Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000672

Physical Location & Seq

Genomic Coordinates Forward (+)

2508841 .. 2510164

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG037500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGATTTTGAACCTCCAATTATATTATCTAGACATATTCTTAAGCTGCGGTTCTCGAGGGAGAGGGGAGTGGGAGTGCAGAGATAACGATGAAAAGGGTCATAGGCTCATAGCTAGGTCTCCAATGGAAATGGACACGTTACAGATGAAGCTGGCTAGGTATCTGAGCAGCCCAATGGGTGTTCCGGAAGATAAGCACCCGTTTATTATTTTACATATATTGGATATGCGTGAAGAAGCCGTCCCAGCTAAAATTATCGATGTGCACTTGATCACTATTAGAGATACGAAGGAATCCATGCACTTAAACGTGGAAGACAATTACTACAGGCTCAAGCTTATTCCGGCAACTGAAGCATTCATTCAAGGTTTGGAGCAAGTGAGACTCGTTGAGCATGATAGTCTGGAAATGCTTGGTCTGGAGACATCTTGTGCTATTTGTGTGGATGCCTTTGGCGGACACGAGAGATCACCTTCTCTTGGTCGCCCTGCTTACATTATTATCATCGACATTGCATTGTCGAGTGGCTCAGGATCAATCACGTCTGTCCCATTTGCCGGCACCCTAATGACCCCATGCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ zf-RING_2

Protein Analysis

194

Amino Acids

21.79

Weight (kDa)

