Rorug06G0348400

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000358
Physical Location & Seq
Forward (+)
49863959 .. 49867921
3963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0348400.1

Sequence Viewer

Length: 900 bp
ATGGCGTCGCAATCAGATCACCAGGCTAAGATAATTGACGGCAAAGCCATAGCACAGACCATCCGATCTGAAATTGCTGAGGAAGTTCACCATCTCTCTCAGAAATATGGCAAGGTCCCTGGACTGGCAGTAGTGATTGTGGGGAGCAGGAAGGACTCCCAAAGCTATGTCAGCATGAAGCGAAAGGCATGCACTGAAGTTGGCATTAAATCTGTCGACATAGATCTCCCTGAGAATGTGTCCCTAGATGATCTCATAGCCAAAGTTCACGAATTAAATGTGAATCCTGATGTACATGGCATACTTGTTCAGCTTCCATTGCCAAGGCATATTAATGAAGAGAAAGTGTTAAGTGAAATCAGCATCGAGAAGGATGTAGATGGGTTTCATCCTCTTAACATCGGCAAACTTGCAATGAAAGGCAGAGAACCTTTATTCCTCCCTTGCACTCCCAAGGGCTGTCTTGAACTTCTGTCACGGAGTGGTATAAGCATAACGGGAAAGAAGGCAGTCGTGGTGGGAAGAAGTAACATAGTTGGATTGCCAGTTTCATTGCTGCTTTTGAAAGCCAATGCTACTGTTACCGTGGTTCATTCCAACACTCCTGATCCAGAGAGTATCATTCGTGAAGCGGACATTGTTATTGCTGCAGCAGGACAGGCAATGATGATCAAGGGTAGCTGGATAAAACCAGGTGCTGCAATTATAGATGTTGGCACAAATGCTGTAGATGACTCCAGTAAAAAGTCGGGTTATAGATTGGTCGGGGATGTAGATTTCCAGGAAGCATGTAAGGTAGCTGGATGGATAACTCCGGTTCCTGGTGGAGTTGGCCCGATGACTGTTGCAATGCTTCTCAAGAACACATTGGATGGTGCTAAGCGAGTGATTGCGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

299

Amino Acids

31.83

Weight (kDa)

