RchiOBHm_Chr6g0306251

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000358
Physical Location & Seq
Reverse (-)
65012577 .. 65013926
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27527

Sequence Viewer

Length: 1095 bp
ATGATAGGAGACGACGAACTCGGCCTAGTCCTGAGCCGGGTAACCGAGCCAGCTGATAGAAAATCGGCCTCTCAGGTCTGCAAGCGATGGTGGGTAATGGAGGGTCTGAGCCGATCGTCACTCCGAGTTCTCAACATGGATCATCTTCCTCGATTACTGCCTAGGTATCCAAACTTAGCCACATTCGAAACACCCAAGCGAATGAGCAATGCCGATCTCGCATTGGTGGCCCAATCATGCCCCAAACTGGAGGCCTTCAAACTTGGTCCGACTATTGCGGAAATTGAAATGCAAGACATCCGCGCACTGATATTACGGGTGGTTCATCAAGTTGGGGACCAAGGTTTGTGCGCTTTGGCAAATGGGTGTCCCAAATTGTCTGAGATTGTGCTTAAGAGGAGAAGGGTTGGGATGGTTGGAATCATGGCCATGATCACTTCAGCAGCACATCACTTGACTCATTTGGATTTGGAACATTGTTCTTCTGTTTCGGACCAAGCCCTTGAAGCAATTGGGTCCTCTGCTTGTCCCATTCGCGTTTTGAATTTGAAAGGTTGCTCCATTACTGGAGCCGGATTGAGATTTTTGGCAAATGGGTGTTGCTCAAAAACCATCGACCAATTGAACCTTGCGTACTGCCCTGGAATCAATAATGACGGGGTCTTGCTTTTGTGCAAGATGCGTGTCTTGGAGGAGCTGGATTTGTCGTTCTGTAGCGAGCTAACTGATGTTGGAGGACAGGCAATCTCTGCAATTCAAACCCTCAAGAAGTTGAACTTGGCCTGTGTATTCTCCCTGACAGAAAAAACTATTGTAGCTCTTGCTAAGAATTGCATAAACTTGGAGATGCTTAATCTACGTGGTGGTTTAGGGGTTACTACAGCTGCTATTGATGCATTTTTGGGTCACAAATGCTTGCAATCCCTTAATCTAATTGGTTGTTTGTTTGATGATGTTAGAGGATCTGCATTAGAAAGCCTAGCGCTTCAATGCCTTTCATTCAAGTCAATTGTGGTGAATGAAAAATGGAGAGATAGGCTGTTGCAGGAAATGCAAGAGAATACTGTTAGCAGATTCCTGCAATTCAAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

364

Amino Acids

39.81

Weight (kDa)

