Rroxscaffold_7G00182610

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
21704044 .. 21710191
6148 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00182610.1

Sequence Viewer

Length: 177 bp
ATGGAACTGGTGGCAATTGGATTCATCTGCCACAAAAAGCTGGGTTTTAGGTTCTTCAACAAGAATCAAGTTGACCACATTAAGGGTGATCAGAACACGTGGTTTTCTAATAAAGAAGCCAAGCTGCTGAAATTGCAGAAAGTCACCCCTGAATTTGGAAATTTGTTTCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.78

Weight (kDa)

9.58

Isoelectric Point (pI)

24.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 152, 160
AcvI CACGTG 1 cut(s) 99
AfiI CCNNNNNNNGG 2 cut(s) 82, 155
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 2 cut(s) 40, 124
AluI AGCT 2 cut(s) 40, 124
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 2 cut(s) 152, 160
AsuHPI GGTGA 2 cut(s) 98, 136
BbrPI CACGTG 1 cut(s) 99
BbvI GCAGC 1 cut(s) 111
BclI TGATCA 1 cut(s) 88
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 99
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 155
Bse1I ACTGG 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 82, 155
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 111
BseYI CCCAGC 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 82, 155
Bsp143I GATC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 12
BssMI GATC 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 99
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 111
CviAII CATG 1 cut(s) 174
CviJI RGCY 3 cut(s) 40, 119, 124
CviKI_1 RGCY 3 cut(s) 40, 119, 124
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco72I CACGTG 1 cut(s) 99
FaeI CATG 1 cut(s) 177
FaiI YATR 1 cut(s) 175
FatI CATG 1 cut(s) 173
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 125
GsaI CCCAGC 1 cut(s) 44
Hin1II CATG 1 cut(s) 177
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 2 cut(s) 21, 64
HphI GGTGA 2 cut(s) 98, 136
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 2 cut(s) 26, 162
Lsp1109I GCAGC 1 cut(s) 111
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 46, 161
MfeI CAATTG 1 cut(s) 15
MluCI AATT 4 cut(s) 15, 131, 152, 160
MseI TTAA 1 cut(s) 81
MunI CAATTG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 142
PfeI GAWTC 2 cut(s) 21, 64
PkrI GCNGC 1 cut(s) 126
PmaCI CACGTG 1 cut(s) 99
PmlI CACGTG 1 cut(s) 99
Ppu21I YACGTR 1 cut(s) 99
PspCI CACGTG 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 1 cut(s) 88
SetI ASST 4 cut(s) 42, 53, 101, 126
SgeI CNNG 8 cut(s) 20, 53, 73, 80, 109, 111, 133, 161
Sse9I AATT 4 cut(s) 15, 131, 152, 160
TaiI ACGT 1 cut(s) 101
TasI AATT 4 cut(s) 15, 131, 152, 160
TfiI GAWTC 2 cut(s) 21, 64
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 13
XapI RAATTY 2 cut(s) 152, 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.