7.7

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THF_DHG_CYH PF00763 12 - 127 1.2e-42 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C PF02882 148 - 295 3.1e-60 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 894
AccI GTMKAC 1 cut(s) 216
AciI CCGC 1 cut(s) 632
AclWI GGATC 1 cut(s) 602
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 482
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 2 cut(s) 124, 821
AgsI TTSAA 2 cut(s) 467, 565
AjnI CCWGG 5 cut(s) 21, 118, 691, 780, 820
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 4 cut(s) 165, 313, 681, 800
AluI AGCT 4 cut(s) 165, 313, 681, 800
AlwI GGATC 1 cut(s) 602
AlwNI CAGNNNCTG 1 cut(s) 698
AoxI GGCC 1 cut(s) 832
ApeKI GCWGC 4 cut(s) 556, 647, 650, 698
AseI ATTAAT 1 cut(s) 333
AspLEI GCGC 1 cut(s) 895
AspS9I GGNCC 2 cut(s) 115, 833
AsuHPI GGTGA 2 cut(s) 11, 80
AvaII GGWCC 1 cut(s) 115
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 4 cut(s) 543, 634, 662, 685
BccI CCATC 5 cut(s) 68, 99, 374, 798, 866
BceAI ACGGC 1 cut(s) 55
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BciT130I CCWGG 5 cut(s) 23, 120, 693, 782, 822
BclI TGATCA 1 cut(s) 669
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 2 cut(s) 648, 726
BglII AGATCT 1 cut(s) 223
BisI GCNGC 4 cut(s) 557, 648, 651, 699
BlpI GCTNAGC 1 cut(s) 879
BlsI GCNGC 4 cut(s) 558, 649, 652, 700
Bme1390I CCNGG 5 cut(s) 23, 120, 693, 782, 822
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 115, 833
BmiI GGNNCC 2 cut(s) 117, 819
BmrFI CCNGG 5 cut(s) 23, 120, 693, 782, 822
BmsI GCATC 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 721
Bpu10I CCTNAGC 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 879
BpuEI CTTGAG 1 cut(s) 842
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 118, 323, 453, 585
BsaWI WCCGGW 1 cut(s) 814
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 821
Bse1I ACTGG 3 cut(s) 129, 545, 738
Bse3DI GCAATG 5 cut(s) 317, 420, 551, 669, 855
BseBI CCWGG 5 cut(s) 23, 120, 693, 782, 822
BseDI CCNNGG 4 cut(s) 118, 323, 453, 585
BseGI GGATG 6 cut(s) 60, 379, 388, 775, 809, 877
BseLI CCNNNNNNNGG 2 cut(s) 124, 821
BseMI GCAATG 5 cut(s) 317, 420, 551, 669, 855
BseMII CTCAG 3 cut(s) 69, 113, 222
BseNI ACTGG 3 cut(s) 129, 545, 738
BseXI GCAGC 4 cut(s) 543, 634, 662, 685
BshFI GGCC 1 cut(s) 834
BsiSI CCGG 1 cut(s) 815
BslFI GGGAC 2 cut(s) 101, 226
BslI CCNNNNNNNGG 2 cut(s) 124, 821
BsmFI GGGAC 2 cut(s) 101, 226
BsnI GGCC 1 cut(s) 834
Bsp1407I TGTACA 1 cut(s) 292
Bsp143I GATC 6 cut(s) 16, 65, 223, 250, 607, 669
Bsp1720I GCTNAGC 1 cut(s) 879
BspACI CCGC 1 cut(s) 632
BspANI GGCC 1 cut(s) 834
BspCNI CTCAG 3 cut(s) 70, 112, 223
BspLI GGNNCC 2 cut(s) 117, 819
BspMAI CTGCAG 1 cut(s) 652
BspPI GGATC 1 cut(s) 602
BsrDI GCAATG 5 cut(s) 317, 420, 551, 669, 855
BsrGI TGTACA 1 cut(s) 292
BsrI ACTGG 3 cut(s) 129, 545, 738
BssECI CCNNGG 4 cut(s) 118, 323, 453, 585
BssMI GATC 6 cut(s) 16, 65, 223, 250, 607, 669
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 323, 453
Bst2UI CCWGG 5 cut(s) 23, 120, 693, 782, 822
Bst4CI ACNGT 3 cut(s) 580, 586, 844
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 5 cut(s) 27, 78, 99, 231, 879
BstDSI CCRYGG 1 cut(s) 585
BstF5I GGATG 6 cut(s) 60, 379, 388, 775, 809, 877
BstHHI GCGC 1 cut(s) 895
BstKTI GATC 6 cut(s) 19, 68, 226, 253, 610, 672
BstMBI GATC 6 cut(s) 16, 65, 223, 250, 607, 669
BstMWI GCNNNNNNNGC 3 cut(s) 171, 319, 659
BstNI CCWGG 5 cut(s) 23, 120, 693, 782, 822
BstNSI RCATGY 2 cut(s) 192, 792
BstSCI CCNGG 5 cut(s) 21, 118, 691, 780, 820
BstSFI CTRYAG 2 cut(s) 648, 726
BstV1I GCAGC 4 cut(s) 543, 634, 662, 685
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 1 cut(s) 834
BtgI CCRYGG 1 cut(s) 585
BtsCI GGATG 6 cut(s) 60, 379, 388, 775, 809, 877
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 1 cut(s) 895
Cfr13I GGNCC 2 cut(s) 115, 833
CsiI ACCWGGT 1 cut(s) 691
Csp6I GTAC 1 cut(s) 293
CviAII CATG 4 cut(s) 175, 189, 296, 789
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 5 cut(s) 27, 78, 99, 231, 879
DpnI GATC 6 cut(s) 18, 67, 225, 252, 609, 671
DpnII GATC 6 cut(s) 16, 65, 223, 250, 607, 669
DraIII CACNNNGTG 1 cut(s) 482
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 2 cut(s) 323, 453