8.1

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 4 - 39 3.3e-10 F-box
DUF7885 PF25372 111 - 300 5.1e-10 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 303, 537
AciI CCGC 2 cut(s) 278, 301
AclWI GGATC 2 cut(s) 147, 970
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 1 cut(s) 635
AfeI AGCGCT 1 cut(s) 984
AfiI CCNNNNNNNGG 2 cut(s) 37, 247
AflII CTTAAG 1 cut(s) 392
AjnI CCWGG 1 cut(s) 640
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
AloI GAACNNNNNNTCC 2 cut(s) 692, 724
AluBI AGCT 5 cut(s) 53, 697, 721, 818, 884
AluI AGCT 5 cut(s) 53, 697, 721, 818, 884
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 2 cut(s) 147, 970
Aor51HI AGCGCT 1 cut(s) 984
AoxI GGCC 6 cut(s) 22, 66, 228, 252, 426, 780
ApeKI GCWGC 2 cut(s) 443, 884
ApoI RAATTY 1 cut(s) 544
AspA2I CCTAGG 1 cut(s) 161
AspLEI GCGC 3 cut(s) 305, 353, 985
AspS9I GGNCC 5 cut(s) 229, 266, 337, 493, 516
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 1027
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 4 cut(s) 266, 337, 493, 516
AvrII CCTAGG 1 cut(s) 161
BalI TGGCCA 1 cut(s) 428
BbvI GCAGC 2 cut(s) 455, 871
BccI CCATC 3 cut(s) 81, 406, 620
BciT130I CCWGG 1 cut(s) 642
BciVI GTATCC 1 cut(s) 177
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 3 cut(s) 26, 162, 980
BfmI CTRYAG 2 cut(s) 712, 879
BfoI RGCGCY 1 cut(s) 986
BfrI CTTAAG 1 cut(s) 392
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 2 cut(s) 444, 885
BlnI CCTAGG 1 cut(s) 161
BlsI GCNGC 2 cut(s) 445, 886
Bme1390I CCNGG 2 cut(s) 38, 642
Bme18I GGWCC 4 cut(s) 266, 337, 493, 516
BmgT120I GGNCC 5 cut(s) 229, 266, 337, 493, 516
BmiI GGNNCC 3 cut(s) 338, 517, 571
BmrFI CCNGG 2 cut(s) 38, 642
BmsI GCATC 3 cut(s) 669, 837, 883
BpmI CTGGAG 2 cut(s) 269, 588
Bpu10I CCTNAGC 1 cut(s) 32
Bpu14I TTCGAA 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 860
BsaJI CCNNGG 3 cut(s) 161, 340, 640
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 247
Bse1I ACTGG 2 cut(s) 252, 571
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 3 cut(s) 161, 340, 640
BseGI GGATG 2 cut(s) 297, 417
BseLI CCNNNNNNNGG 2 cut(s) 37, 247
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 4 cut(s) 23, 86, 98, 372
BseNI ACTGG 2 cut(s) 252, 571
BseRI GAGGAG 2 cut(s) 412, 707
BseXI GCAGC 2 cut(s) 455, 871
Bsh1236I CGCG 2 cut(s) 303, 537
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 6 cut(s) 24, 68, 230, 254, 428, 782
BsiEI CGRYCG 1 cut(s) 116
BsiSI CCGG 2 cut(s) 37, 573
BslFI GGGAC 3 cut(s) 350, 354, 513
BslI CCNNNNNNNGG 2 cut(s) 37, 247
BsmAI GTCTC 1 cut(s) 3
BsmBI CGTCTC 1 cut(s) 3
BsmFI GGGAC 3 cut(s) 350, 354, 513
BsnI GGCC 6 cut(s) 24, 68, 230, 254, 428, 782
Bsp119I TTCGAA 1 cut(s) 186
Bsp143I GATC 5 cut(s) 113, 139, 214, 432, 962
BspACI CCGC 2 cut(s) 278, 301
BspANI GGCC 6 cut(s) 24, 68, 230, 254, 428, 782
BspCNI CTCAG 4 cut(s) 24, 85, 99, 373
BspFNI CGCG 2 cut(s) 303, 537
BspLI GGNNCC 3 cut(s) 338, 517, 571
BspPI GGATC 2 cut(s) 147, 970
BspT104I TTCGAA 1 cut(s) 186
BspTI CTTAAG 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 2 cut(s) 252, 571
BssECI CCNNGG 3 cut(s) 161, 340, 640
BssMI GATC 5 cut(s) 113, 139, 214, 432, 962
BssT1I CCWWGG 2 cut(s) 161, 340