5.21

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g16160 FvH4_2g35510 FvH4_2g35780 FvH4_2g35800 FvH4_2g35820 FvH4_2g37001 FvH4_2g37010 FvH4_3g15631 FvH4_4g02851 FvH4_4g04350 FvH4_5g02800 FvH4_5g20841 FvH4_6g04371 FvH4_6g05080 FvH4_6g05110 FvH4_6g05110 FvH4_6g11150 FvH4_6g30701 FvH4_7g27701
rosa_chinensis	RchiOBHm_Chr3g0484371 RchiOBHm_Chr3g0484461 RchiOBHm_Chr6g0305991 RchiOBHm_Chr6g0306361
rosa_laevigata	RLG00000010804 RLG00000010834 RLG00000010836 RLG00000023229 RLG00000025652
rosa_multiflora	Rmu_co8287559.1_g000001 Rmu_co8483409.1_g000001 Rmu_sc0000295.1_g000021 Rmu_sc0001809.1_g000061 Rmu_sc0003473.1_g000008 Rmu_sc0007821.1_g000008 Rmu_sc0020534.1_g000003 Rmu_sc0020534.1_g000004 Rmu_sc0031367.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162150 Rroxscaffold_7G00182610 Rroxscaffold_7G00210990
rosa_rugosa	Rorug02G0635600 Rorug04G0038100 Rorug06G0177500 Rorug06G0345900 Rorug06G0346000.1 Rorug06G0346100.1 Rorug06G0348400 Rorug06G0348500 Rorug06G0352200
rosa_samantha	Rh3AG037500 Rh3AG260200 Rh6AG067600 Rh6AG457900 Rh6BG060700 Rh6BG291400 Rh6BG442900 Rh6BG443200 Rh6CG060600 Rh6CG472600 Rh6DG458600 Rh6DG461800 Rh6DG465500 Rh7AG428600
rosa_wichuraiana	Rw3G023500 Rw5G004660 Rw6G005950 Rw6G039940 Rw6G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	560
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	2 cut(s)	48, 456
AclWI	GGATC	1 cut(s)	541
AcuI	CTGAAG	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	479, 557
AflII	CTTAAG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	10, 365
AjiI	CACGTC	1 cut(s)	543
AluBI	AGCT	5 cut(s)	45, 113, 151, 248, 337
AluI	AGCT	5 cut(s)	45, 113, 151, 248, 337
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	3 cut(s)	123, 376, 416
Alw44I	GTGCAC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	541
Ama87I	CYCGRG	1 cut(s)	54
Aor13HI	TCCGGA	1 cut(s)	184
ApaLI	GTGCAC	1 cut(s)	263
ApeKI	GCWGC	2 cut(s)	45, 168
AsuHPI	GGTGA	1 cut(s)	462
AvaI	CYCGRG	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	560
BauI	CACGAG	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	32, 180
BceAI	ACGGC	1 cut(s)	224
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	3 cut(s)	123, 376, 416
BfaI	CTAG	3 cut(s)	29, 114, 156
BfmI	CTRYAG	1 cut(s)	325
BfrI	CTTAAG	1 cut(s)	40
BisI	GCNGC	2 cut(s)	46, 169
BlsI	GCNGC	2 cut(s)	47, 170
BmeT110I	CYCGRG	1 cut(s)	54
BmgBI	CACGTC	1 cut(s)	543
BmiI	GGNNCC	1 cut(s)	562
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 557
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	1 cut(s)	510
BseAI	TCCGGA	1 cut(s)	184
BseCI	ATCGAT	1 cut(s)	258
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	2 cut(s)	479, 557
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	2 cut(s)	155, 543
BseNI	ACTGG	1 cut(s)	580
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	32, 180
BseYI	CCCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	560
BshVI	ATCGAT	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	54
BsiSI	CCGG	3 cut(s)	185, 344, 558
BslFI	GGGAC	2 cut(s)	227, 533
BslI	CCNNNNNNNGG	2 cut(s)	479, 557
BsmAI	GTCTC	3 cut(s)	123, 376, 416
BsmFI	GGGAC	2 cut(s)	227, 533
BsmI	GAATGC	1 cut(s)	356
Bso31I	GGTCTC	1 cut(s)	123
BsoBI	CYCGRG	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	270, 467, 533
BspACI	CCGC	2 cut(s)	48, 456
BspCNI	CTCAG	2 cut(s)	156, 542
BspDI	ATCGAT	1 cut(s)	258
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	541
BspT107I	GGYRCC	1 cut(s)	560
BspTI	CTTAAG	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	557
BsrI	ACTGG	1 cut(s)	580
BssAI	RCCGGY	1 cut(s)	557
BssMI	GATC	3 cut(s)	270, 467, 533
BssSI	CACGAG	1 cut(s)	461
Bst2BI	CACGAG	1 cut(s)	461
BstAFI	CTTAAG	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	153, 559
BstDEI	CTNAG	2 cut(s)	164, 529
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	3 cut(s)	273, 470, 536
BstMAI	GTCTC	3 cut(s)	123, 376, 416
BstMBI	GATC	3 cut(s)	270, 467, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 353
BstSFI	CTRYAG	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	32, 180
BstV2I	GAAGAC	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	258
BsuTUI	ATCGAT	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	543
BtsCI	GGATG	1 cut(s)	451
Cac8I	GCNNGC	2 cut(s)	153, 559
Cfr10I	RCCGGY	1 cut(s)	557
ClaI	ATCGAT	1 cut(s)	258
CviAII	CATG	3 cut(s)	298, 395, 576
DdeI	CTNAG	2 cut(s)	164, 529
DpnI	GATC	3 cut(s)	272, 469, 535
DpnII	GATC	3 cut(s)	270, 467, 533
EciI	GGCGGA	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	54
FaeI	CATG	3 cut(s)	301, 398, 579
FaqI	GGGAC	2 cut(s)	227, 533
FatI	CATG	3 cut(s)	297, 394, 575
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	46, 169
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	2 cut(s)	46, 169
FspBI	CTAG	3 cut(s)	29, 114, 156
GluI	GCNGC	2 cut(s)	46, 169
GsaI	CCCAGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	440
HapII	CCGG	3 cut(s)	185, 344, 558
Hin1II	CATG	3 cut(s)	301, 398, 579
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	293, 384
HpaII	CCGG	3 cut(s)	185, 344, 558
HphI	GGTGA	1 cut(s)	462
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	6 cut(s)	29, 54, 185, 404, 419, 531
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	283, 483
HpyCH4IV	ACGT	3 cut(s)	137, 309, 542
HpyCH4V	TGCA	4 cut(s)	78, 265, 301, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 353
HpyF3I	CTNAG	2 cut(s)	164, 529
HpySE526I	ACGT	3 cut(s)	137, 309, 542
Hsp92II	CATG	3 cut(s)	301, 398, 579
Kpn2I	TCCGGA	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	557
KroNI	GCCGGC	1 cut(s)	559
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	270, 467, 533
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	2 cut(s)	32, 180
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	3 cut(s)	29, 114, 156
MaeII	ACGT	3 cut(s)	137, 309, 542
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	3 cut(s)	272, 469, 535
MboI	GATC	3 cut(s)	270, 467, 533
MboII	GAAGA	3 cut(s)	200, 245, 326
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	3 cut(s)	17, 252, 319
MlyI	GAGTC	1 cut(s)	378
MnlI	CCTC	3 cut(s)	23, 50, 56
MroI	TCCGGA	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	557
MseI	TTAA	2 cut(s)	41, 305
MslI	CAYNNNNRTG	1 cut(s)	566
MspCI	CTTAAG	1 cut(s)	40
MspI	CCGG	3 cut(s)	185, 344, 558
Mva1269I	GAATGC	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	245, 353
NaeI	GCCGGC	1 cut(s)	559
NdeII	GATC	3 cut(s)	270, 467, 533
NgoMIV	GCCGGC	1 cut(s)	557
NlaIII	CATG	3 cut(s)	301, 398, 579
NlaIV	GGNNCC	1 cut(s)	562
PaeR7I	CTCGAG	1 cut(s)	54
PctI	GAATGC	1 cut(s)	356
PdiI	GCCGGC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	47, 170
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	562
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	41, 305
SatI	GCNGC	2 cut(s)	46, 169
Sau3AI	GATC	3 cut(s)	270, 467, 533
SchI	GAGTC	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	325
Sfr274I	CTCGAG	1 cut(s)	54
SlaI	CTCGAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	3 cut(s)	40, 54, 332
SmoI	CTYRAG	3 cut(s)	40, 54, 332
Sse9I	AATT	3 cut(s)	17, 252, 319
SsiI	CCGC	2 cut(s)	48, 456
SspMI	CTAG	3 cut(s)	29, 114, 156
TaiI	ACGT	3 cut(s)	140, 312, 545
TaqI	TCGA	4 cut(s)	55, 258, 507, 521
TasI	AATT	3 cut(s)	17, 252, 319
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	41, 305
Tru9I	TTAA	2 cut(s)	41, 305
TseI	GCWGC	2 cut(s)	45, 168
TspDTI	ATGAA	3 cut(s)	105, 161, 349
Vha464I	CTTAAG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	263
XbaI	TCTAGA	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	54
XspI	CTAG	3 cut(s)	29, 114, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.