Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Reverse (-)

2804250 .. 2806728

Gene Structure 2479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAGCACTCTGTTTGAGACCAAAGAAGAATTTAGCACCCGAATTTATCAAACCGATATAATCAGTGGCTACAAAAGCAGAGCCTCCGTGGACATAATTCCGATCAGATTCGACCTGCACAAGTCATATGCAGACTATAATCCAGAAATCCGCGAGTATGTGGTGGAAGCAGGAATACCAATTTTGGTACGCAGGAAAACTCTCAAGCTGCGGTTCTCGAGGGAGTGGGCGAGTGGCGATGAGAAGACAACGATGAAGAGATTTGCAAGGTACAAAAGGGTCATAGCTCGGTCTCCCAGGGAAGCCAACAAGTTACGGGACAAGTTGGGCAGATATCTCTACACATCTATGGGTCTTGACGAAGATAAGCATCTTCCTATTGTTGAACAAATTATGGAAATGCTTCCATCAGCCGTGCCGGATAAAGGTATCAAGGTCCAAATCATCCATGGTATATATAGAGATACGGAGGAGACGTTGCACTTGCACCAGGAGGATTTATACTGCAGGGCAAAGCTGATTCCGGCAGCTGAATCATTCATCCAGGCTTTGGAGGAAGTGAGGAGTCCGCCGCTTGAATTGGAGTGTCCTATCTATCAATCATCTCTGTCCCACTTGCCGCCACCCGAGTTGACTGCCACTATGCTGTGCTGCAGAGGTGGAGGACCCTTGACAGAAACTGTTGAGAATCCACTCGAGCGTTTGAGCTGTCCATTGAAAAGGGGGCTTGGCTCCTTGAACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

249

Amino Acids

28.44

Weight (kDa)