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 1 cut(s) 1066
BstAFI CTTAAG 1 cut(s) 392
BstAPI GCANNNNNTGC 2 cut(s) 749, 1051
BstBAI YACGTR 1 cut(s) 860
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 4 cut(s) 51, 83, 719, 917
BstDEI CTNAG 6 cut(s) 32, 72, 107, 175, 381, 825
BstEII GGTNACC 1 cut(s) 40
BstF5I GGATG 2 cut(s) 297, 417
BstFNI CGCG 2 cut(s) 303, 537
BstH2I RGCGCY 1 cut(s) 986
BstHHI GCGC 3 cut(s) 305, 353, 985
BstKTI GATC 5 cut(s) 116, 142, 217, 435, 965
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 5 cut(s) 113, 139, 214, 432, 962
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 6 cut(s) 218, 227, 506, 749, 893, 1051
BstNI CCWGG 1 cut(s) 642
BstPI GGTNACC 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 36, 640
BstSFI CTRYAG 2 cut(s) 712, 879
BstUI CGCG 2 cut(s) 303, 537
BstV1I GCAGC 2 cut(s) 455, 871
BstX2I RGATCY 1 cut(s) 962
BstYI RGATCY 1 cut(s) 962
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 6 cut(s) 24, 68, 230, 254, 428, 782
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 297, 417
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 4 cut(s) 51, 83, 719, 917
CfoI GCGC 3 cut(s) 305, 353, 985
Cfr13I GGNCC 5 cut(s) 229, 266, 337, 493, 516
Csp6I GTAC 1 cut(s) 634
CviAII CATG 4 cut(s) 136, 237, 424, 430
CviQI GTAC 1 cut(s) 634
DdeI CTNAG 6 cut(s) 32, 72, 107, 175, 381, 825
DpnI GATC 5 cut(s) 115, 141, 216, 434, 964
DpnII GATC 5 cut(s) 113, 139, 214, 432, 962
EaeI YGGCCR 1 cut(s) 426
Eco130I CCWWGG 2 cut(s) 161, 340
Eco147I AGGCCT 1 cut(s) 254
Eco47I GGWCC 4 cut(s) 266, 337, 493, 516
Eco47III AGCGCT 1 cut(s) 984
Eco57I CTGAAG 1 cut(s) 423
Eco91I GGTNACC 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 516
EcoO65I GGTNACC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 640
EcoT14I CCWWGG 2 cut(s) 161, 340
EcoT22I ATGCAT 1 cut(s) 898
ErhI CCWWGG 2 cut(s) 161, 340
Esp3I CGTCTC 1 cut(s) 3
FaeI CATG 4 cut(s) 139, 240, 427, 433
FaiI YATR 5 cut(s) 137, 238, 425, 431, 836
FalI AAGNNNNNCTT 2 cut(s) 761, 793
FaqI GGGAC 3 cut(s) 350, 354, 513
FatI CATG 4 cut(s) 135, 236, 423, 429
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 444, 885
FokI GGATG 2 cut(s) 284, 424
Fsp4HI GCNGC 2 cut(s) 444, 885
FspBI CTAG 3 cut(s) 26, 162, 980
GlaI GCGC 3 cut(s) 304, 352, 984
GluI GCNGC 2 cut(s) 444, 885
GsuI CTGGAG 2 cut(s) 269, 588
HaeII RGCGCY 1 cut(s) 986
HaeIII GGCC 6 cut(s) 24, 68, 230, 254, 428, 782
HapII CCGG 2 cut(s) 37, 573
HhaI GCGC 3 cut(s) 305, 353, 985
Hin1II CATG 4 cut(s) 139, 240, 427, 433
Hin6I GCGC 3 cut(s) 303, 351, 983
HinP1I GCGC 3 cut(s) 303, 351, 983
HinfI GANTC 4 cut(s) 420, 457, 645, 1074
HpaII CCGG 2 cut(s) 37, 573
HphI GGTGA 1 cut(s) 1027
Hpy188I TCNGA 5 cut(s) 108, 125, 270, 382, 493
Hpy188III TCNNGA 2 cut(s) 31, 766
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 265, 396
HpyCH4III ACNGT 1 cut(s) 1066
HpyCH4IV ACGT 1 cut(s) 859
HpyF10VI GCNNNNNNNGC 6 cut(s) 218, 227, 506, 749, 893, 1051
HpyF3I CTNAG 6 cut(s) 32, 72, 107, 175, 381, 825
HpySE526I ACGT 1 cut(s) 859
Hsp92II CATG 4 cut(s) 139, 240, 427, 433
HspAI GCGC 3 cut(s) 303, 351, 983
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 5 cut(s) 113, 139, 214, 432, 962
