6 cut(s) | 109, 266, 773, 1366, 2741, 2763 |
| TspGWI | ACGGA | 1 cut(s) | 240 |
| TspRI | CASTG | 7 cut(s) | 705, 1469, 1954, 2621, 2746, 2772, 2955 |
| Vha464I | CTTAAG | 2 cut(s) | 647, 668 |
| VpaK11BI | GGWCC | 3 cut(s) | 1120, 1302, 2632 |
| XbaI | TCTAGA | 1 cut(s) | 872 |
| XceI | RCATGY | 1 cut(s) | 851 |
| XhoI | CTCGAG | 1 cut(s) | 193 |
| XmiI | GTMKAC | 1 cut(s) | 1534 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2310, 2577 |
| XspI | CTAG | 4 cut(s) | 734, 873, 1040, 1205 |
| ZraI | GACGTC | 1 cut(s) | 109 |
| Zsp2I | ATGCAT | 3 cut(s) | 1058, 1144, 2116 |