7.65

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	123
AccB7I	CCANNNNNTGG	1 cut(s)	550
AccII	CGCG	1 cut(s)	153
AciI	CCGC	5 cut(s)	151, 211, 569, 572, 620
AcsI	RAATTY	2 cut(s)	29, 42
AfaI	GTAC	2 cut(s)	189, 272
AfiI	CCNNNNNNNGG	2 cut(s)	425, 550
AgsI	TTSAA	4 cut(s)	386, 578, 718, 739
AjnI	CCWGG	3 cut(s)	296, 489, 543
AluBI	AGCT	5 cut(s)	208, 287, 517, 530, 708
AluI	AGCT	5 cut(s)	208, 287, 517, 530, 708
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	11, 297, 467
AlwNI	CAGNNNCTG	1 cut(s)	680
Ama87I	CYCGRG	3 cut(s)	217, 626, 695
ApeKI	GCWGC	3 cut(s)	208, 527, 651
ApoI	RAATTY	2 cut(s)	29, 42
Asp700I	GAANNNNTTC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	436, 665
AvaI	CYCGRG	3 cut(s)	217, 626, 695
AvaII	GGWCC	2 cut(s)	436, 665
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	195, 539, 638
BccI	CCATC	1 cut(s)	415
BceAI	ACGGC	1 cut(s)	398
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	3 cut(s)	298, 491, 545
BcoDI	GTCTC	3 cut(s)	11, 297, 467
BfmI	CTRYAG	2 cut(s)	505, 652
BfuAI	ACCTGC	1 cut(s)	123
BisI	GCNGC	5 cut(s)	209, 528, 572, 620, 652
BlsI	GCNGC	5 cut(s)	210, 529, 573, 621, 653
Bme1390I	CCNGG	3 cut(s)	298, 491, 545
Bme18I	GGWCC	2 cut(s)	436, 665
BmeT110I	CYCGRG	3 cut(s)	217, 626, 695
BmgT120I	GGNCC	2 cut(s)	436, 665
BmiI	GGNNCC	2 cut(s)	667, 733
BmrFI	CCNGG	3 cut(s)	298, 491, 545
BmsI	GCATC	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	2 cut(s)	11, 297
BsaJI	CCNNGG	4 cut(s)	87, 296, 297, 448
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 550
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	3 cut(s)	298, 491, 545
BseDI	CCNNGG	4 cut(s)	87, 296, 297, 448
BseGI	GGATG	2 cut(s)	444, 540
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	425, 550
BseRI	GAGGAG	2 cut(s)	485, 577
BseXI	GCAGC	3 cut(s)	195, 539, 638
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	3 cut(s)	217, 626, 695
BsiSI	CCGG	2 cut(s)	419, 524
BslFI	GGGAC	2 cut(s)	332, 595
BslI	CCNNNNNNNGG	2 cut(s)	425, 550
BsmAI	GTCTC	3 cut(s)	11, 297, 467
BsmBI	CGTCTC	1 cut(s)	467
BsmFI	GGGAC	2 cut(s)	332, 595
Bso31I	GGTCTC	2 cut(s)	11, 297
BsoBI	CYCGRG	3 cut(s)	217, 626, 695
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	102
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	5 cut(s)	151, 211, 569, 572, 620
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	667, 733
BspMAI	CTGCAG	2 cut(s)	509, 656
BspMI	ACCTGC	1 cut(s)	123
BspTNI	GGTCTC	2 cut(s)	11, 297
BssECI	CCNNGG	4 cut(s)	87, 296, 297, 448
BssMI	GATC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	448
Bst2UI	CCWGG	3 cut(s)	298, 491, 545
Bst4CI	ACNGT	1 cut(s)	682
Bst6I	CTCTTC	1 cut(s)	251
BstDSI	CCRYGG	2 cut(s)	87, 448
BstF5I	GGATG	2 cut(s)	444, 540
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	3 cut(s)	11, 297, 467
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNI	CCWGG	3 cut(s)	298, 491, 545
BstSCI	CCNGG	3 cut(s)	296, 489, 543
BstSFI	CTRYAG	2 cut(s)	505, 652
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	195, 539, 638
BstV2I	GAAGAC	1 cut(s)	251
BtgI	CCRYGG	2 cut(s)	87, 448
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	444, 540
BtsIMutI	CAGTG	1 cut(s)	70
BveI	ACCTGC	1 cut(s)	123
CaiI	CAGNNNCTG	1 cut(s)	680
Cfr13I	GGNCC	2 cut(s)	436, 665
Csp6I	GTAC	2 cut(s)	188, 271
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviAII	CATG	1 cut(s)	449
CviQI	GTAC	2 cut(s)	188, 271
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EciI	GGCGGA	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	448
Eco31I	GGTCTC	2 cut(s)	11, 297
Eco32I	GATATC	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	436, 665
Eco88I	CYCGRG	3 cut(s)	217, 626, 695
EcoO109I	RGGNCCY	1 cut(s)	665
EcoRII	CCWGG	3 cut(s)	296, 489, 543
EcoRV	GATATC	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	1 cut(s)	452
FaqI	GGGAC	2 cut(s)	332, 595
FatI	CATG	1 cut(s)	448
FauNDI	CATATG	1 cut(s)	127
Fnu4HI	GCNGC	5 cut(s)	209, 528, 572, 620, 652
FokI	GGATG	2 cut(s)	431, 527
Fsp4HI	GCNGC	5 cut(s)	209, 528, 572, 620, 652
GluI	GCNGC	5 cut(s)	209, 528, 572, 620, 652
HapII	CCGG	2 cut(s)	419, 524
Hin1II	CATG	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HinfI	GANTC	5 cut(s)	108, 520, 533, 565, 688
HpaII	CCGG	2 cut(s)	419, 524
Hpy166II	GTNNAC	2 cut(s)	91, 633
Hpy188I	TCNGA	2 cut(s)	102, 107
Hpy188III	TCNNGA	3 cut(s)	143, 217, 356
Hpy8I	GTNNAC	2 cut(s)	91, 633
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	7 cut(s)	118, 131, 266, 481, 487, 507, 654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	476
Hsp92II	CATG	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	737
Lsp1109I	GCAGC	3 cut(s)	195, 539, 638
LweI	GCATC	1 cut(s)	379
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	5 cut(s)	38, 256, 268, 365, 374
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	6 cut(s)	29, 42, 96, 180, 390, 578
MlyI	GAGTC	1 cut(s)	574
MnlI	CCTC	8 cut(s)	94, 213, 463, 487, 547, 555, 650, 656
MroXI	GAANNNNTTC	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	2 cut(s)	419, 524
MspR9I	CCNGG	3 cut(s)	298, 491, 545
MvaI	CCWGG	3 cut(s)	298, 491, 545
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	448
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	1 cut(s)	452
NlaIV	GGNNCC	2 cut(s)	667, 733
PaeR7I	CTCGAG	2 cut(s)	217, 695
PasI	CCCWGGG	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	4 cut(s)	108, 520, 533, 688
PflMI	CCANNNNNTGG	1 cut(s)	550
PkrI	GCNGC	5 cut(s)	210, 529, 573, 621, 653
PleI	GAGTC	1 cut(s)	573
PpsI	GAGTC	1 cut(s)	573
PpuMI	RGGWCCY	1 cut(s)	665
Psp5II	RGGWCCY	1 cut(s)	665
Psp6I	CCWGG	3 cut(s)	296, 489, 543
PspGI	CCWGG	3 cut(s)	296, 489, 543
PspN4I	GGNNCC	2 cut(s)	667, 733
PspPI	GGNCC	2 cut(s)	436, 665
PspPPI	RGGWCCY	1 cut(s)	665
PspXI	VCTCGAGB	1 cut(s)	695
PstI	CTGCAG	2 cut(s)	509, 656
PstNI	CAGNNNCTG	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	2 cut(s)	189, 272
RsaNI	GTAC	2 cut(s)	188, 271
RseI	CAYNNNNRTG	1 cut(s)	347
SatI	GCNGC	5 cut(s)	209, 528, 572, 620, 652
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	2 cut(s)	436, 665
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	3 cut(s)	298, 491, 545
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	379
SfcI	CTRYAG	2 cut(s)	505, 652
Sfr274I	CTCGAG	2 cut(s)	217, 695
SinI	GGWCC	2 cut(s)	436, 665
SlaI	CTCGAG	2 cut(s)	217, 695
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	3 cut(s)	203, 217, 695
SmoI	CTYRAG	3 cut(s)	203, 217, 695
Sse9I	AATT	6 cut(s)	29, 42, 96, 180, 390, 578
SsiI	CCGC	5 cut(s)	151, 211, 569, 572, 620
StyD4I	CCNGG	3 cut(s)	296, 489, 543
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	3 cut(s)	111, 218, 696
TaqII	GACCGA	1 cut(s)	279
TasI	AATT	6 cut(s)	29, 42, 96, 180, 390, 578
TauI	GCSGC	2 cut(s)	574, 622
TfiI	GAWTC	4 cut(s)	108, 520, 533, 688
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	3 cut(s)	208, 527, 651
TspDTI	ATGAA	2 cut(s)	269, 529
TspGWI	ACGGA	2 cut(s)	76, 482
TspRI	CASTG	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	550
VpaK11BI	GGWCC	2 cut(s)	436, 665
XapI	RAATTY	2 cut(s)	29, 42
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XhoI	CTCGAG	2 cut(s)	217, 695
XmnI	GAANNNNTTC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.