LmnI GCTCC 3 cut(s) 563, 569, 694
Lsp1109I GCAGC 2 cut(s) 455, 871
LweI GCATC 3 cut(s) 669, 837, 883
MaeI CTAG 3 cut(s) 26, 162, 980
MaeII ACGT 1 cut(s) 859
MaeIII GTNAC 4 cut(s) 40, 117, 874, 905
MalI GATC 5 cut(s) 115, 141, 216, 434, 964
MboI GATC 5 cut(s) 113, 139, 214, 432, 962
MboII GAAGA 2 cut(s) 137, 474
MfeI CAATTG 3 cut(s) 510, 620, 1008
MflI RGATCY 1 cut(s) 962
MlsI TGGCCA 1 cut(s) 428
MluNI TGGCCA 1 cut(s) 428
MlyI GAGTC 1 cut(s) 451
MmeI TCCRAC 3 cut(s) 293, 397, 712
Mox20I TGGCCA 1 cut(s) 428
Mph1103I ATGCAT 1 cut(s) 898
MscI TGGCCA 1 cut(s) 428
MseI TTAA 3 cut(s) 393, 852, 927
MslI CAYNNNNRTG 1 cut(s) 428
Msp20I TGGCCA 1 cut(s) 428
MspA1I CMGCKG 2 cut(s) 53, 884
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 2 cut(s) 37, 573
MspR9I CCNGG 2 cut(s) 38, 642
MunI CAATTG 3 cut(s) 510, 620, 1008
MvaI CCWGG 1 cut(s) 642
MvnI CGCG 2 cut(s) 303, 537
MwoI GCNNNNNNNGC 6 cut(s) 218, 227, 506, 749, 893, 1051
NciI CCSGG 1 cut(s) 38
NdeII GATC 5 cut(s) 113, 139, 214, 432, 962
NlaIII CATG 4 cut(s) 139, 240, 427, 433
NlaIV GGNNCC 3 cut(s) 338, 517, 571
NmuCI GTSAC 2 cut(s) 117, 905
NsiI ATGCAT 1 cut(s) 898
NspV TTCGAA 1 cut(s) 186
PceI AGGCCT 1 cut(s) 254
PfeI GAWTC 3 cut(s) 420, 645, 1074
PflFI GACNNNGTC 1 cut(s) 659
PkrI GCNGC 2 cut(s) 445, 886
Ple19I CGATCG 1 cut(s) 116
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
Ppu21I YACGTR 1 cut(s) 860
PpuMI RGGWCCY 1 cut(s) 516
Psp5II RGGWCCY 1 cut(s) 516
Psp6I CCWGG 1 cut(s) 640
PspEI GGTNACC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 3 cut(s) 338, 517, 571
PspPI GGNCC 5 cut(s) 229, 266, 337, 493, 516
PspPPI RGGWCCY 1 cut(s) 516
PsrI GAACNNNNNNTAC 2 cut(s) 617, 649
PsuI RGATCY 1 cut(s) 962
PsyI GACNNNGTC 1 cut(s) 659
PvuI CGATCG 1 cut(s) 116
PvuII CAGCTG 2 cut(s) 53, 884
RsaI GTAC 1 cut(s) 635
RsaNI GTAC 1 cut(s) 634
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 3 cut(s) 393, 852, 927
SatI GCNGC 2 cut(s) 444, 885
Sau3AI GATC 5 cut(s) 113, 139, 214, 432, 962
Sau96I GGNCC 5 cut(s) 229, 266, 337, 493, 516
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 2 cut(s) 38, 642
SfaNI GCATC 3 cut(s) 669, 837, 883
SfcI CTRYAG 2 cut(s) 712, 879
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 4 cut(s) 266, 337, 493, 516
SmiMI CAYNNNNRTG 1 cut(s) 428
SmlI CTYRAG 2 cut(s) 392, 764
SmoI CTYRAG 2 cut(s) 392, 764
SseBI AGGCCT 1 cut(s) 254
SsiI CCGC 2 cut(s) 278, 301
SspMI CTAG 3 cut(s) 26, 162, 980
StuI AGGCCT 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 36, 640
StyI CCWWGG 2 cut(s) 161, 340
TaaI ACNGT 1 cut(s) 1066
TaiI ACGT 1 cut(s) 862
TaqI TCGA 3 cut(s) 151, 186, 615
TfiI GAWTC 3 cut(s) 420, 645, 1074
Tru1I TTAA 3 cut(s) 393, 852, 927
Tru9I TTAA 3 cut(s) 393, 852, 927
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 2 cut(s) 117, 905
TseI GCWGC 2 cut(s) 443, 884
Tsp45I GTSAC 2 cut(s) 117, 905
TspDTI ATGAA 3 cut(s) 314, 987, 1035
TspRI CASTG 1 cut(s) 312
Tth111I GACNNNGTC 1 cut(s) 659
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 4 cut(s) 266, 337, 493, 516
XapI RAATTY 1 cut(s) 544
XmaJI CCTAGG 1 cut(s) 161
XspI CTAG 3 cut(s) 26, 162, 980
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.