Eco47I GGWCC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 115
EcoRII CCWGG 5 cut(s) 21, 118, 691, 780, 820
EcoT14I CCWWGG 2 cut(s) 323, 453
ErhI CCWWGG 2 cut(s) 323, 453
FaeI CATG 4 cut(s) 178, 192, 299, 792
FaqI GGGAC 2 cut(s) 101, 226
FatI CATG 4 cut(s) 174, 188, 295, 788
FbaI TGATCA 1 cut(s) 669
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 557, 648, 651, 699
FokI GGATG 6 cut(s) 47, 375, 386, 782, 816, 884
Fsp4HI GCNGC 4 cut(s) 557, 648, 651, 699
FspBI CTAG 1 cut(s) 245
FspI TGCGCA 1 cut(s) 894
GlaI GCGC 1 cut(s) 894
GluI GCNGC 4 cut(s) 557, 648, 651, 699
GsuI CTGGAG 1 cut(s) 721
HaeIII GGCC 1 cut(s) 834
HapII CCGG 1 cut(s) 815
HhaI GCGC 1 cut(s) 895
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 178, 192, 299, 792
Hin6I GCGC 1 cut(s) 893
HinP1I GCGC 1 cut(s) 893
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 3 cut(s) 155, 283, 734
HpaII CCGG 1 cut(s) 815
HphI GGTGA 2 cut(s) 11, 80
Hpy166II GTNNAC 3 cut(s) 88, 217, 268
Hpy188I TCNGA 4 cut(s) 16, 65, 70, 102
Hpy188III TCNNGA 8 cut(s) 269, 287, 367, 464, 605, 611, 626, 859
Hpy8I GTNNAC 3 cut(s) 88, 217, 268
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 145, 364, 499
HpyCH4III ACNGT 3 cut(s) 580, 586, 844
HpyCH4V TGCA 6 cut(s) 192, 413, 447, 650, 701, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 319, 659
HpyF3I CTNAG 5 cut(s) 27, 78, 99, 231, 879
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 178, 192, 299, 792
HspAI GCGC 1 cut(s) 893
Ksp22I TGATCA 1 cut(s) 669
Kzo9I GATC 6 cut(s) 16, 65, 223, 250, 607, 669
LmnI GCTCC 1 cut(s) 144
Lsp1109I GCAGC 4 cut(s) 543, 634, 662, 685
LweI GCATC 1 cut(s) 372
MabI ACCWGGT 1 cut(s) 691
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 3 cut(s) 474, 527, 580
MalI GATC 6 cut(s) 18, 67, 225, 252, 609, 671
MboI GATC 6 cut(s) 16, 65, 223, 250, 607, 669
MboII GAAGA 2 cut(s) 350, 534
MflI RGATCY 1 cut(s) 223
MluCI AATT 4 cut(s) 33, 72, 272, 702
MlyI GAGTC 2 cut(s) 149, 728
MmeI TCCRAC 2 cut(s) 517, 621
MnlI CCTC 3 cut(s) 73, 402, 449
MseI TTAA 5 cut(s) 207, 275, 333, 350, 396
MslI CAYNNNNRTG 1 cut(s) 333
MspI CCGG 1 cut(s) 815
MspR9I CCNGG 5 cut(s) 23, 120, 693, 782, 822
MvaI CCWGG 5 cut(s) 23, 120, 693, 782, 822
MwoI GCNNNNNNNGC 3 cut(s) 171, 319, 659
NdeII GATC 6 cut(s) 16, 65, 223, 250, 607, 669
NlaIII CATG 4 cut(s) 178, 192, 299, 792
NlaIV GGNNCC 2 cut(s) 117, 819
NmuCI GTSAC 1 cut(s) 474
NsbI TGCGCA 1 cut(s) 894
NspI RCATGY 2 cut(s) 192, 792
PaeI GCATGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 780
PkrI GCNGC 4 cut(s) 558, 649, 652, 700
PleI GAGTC 2 cut(s) 149, 728
PpsI GAGTC 2 cut(s) 149, 728
PpuMI RGGWCCY 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 115
Psp6I CCWGG 5 cut(s) 21, 118, 691, 780, 820
PspGI CCWGG 5 cut(s) 21, 118, 691, 780, 820
PspN4I GGNNCC 2 cut(s) 117, 819
PspPI GGNCC 2 cut(s) 115, 833
PspPPI RGGWCCY 1 cut(s) 115
PstI CTGCAG 1 cut(s) 652
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 333
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 5 cut(s) 207, 275, 333, 350, 396
SatI GCNGC 4 cut(s) 557, 648, 651, 699
Sau3AI GATC 6 cut(s) 16, 65, 223, 250, 607, 669
Sau96I GGNCC 2 cut(s) 115, 833
SchI GAGTC 2 cut(s) 149, 728
ScrFI CCNGG 5 cut(s) 23, 120, 693, 782, 822
SetI ASST 8 cut(s) 117, 167, 315, 433, 683, 697, 798, 802
SexAI ACCWGGT 1 cut(s) 691
SfaNI GCATC 1 cut(s) 372
SfcI CTRYAG 2 cut(s) 648, 726
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
SphI GCATGC 1 cut(s) 192
Sse9I AATT 4 cut(s) 33, 72, 272, 702
SsiI CCGC 1 cut(s) 632
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 5 cut(s) 21, 118, 691, 780, 820
StyI CCWWGG 2 cut(s) 323, 453
TaaI ACNGT 3 cut(s) 580, 586, 844
TaqI TCGA 2 cut(s) 216, 366
TasI AATT 4 cut(s) 33, 72, 272, 702
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 5 cut(s) 207, 275, 333, 350, 396
Tru9I TTAA 5 cut(s) 207, 275, 333, 350, 396
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 474
TseI GCWGC 4 cut(s) 556, 647, 650, 698
Tsp45I GTSAC 1 cut(s) 474
TspDTI ATGAA 6 cut(s) 191, 351, 377, 431, 540, 581
TspGWI ACGGA 1 cut(s) 493
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 115
VspI ATTAAT 1 cut(s) 333
XceI RCATGY 2 cut(s) 192, 792
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.